TCONS_00060948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060948
Unique NameTCONS_00060948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060948 ID=TCONS_00060948|Name=TCONS_00060948|organism=Clytia hemisphaerica|type=transcript|length=1964bp
ATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCGAAAG
AGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatgGCAAGAAG
CTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCAATTTC
TTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAACTACG
AGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACATCAAA
GAAAAACCAGGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAA
TTTCTATCAGAACATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTC
CTATGAAAGTACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTA
TTGAAACTGAAGATTGAAGAAGCCCTGAATATCAATGATCACCATATACC
CAAATCCATCATGCAAATGTTTTGTGTTCTTTTTCAAGCATCACGAGACC
CAGAGGAACGCGAGCGGAAGAATTTTGATGAACTAGAACGATTGATGGCT
CGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTCTACTTACACCACCACA
AAGAGGCCATCATCATAATAGCCAACATTCTCATCATAAGAAACAAGACA
AGTTGACACCCTCCTCTTCCATAGGATCCGGAGCAAGTACACCGGAAACC
GAAGTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTTTGA
AGAACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGCC
CACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATCT
TTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATGTCAGGTTTG
GGCGTATTTGCTCTTTTTAAGCTTGAGCTCTAAAACTAAACTATTAACTT
CGTGATTTTCGACCTCCACAATTAAAATGTTTTGTCTTGTGTTGTtagtt
taaaccatattttgaacAAGTGTTAAATTCAGCTAATTTCTTTGTAATGC
AAACTTCTgataattttttgcattttctttggTTAGAATGTACTATATGG
GGGGGGGGCTTCTGATAATCCGGTATTGATCGATATTCCTGTGTTGACTT
GTTTTTCCGGTATTTGACAGTATTGAAAGGCCGAATTTCCGGTAATGTCG
TCGGAGCACTTGTTACCGGTACTGtatttgagaattttttctaCTGTATT
CCGGTGTCATGTTCCCTCGGAAGCCCCCGCTGCATGAATGCATTCTAATA
AGTATCATCTCGAAGTATTGGTTCGTATTCGTAATTTTAATTATattgtt
ctttaaaaagatgatagaatttttaaatttattagaACTTATTATTTGTG
TGTTTGGGAGAAGAGATTAGTTTTTGTGGGTCTAATTCCAGAGTTGAAAT
CAGTCACATTTTCTTTGTGCAAGGTTTTGGTCTTGTTTTCGCCGAAGATA
CTATTTTCGCTATTCTATGAAAATTAACTTATGTCACCTAATCTGTGAGG
TCATTTTTGTGAAGACTGAATGACTGGAATTATTCAACGAATTGAACCTT
GGTAGAGGTTTTCGAGTCATTGTATTTTCCGGGTGTGTTGTAATTATGTT
TTAAGTACCTGTACTACTCATACAAAATTATCTTGACGAAAATACACTCT
GTTCCGCTATGATTTTCTTATTGATGCATTCTTGTTTGaggaaagaaaac
ttttttgttgataatttttgtttactttttttgtgatttttaataTATTT
CGTACATCAGATTATTATTTATACttgtgtttctttttataaatatttca
tttcatatttttaattttcgaattttgattCATAATATGCAATATAGCTT
GTACATAATACTTGAACAAATTAAGCTGTAGTTACTTGAAATTGAACCTT
CCCAATGCTTGGAT
Run BLAST on NCBI

transcript from alignment at scaffold_350:143134..148494+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060948 ID=TCONS_00060948|Name=TCONS_00060948|organism=Clytia hemisphaerica|type=transcript|length=5361bp|location=Sequence derived from alignment at scaffold_350:143134..148494+ (Clytia hemisphaerica)
ATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCGAAAG
AGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatggtaagCAG
ATTTCTATTCGGTTTTTTTTTTAGGAAACGTGTTGAAATAATAAAGGCAC
TATAATTTATGTAAGGGTAGATAAGTTTCTTCTTCGGGGATATCGGGTAA
TAGTTAGAagaattattatttttgatgattttatgACATGTCAATTTTAT
