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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054711 ID=TCONS_00054711|Name=TCONS_00054711|organism=Clytia hemisphaerica|type=transcript|length=951bp
TTAAAATTAAATTATGTCTGAGATGACTCATTGTACTACAGAAACCTTTT
GCTTTTAAGTTGAAAGACAAATGTCCGAccccacataaaaatcaatcgga
catgtccgacccattttactttaaaagccttaggacatgtccgacccaaa
tcaattttGATCGGACAATGTGTCCGACCACCTAAATattgttatttcga
gccctgacgaagatgaaaagttaccatcaatcccgcgagtaaaagaaaat
ATTCCGACgttagtctacgaaaagtgcgcttgCGCGgcgaatatctcgca
aattaatatatgcataaaactgacaaaatcctttcttttttatgctaagg
tgacgtcaccatcgatcctgacttgacaatggagaaccaaatttggcaaa
gtttgtGTGATGCAAAAATTGTCGAAAgctgaatttattttcttttggtC
TAGTCACGCATTATTTAGTCATGCCTTTGCCATTAATCAAGCTAGGCTCA
CTCTTCATAAAAACTTTGTCAAAACCACTGGCTAATGCAATCAAAAGAAA
TGTGAAAGAACACCCAAGTTTGTCCAGCACAATTGCCATTCCAGCTCAAG
GTTATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTGGAAT
AAGAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACTTAGG
TGCAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttggatcat
tattttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGAAGCA
ATTCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATATTAGG
ACTACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAATGAAA
TCGACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGAAAAACA
A Run BLAST on NCBI protein sequence of TCONS_00054711-protein >TCONS_00054711-protein ID=TCONS_00054711-protein|Name=TCONS_00054711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MPLPLIKLGSLFIKTLSKPLANAIKRNVKEHPSLSSTIAIPAQGYHQLEQ
TVRMKLMGWNKKIDVKPLSQDAAINLGAELLGELVIFSIALGSLFFEYKR
GHKKDKAKEAIQNQRLFNLQEQIDILGLQVKTQASKQIMLQNEIDTLRGT
LDQKQHG Run BLAST on NCBI transcript from alignment at scaffold_244:88567..94318+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054711 ID=TCONS_00054711|Name=TCONS_00054711|organism=Clytia hemisphaerica|type=transcript|length=5752bp|location=Sequence derived from alignment at scaffold_244:88567..94318+ (Clytia hemisphaerica)
TTAAAATTAAATTATGTCTGAGATGACTCATTGTACTACAGAAACCTTTT
GCTTTTAAGTTGAAAGACAAATGTCCGAccccacataaaaatcaatcgga
catgtccgacccattttactttaaaagccttaggacatgtccgacccaaa
tcaattttGATCGGACAATGTGTCCGACCACCTAAATattgttatttcga
gccctgacgaagatgaaaagttaccatcaatcccgcgagtaaaagaaaat
ATTCCGACgttagtctacgaaaagtgcgcttgCGCGgcgaatatctcgca
aattaatatatgcataaaactgacaaaatcctttcttttttatgctaagg
tgacgtcaccatcgatcctgacttgacaatggagaaccaaatttggcaaa
gtttgtGTGATGCAAAAATTGTCGAAAgctgaatttattttcttttggtC
TAGTCACGCGTATGtcgagtagttttgtaataatttctttataattCATC
CGatttaatttcactgactttttggacctaccccggtggggtggaggtcc
