XLOC_034472 (gene) - C. hemisphaerica

Overview
NameXLOC_034472
Unique NameXLOC_034472
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_244:88567..94318+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034472 ID=XLOC_034472|Name=XLOC_034472|organism=Clytia hemisphaerica|type=gene|length=5752bp|location=Sequence derived from alignment at scaffold_244:88567..94318+ (Clytia hemisphaerica)
TTAAAATTAAATTATGTCTGAGATGACTCATTGTACTACAGAAACCTTTT
GCTTTTAAGTTGAAAGACAAATGTCCGAccccacataaaaatcaatcgga
catgtccgacccattttactttaaaagccttaggacatgtccgacccaaa
tcaattttGATCGGACAATGTGTCCGACCACCTAAATattgttatttcga
gccctgacgaagatgaaaagttaccatcaatcccgcgagtaaaagaaaat
ATTCCGACgttagtctacgaaaagtgcgcttgCGCGgcgaatatctcgca
aattaatatatgcataaaactgacaaaatcctttcttttttatgctaagg
tgacgtcaccatcgatcctgacttgacaatggagaaccaaatttggcaaa
gtttgtGTGATGCAAAAATTGTCGAAAgctgaatttattttcttttggtC
TAGTCACGCGTATGtcgagtagttttgtaataatttctttataattCATC
CGatttaatttcactgactttttggacctaccccggtggggtggaggtcc
tataaattaacccgtgttcgttagttagttagttcgttcgttagttacca
acttttctcgagattggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNtgaaccctcaaatgtgacggagcccgatttt
ggaaaaaaaaatttttccggccggtagaaccggaaatgtcccgaaaaaag
gggttttttgagattttctcgagactttatcattagttttttgcgatttt
ttgcacatagatgcacattagtactgccgaaaaggtgtcgaaaaccgttt
gccgaaaaaaaaaatttccggtctgtagaaccggaaatgtgccggaaatc
gtcgttttttcacatttccgtcacattttttcaacttatttaattgtttc
tttacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAGG
TTTATGGTGACACAGTATTGGCCTTTTTTCTGTCCAGTATTTcggtattt
tgagaaaaaaaatagggacaagctggagtttttacaagctcttatttgat
ttggttggtcattaagatgtaataaaaacgtagtcgtctaagaaaacggc
tattcttttttagaatcttccttacaatctagtttttatatttataaaaa
ctagattgctgacgtgtggaaaggaatgtcgccgtgactgatccttttgt
ttcgataataacatcaaagcgggaactaattttcttctggtttctttctt
tcctttttctttcttataagtTCCCGCTTTCCCTCACACTctccaagcgt
ggttagctcaagcggttagagcgtctgtctcataagcatgggtttccgag
ttcAATCCCGATTGgagtcaaatttttcaattcttcaaatttattttttt
aattctctgtctattataatgaaggtcaatcaaacaagtaactaACATAT
ATTACCTCCACTCTCTGtgtaaggtttagataagctatgatagcatcact
taataagaacttttttaattatCACAATGTTCTTGTGGTGATTGGTAATT
TGGCTCTCTGTAGTATCACTTGTCTCTGGTTCATCAATAATACCATCAGA
GGCTGTCAGACTAGATTTCGTTGAGGTAATCTTGTTAGTTTCATTTTTGG
TTTGGTCAATGGTTTGTTGCTGAATTCTTCGCCAACTTTGAGGATTCGAC
AGTTTAGGGACTCTGACGCAAACACTTCCGTGACGAACAAAGATAGTATT
GCCATCTTGACCGATAACTTTTCCTGGACCCATCCATTTGTTACTCGATT
CTCGTTTGTAGAATACATGATCACCGGTTTCAAACTTTTCGCTATGACTT
TGCAGCTAATGTCTTAAGGCTTGTCTGATAACAATTTAATCACACATTCA
CTGCTCACATCTTGAAGCCATTATTTGTATTCCAACCTTTCAGTAGGTTT
TCCTCTATCTTATATGCTTCAGAAAAACCGAAACATTGCCCTAAAAGCTC
AGCCTCACGAAGCCCCAGCTTATAATAATATAACCATACATTTTTATTGG
ATGTTGGAAATTTATTTGtcacatgataaaaatttcCGACTTCAATTCAA
ATGGTGAAACACCTTTTTTATGTATATAGATTATTGAAAGAATTAGATAT
AGTaagaaaagtttagacattggTAAAAATTTATTTCCTCAATAGAACAC
TGACACCCGCATTTCCAAGTCTGACTACACACGCTGTCAACTAGCTGAGT
TAGTGTGAAAACAGGCAGAAAAGGGATGGCAAATTGACTCATGCATCTTT
TGTGGAGGTGATTTATTTTCTGATCTGATGAAAACGTCTTTTTTACATAG
AAATGCTAGATGATCTTTTGCACAGCTCAATTCTGATTTATATAAAGTCT
TTCTGCACACAAATTTTAGTTGAATAAAAGTCTAaagaaaacagaagaaa
aaacaATGCTGCCAATTATATTTCAACAGACCTTTATTTTCAGGTTATTT
GTCAGTCATttgcaaaaaatagaaaaacagaaaaatgtttTGCTGATTGC
TTTATCTAAATACTaggtttgaaacttttttagCAATATTGTCAAAAACT
GTTTTTGACATGCTCTTGCAGGTGatgatttgtatttttcaggctCTATA
GTTGGCTTTTATCCCAATCCCAATTGGatgagatttaaaaaattatcaaa
aatcctCATTCATCCTCAGGGAGGGATCTCCCTACCCCAAAGATGCACAA