CACTAAAACTGAGCCAGAATGAAAGGTTCTTTTCACAATGAGGAATGTGT
CATTTTGATGTTCTGAAGATCCAACCCTCCCTGGCCGTAACGAAATACAA
GTACAAATACAAATAGCCCGAAAAGGTGACTCTTATTAGGGAAAAACACA
TTGCAAAGCTTTGTTGTTTATCTGCTTTTTATTTTGTGTCTCAGTAAAAT
CTTATCTACTCCTACAGTTAGACCACATTGTACCTCTCTTTTCAACAAGA
AAGGTATACTTTCCCCTCTCTGacaaacaaagacattttttgatTCCCCA
TTAGAACCAGCAAGTGGTTTTCATTGTAAGATGTGAAGTACAGTATTTAT
TATTCATTAACAAAAAAATGAGAGGCAGTTCTTAAACAAatattcatttt
ccttttttcaactttactggtggttttattcaaagtttataTATTAATCT
CAGTCCTATATCATTGTAACAGATATATTCGATAATTAGCAGGGGCTATT
TTTTGAAGCTTAGGGGTCGTGAAAACTTGATGAAGTTTACAAATGGTGGC
ACAACGGTGTACTGTACCAAAAGAATGTCGATAAACTGTGAAAGGATTGC
AAGATTTCCACTAAAACTTGGTGACTTGACCTAAACTAGGGAGGCAAATT
TCACGTGGATACCTAGTAATTTAGGACTTTTTAAGCAGTCTTTCAATTCT
TTTCACGGGGTTCATTTTTGAACTAAACGAAACACTGAAGGAACTGGGTT
TAAACTTTGGAATCCCCTGGTTTGAGGTGCTTATATCGCTCTTTCTTTAA
TTGGAGGCGATTGCAGGGAAAAGTTTGTCAAAAGAAACGCGAGGGAAGCG
AGTGCGAAACTTTCCGAATAATTTTCCCTCTTTTTTGCAACTACCATTTA
TAGGCTTAAAAAACAAGTGCAAAAAATAGGGATATTAGTACCACGCACGC
TATTGAGGTATccataaaactaaaaaaacgaGTCATCCGTAAAAGAAAAC
AAGCTGTTAGTGTTACATTTAGCTACAAAAACATAAAGCTATGGAGAATT
TGGTGAATATTATGGAAACGGCGCTCCTTCACAAACGTGATCGACAAAAC
ATGTTTGGTGTTGACAATACGAAGCTCTTACTCACCATCTTTCAAGGTTC
ATGGAACTGCCCTCCattatttttgaatatatagcttccatggcGTCACA
ATGACAATTATGGGCAtgttctttttgacgttacgtcacaaaataaaaat
aagacttttgaataaaaagctaCCAAAAACCAGATTTACGAGCTAATAAA
Tttgaattatgtttgaaaacgagaaatattttagcgatgaacggataata
aaccatttatttggacgcagtctcatccaatatgaaaaatattggattag
actttgtccaataactgcttgATAGTATTATTCTTATGTGAAtctgaaaa
aatcttcagaGGGTCGCTATACAATTCCATTATAGTGCTACCactgtact
cttaggttccaaataaagggggggttggaaaatttttgaaattttaataa
acggggggggggcctaattgccggggtggttagaaattgtatttttgtaa
acccaaaaataaggtaactATAGGctaaatcaggctatttagagcaaaat
aaggggccttctctttgacagctgaaaattattcttaaaaactaataaac
ggggggttctAATAAGGTCCgtggggttggaaaattttcgaaaaattaac
aagcgtttatttggaacctaagagtaattatCTGCAGTAATTCATGATGT
TATTATAAATTCAATTCTATTCATCTTCTCTGCTTCACTTCAGGCAAGAA
GCTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCAATTT
CTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAACTAC
GAGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACATCAA
AGAAAAACCAGGTTTGCTCTCTGTACAATCGTAATTTCTTTGGATTCGCT
ATTTACACCCATTCCGTTTATTCACAATGATCAACGTCACACCCGAGTTT
GCCTGAATGTCCCCAAATTTCACAGGAAAAATTGTTCCAACCTTGTTTTT
AGTCTCAAGGTCATCACAATTTCAATATCCCCCATTaacttaattaaaaa
aaaattaaaaaaaagcttCTTCCTGTATGTTTTCTGTTGTATTATAGGTC
ATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAATTTCTATCAGAAC
ATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTCCTATGAAAGTACG
TGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTATTGAAACTGAAGA
TTGAAGAAGCCCTGAATATCAATGATCACCATATACCCAAATCCATCATG
CAAATGTTTTGTGTTCTTTTTCAAGTAAGTATTAGGTTTGTTTTTCAAGG
TCATTTACTATACTATCgtttatcagaaaaaaattcgTTGACGAGAATTT
TCATCACTTTTTCGAGGTGCGATATTACGTTCAATTGCTCACAAGTCAAA
Actttataccttatcggccctttttacaccggcgcccttattggcgttat
ttttgggctcgtggtgTAATAAGGGCCGACGTTAAAAGGGCTGGCGTAAA
AAGGGtcaatattttgcaattttaacctaaaagcggtgttaattttttat
cattatttctcaatttaaaggattttaggtatgattcgaagacgaaaatt
atccattgttttactccatatttaaaacttcagtgaaatatttaatatat
ttaaaaatcagtgattttcgatggagttttcaacagtttactacttaaaa
aagacattttaatgtaaattttagtcattatttactaatttgaagcttaa