tataaattaacccgtgttcgttagttagttagttcgttcgttagttacca
acttttctcgagattggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNtgaaccctcaaatgtgacggagcccgatttt
ggaaaaaaaaatttttccggccggtagaaccggaaatgtcccgaaaaaag
gggttttttgagattttctcgagactttatcattagttttttgcgatttt
ttgcacatagatgcacattagtactgccgaaaaggtgtcgaaaaccgttt
gccgaaaaaaaaaatttccggtctgtagaaccggaaatgtgccggaaatc
gtcgttttttcacatttccgtcacattttttcaacttatttaattgtttc
tttacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAGG
TTTATGGTGACACAGTATTGGCCTTTTTTCTGTCCAGTATTTcggtattt
tgagaaaaaaaatagggacaagctggagtttttacaagctcttatttgat
ttggttggtcattaagatgtaataaaaacgtagtcgtctaagaaaacggc
tattcttttttagaatcttccttacaatctagtttttatatttataaaaa
ctagattgctgacgtgtggaaaggaatgtcgccgtgactgatccttttgt
ttcgataataacatcaaagcgggaactaattttcttctggtttctttctt
tcctttttctttcttataagtTCCCGCTTTCCCTCACACTctccaagcgt
ggttagctcaagcggttagagcgtctgtctcataagcatgggtttccgag
ttcAATCCCGATTGgagtcaaatttttcaattcttcaaatttattttttt
aattctctgtctattataatgaaggtcaatcaaacaagtaactaACATAT
ATTACCTCCACTCTCTGtgtaaggtttagataagctatgatagcatcact
taataagaacttttttaattatCACAATGTTCTTGTGGTGATTGGTAATT
TGGCTCTCTGTAGTATCACTTGTCTCTGGTTCATCAATAATACCATCAGA
GGCTGTCAGACTAGATTTCGTTGAGGTAATCTTGTTAGTTTCATTTTTGG
TTTGGTCAATGGTTTGTTGCTGAATTCTTCGCCAACTTTGAGGATTCGAC
AGTTTAGGGACTCTGACGCAAACACTTCCGTGACGAACAAAGATAGTATT
GCCATCTTGACCGATAACTTTTCCTGGACCCATCCATTTGTTACTCGATT
CTCGTTTGTAGAATACATGATCACCGGTTTCAAACTTTTCGCTATGACTT
TGCAGCTAATGTCTTAAGGCTTGTCTGATAACAATTTAATCACACATTCA
CTGCTCACATCTTGAAGCCATTATTTGTATTCCAACCTTTCAGTAGGTTT
TCCTCTATCTTATATGCTTCAGAAAAACCGAAACATTGCCCTAAAAGCTC
AGCCTCACGAAGCCCCAGCTTATAATAATATAACCATACATTTTTATTGG
ATGTTGGAAATTTATTTGtcacatgataaaaatttcCGACTTCAATTCAA
ATGGTGAAACACCTTTTTTATGTATATAGATTATTGAAAGAATTAGATAT
AGTaagaaaagtttagacattggTAAAAATTTATTTCCTCAATAGAACAC
TGACACCCGCATTTCCAAGTCTGACTACACACGCTGTCAACTAGCTGAGT
TAGTGTGAAAACAGGCAGAAAAGGGATGGCAAATTGACTCATGCATCTTT
TGTGGAGGTGATTTATTTTCTGATCTGATGAAAACGTCTTTTTTACATAG
AAATGCTAGATGATCTTTTGCACAGCTCAATTCTGATTTATATAAAGTCT
TTCTGCACACAAATTTTAGTTGAATAAAAGTCTAaagaaaacagaagaaa
aaacaATGCTGCCAATTATATTTCAACAGACCTTTATTTTCAGGTTATTT
GTCAGTCATttgcaaaaaatagaaaaacagaaaaatgtttTGCTGATTGC
TTTATCTAAATACTaggtttgaaacttttttagCAATATTGTCAAAAACT
GTTTTTGACATGCTCTTGCAGGTGatgatttgtatttttcaggctCTATA
GTTGGCTTTTATCCCAATCCCAATTGGatgagatttaaaaaattatcaaa
aatcctCATTCATCCTCAGGGAGGGATCTCCCTACCCCAAAGATGCACAA
AtggttgaaaaataaaaatgaaacttttagtTTACACCCAAATTCAATTT
GGAATGGGTTTCAAAAAATTGGTATTAAACATCTTCCCCTATTTTCTTGC
TTCAAACATTATAAAAGGAACAGCACAAAGGaaaaagatatttaatgGGG
TCTTTCAACCCATCCCAGATTTGAGACTTGCATTACGCTGAGTTATTTAA
ATTAGTTGATTTTAACATTTCAGATTATTTAGTCATGCCTTTGCCATTAA
