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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054712 ID=TCONS_00054712|Name=TCONS_00054712|organism=Clytia hemisphaerica|type=transcript|length=1849bp
TTTATGGTGACACAGTATTGGCCTTTTTTCTGTCCAGTATTTcggtattt
tgagaaaaaaaatagggacaagctggagtttttacaagctcttatttgat
ttggttggtcattaagatgtaataaaaacgtagtcgtctaagaaaacggc
tattcttttttagaatcttccttacaatctagtttttatatttataaaaa
ctagattgctgacgtgtggaaaggaatgtcgccgtgactgatccttttgt
ttcgataataacatcaaagcgggaactaattttcttctggtttctttctt
tcctttttctttcttataagtTCCCGCTTTCCCTCACACTctccaagcgt
ggttagctcaagcggttagagcgtctgtctcataagcatgggtttccgag
ttcAATCCCGATTGgagtcaaatttttcaattcttcaaatttattttttt
aattctctgtctattataatgaaggtcaatcaaacaagtaactaACATAT
ATTACCTCCACTCTCTGtgtaaggtttagataagctatgatagcatcact
taataagaacttttttaattatCACAATGTTCTTGTGGTGATTGGTAATT
TGGCTCTCTGTAGTATCACTTGTCTCTGGTTCATCAATAATACCATCAGA
GGCTGTCAGACTAGATTTCGTTGAGGTAATCTTGTTAGTTTCATTTTTGG
TTTGGTCAATGGTTTGTTGCTGAATTCTTCGCCAACTTTGAGGATTCGAC
AGTTTAGGGACTCTGACGCAAACACTTCCGTGACGAACAAAGATAGTATT
GCCATCTTGACCGATAACTTTTCCTGGACCCATCCATTTGTTACTCGATT
CTCGTTTGTAGAATACATGATCACCGGTTTCAAACTTTTCGCTATGACTT
TGCAGCTAATGTCTTAAGGCTTGTCTGATAACAATTTAATCACACATTCA
CTGCTCACATCTTGAAGCCATTATTTGTATTCCAACCTTTCAGTAGGTTT
TCCTCTATCTTATATGCTTCAGAAAAACCGAAACATTGCCCTAAAAGCTC
AGCCTCACGAAGCCCCAGCTTATAATAATATAACCATACATTTTTATTGG
ATGTTGGAAATTTATTTGtcacatgataaaaatttcCGACTTCAATTCAA
ATGGTGAAACACCTTTTTTATGTATATAGATTATTGAAAGAATTAGATAT
AGTaagaaaagtttagacattggTAAAAATTTATTTCCTCAATAGAACAC
TGACACCCGCATTTCCAAGTCTGACTACACACGCTGTCAACTAGCTGAGT
TAGTGTGAAAACAGGCAGAAAAGGGATGGCAAATTGACTCATGCATCTTT
TGTGGAGATTATTTAGTCATGCCTTTGCCATTAATCAAGCTAGGCTCACT
CTTCATAAAAACTTTGTCAAAACCACTGGCTAATGCAATCAAAAGAAATG
TGAAAGAACACCCAAGTTTGTCCAGCACAATTGCCATTCCAGCTCAAGGT
TATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTGGAATAA
GAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACTTAGGTG
CAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttggatcatta
ttttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGAAGCAAT
TCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATATTAGGAC
TACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAATGAAATC
GACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGAAAAACAA Run BLAST on NCBI transcript from alignment at scaffold_244:90017..94318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054712 ID=TCONS_00054712|Name=TCONS_00054712|organism=Clytia hemisphaerica|type=transcript|length=4302bp|location=Sequence derived from alignment at scaffold_244:90017..94318+ (Clytia hemisphaerica)
TTTATGGTGACACAGTATTGGCCTTTTTTCTGTCCAGTATTTcggtattt
tgagaaaaaaaatagggacaagctggagtttttacaagctcttatttgat
ttggttggtcattaagatgtaataaaaacgtagtcgtctaagaaaacggc
tattcttttttagaatcttccttacaatctagtttttatatttataaaaa
ctagattgctgacgtgtggaaaggaatgtcgccgtgactgatccttttgt