gtagccatttttacaaattttggcgtaaAGTAGTCTAATTTTTCGATAGG
CATCACGAGACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACTAGAA
CGATTGATGGCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTCTACT
TACACCACCACAAAGAAGCCACNTGGCTCGTGTGATCAATCCCTTCTTGG
GAAGTAAAGGTCTACTTACACCACCACAAAGAGGCCATCATCATAATAGC
CAACATTCTCATCATAAGAAACAAGACAAGTTGACACCCTCCTCTTCCAT
AGGATCCGGAGCAAGTACACCGGAAACCGAAGGTAccattcttctttctt
tttgtctatCGATAAAGTACCATAAAAAAACCTTCTCAGGTCGAAACAtc
taaaacctcaaaatattctGCTCAGCTTTTGAATCTGTTTGAATCATACT
TCATACTCTTTTACGCATTTTTTtgtaagcaactccaattttcgggtcag
ccttggggttgcttagcattctagctcattttctgaaaaaaaactgcttt
gaccacccctgatattataccatatttatacATTAAatcaagggctatcg
tttgccatggttagattatctaaaaagcttatACTTTACGATATAGCGAT
ATTAATTGGCAAATTTGAGCCATCAAGCCCTAGCAACCTagttgcttaaa
aaaacaatatttttcattatAATTAAACAGACAAgtattaaagaaaaaaa
tttttttagccTTGCGTCTGAAAATATGACAGTGGTAACAAATTTCTAGT
TCCAGCAAAGTATCTAGACGTTCATAGTGAACTCTAGTTCCTGGTATATA
TAAGGCTTTCATTTCTGGTAATTATCATGTGTTGAATATTTTTCTTGTCA
GTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTTTGAAGA
ACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGCCCAC
AACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATCTTTG
GCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATGTCAGGTTTGGGC
GTATTTGCTCTTTTTAAGCTTGAGCTCTAAAACTAAACTATTAACTTCGT
GATTTTCGACCTCCACAATTAAAATGTTTTGTCTTGTGTTGTtagtttaa
accatattttgaacAAGTGTTAAATTCAGCTAATTTCTTTGTAATGCAAA
CTTCTgataattttttgcattttctttggTTAGAATGTACTATATGGGGG
GGGGGCTTCTGATAATCCGGTATTGATCGATATTCCTGTGTTGACTTGTT
TTTCCGGTATTTGACAGTATTGAAAGGCCGAATTTCCGGTAATGTCGTCG
GAGCACTTGTTACCGGTACTGtatttgagaattttttctaCTGTATTCCG
GTGTCATGTTCCCTCGGAAGCCCCCGCTGCATGAATGCATTCTAATAAGT
ATCATCTCGAAGTATTGGTTCGTATTCGTAATTTTAATTATattgttctt
taaaaagatgatagaatttttaaatttattagaACTTATTATTTGTGTGT
TTGGGAGAAGAGATTAGTTTTTGTGGGTCTAATTCCAGAGTTGAAATCAG
TCACATTTTCTTTGTGCAAGGTTTTGGTCTTGTTTTCGCCGAAGATACTA
TTTTCGCTATTCTATGAAAATTAACTTATGTCACCTAATCTGTGAGGTCA
TTTTTGTGAAGACTGAATGACTGGAATTATTCAACGAATTGAACCTTGGT
AGAGGTTTTCGAGTCATTGTATTTTCCGGGTGTGTTGTAATTATGTTTTA
AGTACCTGTACTACTCATACAAAATTATCTTGACGAAAATACACTCTGTT
CCGCTATGATTTTCTTATTGATGCATTCTTGTTTGaggaaagaaaacttt
tttgttgataatttttgtttactttttttgtgatttttaataTATTTCGT
ACATCAGATTATTATTTATACttgtgtttctttttataaatatttcattt
catatttttaattttcgaattttgattCATAATATGCAATATAGCTTGTA
CATAATACTTGAACAAATTAAGCTGTAGTTACTTGAAATTGAACCTTCCC
AATGCTTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038259XLOC_038259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060948-exon-scaffold_350-1491911889:143134..143225TCONS_00060948-exon-scaffold_350-1491911889:143134..143225Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:143134..143225TCONS_00060948-exon-scaffold_350-1510915933:143134..143225Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:143134..143225TCONS_00060948-exon-scaffold_350-1575043694:143134..143225Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1491911889:145227..145394TCONS_00060948-exon-scaffold_350-1491911889:145227..145394Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:145227..145394TCONS_00060948-exon-scaffold_350-1510915933:145227..145394Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