TCAAGCTAGGCTCACTCTTCATAAAAACTTTGTCAAAACCACTGGCTAAT
GCAATCAAAAGAAATGTGAAAGAACACCCAAGTTTGTCCAGCACAATTGC
CATTCCAGCTCAAGGTATAATGACTTCTatgtgtttgaaaaaaatttagt
tttaaaatttttctttgtagtAAAGAAACAATCTAGAGAACTATTTCAAA
TACAGTATAACCTAAGCATAAGTATAATTTCAGTTCAATATTTCTTTACC
atggcccggttgttcaaaagtggattagcgGCTGACTAGCTTAATTTTCT
ATTAAATCTCGATTAGCGCCGATTAGCACAGAACCGTTGGgtgttcaaaa
acaaaattagaCTTTTAAATCTGGATTAAATCCCAATTAAATCGGCCAAA
TTTTAATCCTGCTCTGACACAGGATTAACAAAGCTTTTTCCTACAAAAAA
GTGAAGTCGCTGCATTGcgagaaattcgaacgaaaaaagatttcgaaatg
ttttgaaaacatttcaaaaagtgacgtcaagattaagatttttgaaaaca
caggCAAAAGTGCACGATTAGTTAATCTAACGTTCAAACAACGGTAGTTA
ATCACTAGGATTAGCTAATCGAAATTTAATCACGATTAGCTCTAATNAAC
AATCTAGAGAACTATTTCAATATTTCTTTACCATGGCCcagttgttcaaa
agtggattagcgGCTGACTAGCTTAATTTTCTATTAAATCTCGATTAGCG
CCGCTTAGCACAGAACCGTTGGttgttcaaaaaaaaattaggctttTAAA
TCTGGATTAAATCCCAATTAAATCGGCCAAATTTTAATCCTGCTCTGACA
TAGGATTAACAAAGCTTTTTCCTACAAAAAAGTGAAGTCGCTGCATTGCG
Agaaattcgaacaaaaaaagatttcgaaatgttttgaaaacatttcaaaa
aatgacgtcaagattaagatttttgaaaacacaggCAAAAGTCCACGATT
AGTTAATCTAACCTTCAAACAACGGTAGTTAATCACTAGGATTAGCTAAT
CGAAATTTATTCACGATTAGCTCTAATGGGGATTTAATCTAATCAAGTTT
TGAACAACCGGGTCCATGACACTTTTGATGATCTTGCTGAATTGAAGTTC
TTTGAAGGAAATCCTTTCAACATTTGCAGGTCTTTTAAGGaatccaattt
tgaaattcttattcAATCGTAAAAAAAGATCAGAGATTGAAATTTCATTC
TATCTGCTCTAAAAcccttttttataaatataaatcaGATAAAAGAGCAA
AAAACCTTCAagggacttcaaattttcactgaaaaCCAAAGCGCTTAACC
AATGGCAGAATGTTGAGTGTAGGAAGTTTGACCCTGAAAAGATGAATTTg
tacattttcaaaaagaccAAAACTTGATTTCTTTTAATAGCATGTGTGAA
AAAGAAAAGCTAACAACTGATTTTAGTAATTCTAAAATTGGATCAAAGGT
AAACTAAATCATTTACAAGACGTTAAAGTCAAGTTGACTATttgaataca
ccgtttaggagtttCGCTATCTCCACCGTGTTCCACCGTagaaacggtag
gtaaaaatgtgcactttagtactgtggaaggttagagtaatgtaaacatt
atcaattttttcttttctttaaagatatgatttagatatttgaacatgat
atcaatgataattttatggatctcccctgaaaatttcacaaaaattcatc
caGATGAAAAGAATTCCTTACGAGAACCGTAATTTTACCTATCGTTTTTT
ACGGTGAGAGTGAAGTTTTCTATGGTTACGCGTGCGCAGTCAACAATTCT
AAACAGTGTATTCAGCTaccaaatcaatattttttctatGTTCTTTCTAA
GGTTATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTGGAA
TAAGAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACTTAG
GTGCAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttggatca
ttattttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGAAGC
AATTCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATATTAG
GACTACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAATGAA
ATCGACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGAAAAAC
AA Coding sequence (CDS) from alignment at scaffold_244:88567..94318+ >TCONS_00054711 ID=TCONS_00054711|Name=TCONS_00054711|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_244:88567..94318+ (Clytia hemisphaerica)