AtggttgaaaaataaaaatgaaacttttagtTTACACCCAAATTCAATTT
GGAATGGGTTTCAAAAAATTGGTATTAAACATCTTCCCCTATTTTCTTGC
TTCAAACATTATAAAAGGAACAGCACAAAGGaaaaagatatttaatgGGG
TCTTTCAACCCATCCCAGATTTGAGACTTGCATTACGCTGAGTTATTTAA
ATTAGTTGATTTTAACATTTCAGATTATTTAGTCATGCCTTTGCCATTAA
TCAAGCTAGGCTCACTCTTCATAAAAACTTTGTCAAAACCACTGGCTAAT
GCAATCAAAAGAAATGTGAAAGAACACCCAAGTTTGTCCAGCACAATTGC
CATTCCAGCTCAAGGTATAATGACTTCTatgtgtttgaaaaaaatttagt
tttaaaatttttctttgtagtAAAGAAACAATCTAGAGAACTATTTCAAA
TACAGTATAACCTAAGCATAAGTATAATTTCAGTTCAATATTTCTTTACC
atggcccggttgttcaaaagtggattagcgGCTGACTAGCTTAATTTTCT
ATTAAATCTCGATTAGCGCCGATTAGCACAGAACCGTTGGgtgttcaaaa
acaaaattagaCTTTTAAATCTGGATTAAATCCCAATTAAATCGGCCAAA
TTTTAATCCTGCTCTGACACAGGATTAACAAAGCTTTTTCCTACAAAAAA
GTGAAGTCGCTGCATTGcgagaaattcgaacgaaaaaagatttcgaaatg
ttttgaaaacatttcaaaaagtgacgtcaagattaagatttttgaaaaca
caggCAAAAGTGCACGATTAGTTAATCTAACGTTCAAACAACGGTAGTTA
ATCACTAGGATTAGCTAATCGAAATTTAATCACGATTAGCTCTAATNAAC
AATCTAGAGAACTATTTCAATATTTCTTTACCATGGCCcagttgttcaaa
agtggattagcgGCTGACTAGCTTAATTTTCTATTAAATCTCGATTAGCG
CCGCTTAGCACAGAACCGTTGGttgttcaaaaaaaaattaggctttTAAA
TCTGGATTAAATCCCAATTAAATCGGCCAAATTTTAATCCTGCTCTGACA
TAGGATTAACAAAGCTTTTTCCTACAAAAAAGTGAAGTCGCTGCATTGCG
Agaaattcgaacaaaaaaagatttcgaaatgttttgaaaacatttcaaaa
aatgacgtcaagattaagatttttgaaaacacaggCAAAAGTCCACGATT
AGTTAATCTAACCTTCAAACAACGGTAGTTAATCACTAGGATTAGCTAAT
CGAAATTTATTCACGATTAGCTCTAATGGGGATTTAATCTAATCAAGTTT
TGAACAACCGGGTCCATGACACTTTTGATGATCTTGCTGAATTGAAGTTC
TTTGAAGGAAATCCTTTCAACATTTGCAGGTCTTTTAAGGaatccaattt
tgaaattcttattcAATCGTAAAAAAAGATCAGAGATTGAAATTTCATTC
TATCTGCTCTAAAAcccttttttataaatataaatcaGATAAAAGAGCAA
AAAACCTTCAagggacttcaaattttcactgaaaaCCAAAGCGCTTAACC
AATGGCAGAATGTTGAGTGTAGGAAGTTTGACCCTGAAAAGATGAATTTg
tacattttcaaaaagaccAAAACTTGATTTCTTTTAATAGCATGTGTGAA
AAAGAAAAGCTAACAACTGATTTTAGTAATTCTAAAATTGGATCAAAGGT
AAACTAAATCATTTACAAGACGTTAAAGTCAAGTTGACTATttgaataca
ccgtttaggagtttCGCTATCTCCACCGTGTTCCACCGTagaaacggtag
gtaaaaatgtgcactttagtactgtggaaggttagagtaatgtaaacatt
atcaattttttcttttctttaaagatatgatttagatatttgaacatgat
atcaatgataattttatggatctcccctgaaaatttcacaaaaattcatc
caGATGAAAAGAATTCCTTACGAGAACCGTAATTTTACCTATCGTTTTTT
ACGGTGAGAGTGAAGTTTTCTATGGTTACGCGTGCGCAGTCAACAATTCT
AAACAGTGTATTCAGCTaccaaatcaatattttttctatGTTCTTTCTAA
GGTTATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTGGAA
TAAGAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACTTAG
GTGCAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttggatca
ttattttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGAAGC
AATTCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATATTAG
GACTACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAATGAA
ATCGACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGAAAAAC
AA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054711TCONS_00054711Clytia hemisphaericatranscript
TCONS_00054712TCONS_00054712Clytia hemisphaericatranscript
TCONS_00054713TCONS_00054713Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054711-proteinTCONS_00054711-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_244supercontigscaffold_244:88567..94318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.86	31.1	20.42	18.09	17.43	13.9	16.38	18.76	16.39	14	16.66	15.3	16.03	17.09	16.06	15.04	18.37	19.25	11.56	12.54	13.74	12.41	31.39	24.41	22.49	26.19	11.77	9.35	18.35	20.48