ttcgataataacatcaaagcgggaactaattttcttctggtttctttctt
tcctttttctttcttataagtTCCCGCTTTCCCTCACACTctccaagcgt
ggttagctcaagcggttagagcgtctgtctcataagcatgggtttccgag
ttcAATCCCGATTGgagtcaaatttttcaattcttcaaatttattttttt
aattctctgtctattataatgaaggtcaatcaaacaagtaactaACATAT
ATTACCTCCACTCTCTGtgtaaggtttagataagctatgatagcatcact
taataagaacttttttaattatCACAATGTTCTTGTGGTGATTGGTAATT
TGGCTCTCTGTAGTATCACTTGTCTCTGGTTCATCAATAATACCATCAGA
GGCTGTCAGACTAGATTTCGTTGAGGTAATCTTGTTAGTTTCATTTTTGG
TTTGGTCAATGGTTTGTTGCTGAATTCTTCGCCAACTTTGAGGATTCGAC
AGTTTAGGGACTCTGACGCAAACACTTCCGTGACGAACAAAGATAGTATT
GCCATCTTGACCGATAACTTTTCCTGGACCCATCCATTTGTTACTCGATT
CTCGTTTGTAGAATACATGATCACCGGTTTCAAACTTTTCGCTATGACTT
TGCAGCTAATGTCTTAAGGCTTGTCTGATAACAATTTAATCACACATTCA
CTGCTCACATCTTGAAGCCATTATTTGTATTCCAACCTTTCAGTAGGTTT
TCCTCTATCTTATATGCTTCAGAAAAACCGAAACATTGCCCTAAAAGCTC
AGCCTCACGAAGCCCCAGCTTATAATAATATAACCATACATTTTTATTGG
ATGTTGGAAATTTATTTGtcacatgataaaaatttcCGACTTCAATTCAA
ATGGTGAAACACCTTTTTTATGTATATAGATTATTGAAAGAATTAGATAT
AGTaagaaaagtttagacattggTAAAAATTTATTTCCTCAATAGAACAC
TGACACCCGCATTTCCAAGTCTGACTACACACGCTGTCAACTAGCTGAGT
TAGTGTGAAAACAGGCAGAAAAGGGATGGCAAATTGACTCATGCATCTTT
TGTGGAGGTGATTTATTTTCTGATCTGATGAAAACGTCTTTTTTACATAG
AAATGCTAGATGATCTTTTGCACAGCTCAATTCTGATTTATATAAAGTCT
TTCTGCACACAAATTTTAGTTGAATAAAAGTCTAaagaaaacagaagaaa
aaacaATGCTGCCAATTATATTTCAACAGACCTTTATTTTCAGGTTATTT
GTCAGTCATttgcaaaaaatagaaaaacagaaaaatgtttTGCTGATTGC
TTTATCTAAATACTaggtttgaaacttttttagCAATATTGTCAAAAACT
GTTTTTGACATGCTCTTGCAGGTGatgatttgtatttttcaggctCTATA
GTTGGCTTTTATCCCAATCCCAATTGGatgagatttaaaaaattatcaaa
aatcctCATTCATCCTCAGGGAGGGATCTCCCTACCCCAAAGATGCACAA
AtggttgaaaaataaaaatgaaacttttagtTTACACCCAAATTCAATTT
GGAATGGGTTTCAAAAAATTGGTATTAAACATCTTCCCCTATTTTCTTGC
TTCAAACATTATAAAAGGAACAGCACAAAGGaaaaagatatttaatgGGG
TCTTTCAACCCATCCCAGATTTGAGACTTGCATTACGCTGAGTTATTTAA
ATTAGTTGATTTTAACATTTCAGATTATTTAGTCATGCCTTTGCCATTAA
TCAAGCTAGGCTCACTCTTCATAAAAACTTTGTCAAAACCACTGGCTAAT
GCAATCAAAAGAAATGTGAAAGAACACCCAAGTTTGTCCAGCACAATTGC
CATTCCAGCTCAAGGTATAATGACTTCTatgtgtttgaaaaaaatttagt
tttaaaatttttctttgtagtAAAGAAACAATCTAGAGAACTATTTCAAA
TACAGTATAACCTAAGCATAAGTATAATTTCAGTTCAATATTTCTTTACC
atggcccggttgttcaaaagtggattagcgGCTGACTAGCTTAATTTTCT
ATTAAATCTCGATTAGCGCCGATTAGCACAGAACCGTTGGgtgttcaaaa
acaaaattagaCTTTTAAATCTGGATTAAATCCCAATTAAATCGGCCAAA
TTTTAATCCTGCTCTGACACAGGATTAACAAAGCTTTTTCCTACAAAAAA
GTGAAGTCGCTGCATTGcgagaaattcgaacgaaaaaagatttcgaaatg
ttttgaaaacatttcaaaaagtgacgtcaagattaagatttttgaaaaca
caggCAAAAGTGCACGATTAGTTAATCTAACGTTCAAACAACGGTAGTTA
ATCACTAGGATTAGCTAATCGAAATTTAATCACGATTAGCTCTAATNAAC
AATCTAGAGAACTATTTCAATATTTCTTTACCATGGCCcagttgttcaaa
agtggattagcgGCTGACTAGCTTAATTTTCTATTAAATCTCGATTAGCG
CCGCTTAGCACAGAACCGTTGGttgttcaaaaaaaaattaggctttTAAA
TCTGGATTAAATCCCAATTAAATCGGCCAAATTTTAATCCTGCTCTGACA
TAGGATTAACAAAGCTTTTTCCTACAAAAAAGTGAAGTCGCTGCATTGCG
Agaaattcgaacaaaaaaagatttcgaaatgttttgaaaacatttcaaaa