:145227..145394TCONS_00060948-exon-scaffold_350-1575043694:145227..145394Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1491911889:145631..145857TCONS_00060948-exon-scaffold_350-1491911889:145631..145857Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:145631..145857TCONS_00060948-exon-scaffold_350-1510915933:145631..145857Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:145631..145857TCONS_00060948-exon-scaffold_350-1575043694:145631..145857Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1491911889:146383..146476TCONS_00060948-exon-scaffold_350-1491911889:146383..146476Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:146383..146476TCONS_00060948-exon-scaffold_350-1510915933:146383..146476Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:146383..146476TCONS_00060948-exon-scaffold_350-1575043694:146383..146476Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1491911889:146543..146665TCONS_00060948-exon-scaffold_350-1491911889:146543..146665Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:146543..146665TCONS_00060948-exon-scaffold_350-1510915933:146543..146665Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:146543..146665TCONS_00060948-exon-scaffold_350-1575043694:146543..146665Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1491911889:147235..148494TCONS_00060948-exon-scaffold_350-1491911889:147235..148494Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1510915933:147235..148494TCONS_00060948-exon-scaffold_350-1510915933:147235..148494Clytia hemisphaericaexon
TCONS_00060948-exon-scaffold_350-1575043694:147235..148494TCONS_00060948-exon-scaffold_350-1575043694:147235..148494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:143134..148494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307792	0	0	0	2.47506	0.205146	5.57444	5.67754	4.64526	4.04256	3.18411	2.50327	2.65555	1.97744	0	0	0	0	0	0	0	0	0	0	6.54929	9.3031	0	0	0.328406	0
Blast
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BLAST of TCONS_00060948 vs. Swiss-Prot (Human)
Match: PRR5L (Proline-rich protein 5-like OS=Homo sapiens GN=PRR5L PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.282e-25
Identity = 61/187 (32.62%), Postives = 108/187 (57.75%), Query Frame = 2 
Query:   32 DFSNSKEWKSVVSGCTNIFNGKKLSNHDFVKMFETIRSISSSADVGLANESVSRNYEDAILSRGMIILREDIKEKPGHALLHKLGEVWTNFYQNILPTLQALFCSIP---MKVREVTLLAFRDNVLLKLKIEEALNINDHHIPKSIMQMFCVLFQASRDPEERERKNFDELERLMARVINPFLGSKG 583
              S+S  W SV +   N+F G  L +++   + E IR +  S ++G     ++  +++ +L++G+  + E IK   G   +  L EVW +F+   LPTLQA+F  +    + +R+++LL FRD VLLK+K+ + L +    +P SI+QM  +L Q+  +P     +++ +LE L+ +V++PFLG  G
Sbjct:   46 QLSSSSAWNSVQTAVINVFKGGGLQSNELYALNENIRRLLKS-ELG---SFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLIL-QSVHEPTG-PSESYLQLEELVKQVVSPFLGISG 226
The following BLAST results are available for this feature:
BLAST of TCONS_00060948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRR5L2.282e-2532.62Proline-rich protein 5-like OS=Homo sapiens GN=PRR... [more]
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