ATGCCTTTGCCATTAATCAAGCTAGGCTCACTCTTCATAAAAACTTTGTC
AAAACCACTGGCTAATGCAATCAAAAGAAATGTGAAAGAACACCCAAGTT
TGTCCAGCACAATTGCCATTCCAGCTCAAGGTTATCATCAACTGGAACAA
ACTGTTCGGATGAAACTAATGGGTTGGAATAAGAAAATTGATGTAAAACC
TTTGTCACAAGATGCTGCCATCAACTTAGGTGCAGAACTACTAGGAGAAC
TTGTAATCTTTTCAATAGCACttggatcattattttttgaatataaAAGA
GGACATAAAAAAGACAAAGCAAAAGAAGCAATTCAAAACCAAAGATTATT
CAATTTACAAGAACAAATTGATATATTAGGACTACAAGTTAAAACACAAG
CATCTAAGCAAATAATGTTGCAGAATGAAATCGACACATTACGTGGTACA
TTGGACCAAAAGCAACATGGTTGAATGCCTTTGCCATTAATCAAGCTAGG
CTCACTCTTCATAAAAACTTTGTCAAAACCACTGGCTAATGCAATCAAAA
GAAATGTGAAAGAACACCCAAGTTTGTCCAGCACAATTGCCATTCCAGCT
CAAGGTTATCATCAACTGGAACAAACTGTTCGGATGAAACTAATGGGTTG
GAATAAGAAAATTGATGTAAAACCTTTGTCACAAGATGCTGCCATCAACT
TAGGTGCAGAACTACTAGGAGAACTTGTAATCTTTTCAATAGCACttgga
tcattattttttgaatataaAAGAGGACATAAAAAAGACAAAGCAAAAGA
AGCAATTCAAAACCAAAGATTATTCAATTTACAAGAACAAATTGATATAT
TAGGACTACAAGTTAAAACACAAGCATCTAAGCAAATAATGTTGCAGAAT
GAAATCGACACATTACGTGGTACATTGGACCAAAAGCAACATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054711-exon-scaffold_244-1491911889:88567..89025 | TCONS_00054711-exon-scaffold_244-1491911889:88567..89025 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1510915933:88567..89025 | TCONS_00054711-exon-scaffold_244-1510915933:88567..89025 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1575043694:88567..89025 | TCONS_00054711-exon-scaffold_244-1575043694:88567..89025 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1491911889:92040..92180 | TCONS_00054711-exon-scaffold_244-1491911889:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1510915933:92040..92180 | TCONS_00054711-exon-scaffold_244-1510915933:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1575043694:92040..92180 | TCONS_00054711-exon-scaffold_244-1575043694:92040..92180 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1491911889:93968..94318 | TCONS_00054711-exon-scaffold_244-1491911889:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1510915933:93968..94318 | TCONS_00054711-exon-scaffold_244-1510915933:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054711-exon-scaffold_244-1575043694:93968..94318 | TCONS_00054711-exon-scaffold_244-1575043694:93968..94318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:88567..94318 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010754 | OPA3-like |
Blast
The following BLAST results are available for this feature:
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