aatgacgtcaagattaagatttttgaaaacacaggCAAAAGTCCACGATT
AGTTAATCTAACCTTCAAACAACGGTAGTTAATCACTAGGATTAGCTAAT
CGAAATTTATTCACGATTAGCTCTAATGGGGATTTAATCTAATCAAGTTT
TGAACAACCGGGTCCATGACACTTTTGATGATCTTGCTGAATTGAAGTTC
TTTGAAGGAAATCCTTTCAACATTTGCAGGTCTTTTAAGGaatccaattt
tgaaattcttattcAATCGTAAAAAAAGATCAGAGATTGAAATTTCATTC
TATCTGCTCTAAAAcccttttttataaatataaatcaGATAAAAGAGCAA
AAAACCTTCAagggacttcaaattttcactgaaaaCCAAAGCGCTTAACC
AATGGCAGAATGTTGAGTGTAGGAAGTTTGACCCTGAAAAGATGAATTTg
tacattttcaaaaagaccAAAACTTGATTTCTTTTAATAGCATGTGTGAA
AAAGAAAAGCTAACAACTGATTTTAGTAATTCTAAAATTGGATCAAAGGT
AAACTAAATCATTTACAAGACGTTAAAGTCAAGTTGACTATttgaataca
ccgtttaggagtttCGCTATCTCCACCGTGTTCCACCGTagaaacggtag
gtaaaaatgtgcactttagtactgtggaaggttagagtaatgtaaacatt
atcaattttttcttttctttaaagatatgatttagatatttgaacatgat
atcaatgataattttatggatctcccctgaaaatttcacaaaaattcatc
caGATGAAAAGAATTCCTTACGAGAACCGTAATTTTACCTATCGTTTTTT
ACGGTGAGAGTGAAGTTTTCTATGGTTACGCGTGCGCAGTCAACAATTCT
AAACAGTGTATTCAGCTaccaaatcaatattttttctatGTTCTTTCTAA
GGTTATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTGGAA
TAAGAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACTTAG
GTGCAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttggatca
ttattttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGAAGC
AATTCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATATTAG
GACTACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAATGAA
ATCGACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGAAAAAC
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054712-exon-scaffold_244-1491911889:90017..91373 | TCONS_00054712-exon-scaffold_244-1491911889:90017..91373 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1510915933:90017..91373 | TCONS_00054712-exon-scaffold_244-1510915933:90017..91373 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1575043694:90017..91373 | TCONS_00054712-exon-scaffold_244-1575043694:90017..91373 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1491911889:92040..92180 | TCONS_00054712-exon-scaffold_244-1491911889:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1510915933:92040..92180 | TCONS_00054712-exon-scaffold_244-1510915933:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1575043694:92040..92180 | TCONS_00054712-exon-scaffold_244-1575043694:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1491911889:93968..94318 | TCONS_00054712-exon-scaffold_244-1491911889:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1510915933:93968..94318 | TCONS_00054712-exon-scaffold_244-1510915933:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054712-exon-scaffold_244-1575043694:93968..94318 | TCONS_00054712-exon-scaffold_244-1575043694:93968..94318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:90017..94318 + |
Blast
The following BLAST results are available for this feature:
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