XLOC_032958 (gene) - C. hemisphaerica

Overview
NameXLOC_032958
Unique NameXLOC_032958
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_209:12416..16829+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_032958 ID=XLOC_032958|Name=XLOC_032958|organism=Clytia hemisphaerica|type=gene|length=4414bp|location=Sequence derived from alignment at scaffold_209:12416..16829+ (Clytia hemisphaerica)
GCCACAGCTAACTCTCAACATTCCGATATACCTACccactaacggtcttt
tcccgttacgcgtggcgactttgaatatggacgtcgcccctaAGTCCCCT
CCCTAGTTCAAGATGCTAGCGCAACTATAGTAAAAGTTTGGAAAGTTTTG
AAAGCActcaaaaagtttgtcaatatcCATGTACTGTTTGGTTTAAAAAA
ATACCCTTAACCTTTCAGATGTGAATAAGACAGTATAAGAAAATCATGGT
ATTTTTTTTACCTCATTTCAGTCTGGTCCGCTCAGTCATTGCTTTTGAAT
CTACCATTTTCGAGAGGTGCCCTTTTCGATTATGCGCAGCACTAAGAGCG
ATTTTCCCACATAATTTCCCACATAATTATAGCATGACTATTGCGCATGT
CAAAGACTAATTTATATCAAtagttattttgaaaaatatgtgcgCGGGAG
ATAATTTTTTAAAGCACATGGTGGTGGTAAGGTTTAGCACTGGTGGGATA
TTTCTTTGTCAAGTAAGGTAGACAGGTAGATGNGAAAGCAACTTTTTCTT
AAATAGTAAACACGACCGCGCATTCTATGTTCACCTTCTTGAACATTCAA
ATAGACCCGTCTATCTGGTGAACAAGGAATTCGAGTTTTTTCGAGATTTC
CGCAGTGAAGCGATAGACGGGATTCCGGTctaattttttccctacaaccc
ttctcccccccatcaacaatcaatgatgaatttattgtgttgtgtatttt
tgctaaatgctatattttctgactgattttgttcatttttcttttcgcat
tgctatcaatgctaactaactttcatcatcaggtaggtccattcagcatg
ttgcttgttttcatttttagaacttttgtaaaaaaaaggaaaaattactg
ctctattcacatattAGATagacctttttggacctacctcggagttccta
taaattaaccgatgtccgtccgtttgtttgttcgttcgtccatctgttac
cagcttttctcaggattggctcattagttttttctgatttttggcatttt
ccggccgaaaatgccagaaatatccCAGAAAAACtggatttttggcattt
tctcaaaattttatcattagttttttctgattttttgctcaaagatgcgt
attaacaatgcccaaaacatggctgagtccaatttttgagaaaaaatttt
ttccggcggaaaatgccagATATATGCCAGAAATAGccatttttctggat
tttcattggactttttccttacaattggttgttttttcattcaaaaacac
tattaatagcaatgcccaccatcaagcataaaattgatttttgaagccgg
ccggaactatttaaaaatcgtcggaacaacctattttcaccggaaagaca
gtatttcttgaaattcttgagctgtacttttacttttttttgacattttc
tcgaattttcattcttagttttttctgattttttgctcaaagatgcgtat
aagcaatgcccaaaacatagTTGAGTCCGCtttctgagaaaatttttgtt
tcggccgataataccggaaatatgccgaaaatggccgtttttgcagattt
ttattgGACCTTTTCcttacatttttgttttttcacacaaaaatattatt
gataacaatgccctcCATCaaacatgattcaattgtcaataaaactgatc
tttgcaaccggaactttcatTTCTatttccctactccccttccctctccc
ccgtcaacaatcaatgatggaatttaatgtatttgcattttcgctaaaca
gTATATTAtcttctgactgattgttttcatttttctcttttttgctatct
aactttcatcgttaggtaggtccattcagcatgttgcttgttgacTTTTG
ATGTCATTTATATTCAAGCAGccatttttcatactttttgcaaacttcaa
aaaactgattttttgtCCCATTACTGCAGGACTTTAAAGCTGACTTTAAA
GTGCTTACGTGCGGCATTGGGTACAAAGTGTCCAAATTTGTGTTTCCTGT
AATTTTTATATGAAGAGTTAGGGCTAAACTGTTTTGCACTACCAAGGGAA
GAagttttggcggaaagaaattttggcgagttTGGCTAATTGCCTAAAAA
TTATGCCAAAttaaccaaaaaaattttccaccatgtttaaattcaaaggt
catttgccaaaataaattttcgccaaatttgaaattaattcttccaaatt
gcaccaaaatgCTTGTGATGATACAAATAGGTTTTGGCTTGATTTCACGA
CCTAGTTGTTGAGCTGAATAGAAAAAAGAGTAGAATTAGTGAGAGTTTGC
GAGATTAGAGGATGATGAGTTGATTGGGACTAGAGATTAAGGAGGCACAT
CAGGAAAAGAACTTAGCTAAATAAAAAGCTTGAAATCAGTGGGAATTATG
AACAAGGGAAGGCAAAATTTAAACAATTGAAATGATTATACAAAATAAGG
GTAGTGctcatttttacaaaaagaatcaTAATTTTTAACGTCTTCAAACA
CTTTCCTAAACTAATTCTTACTTTATTCATTGAGCATTTGATCCCAGTCT
GGAAAGGAGGGAAATGTTACGCCGGAGCTGCCCCAACTTAGCTGGGAAAA
AGTTGAAGGCAGCAGATATCAAACCTCAAATCTACCGGACGGCGCACAAG
CTTCAATTTCCAGACTGGATTTGATCTAATcaattaaattcaataaatga
ccaataaattttaagttttatcttttttaaattttttctttccaaaatct
TACTTACTTCAAAGAGAGAAATGAGCACATATTCTTACATTTAGGATGGC
CTCAGTATCAACAGAAAGCAAATCTTCTAACAGAGAGATCAAGCCTATGA
CAtatgaagagaaaagaaaactgAGTCTTGACATAAACAAATTGCCAGGT
AAATAGTTATTATTTTATATTAATTATACATAATTTATCATTGTGCATGT
TGACTTATCTTCTTTTTAATAGCTCTGCAATGTTGAATTCATATCCCCtg
cactttttttatttttaagcatAGCCAGGCCGAGATTTGGGCTTAAAAAC
AATAGATCGttacagaaaaaaatagaaattgaagagtatgtaaaaaaaca
tgtaactcAATTAAAATAATTCCATGGGGAAACCAAAACTTTACTTAAGA
TTGCTTGGGACTTTATCTGAACTGTTTAATAATGGTCATAATAATAGCTA
Atagttttttctttgaaattttgcaagattttttttatcgaaaagacttt
tttttttcgtacaactctactctcgggtgcctaataaacgtacagaccaa
aataaacgtacataccaaaataaacgtacagggggaaataaaattggaat
taataaacgtacaggctgaaaaATACGTACAGGtgagaaatcagagctaa
aataaataaatgtacagggaaaaatctaccaatttttcaaaagtagaaca
TCCAGGTCGAAACTCGAATTTATAGCAAAACGTTCCAATTTACTCGTGTA
ACATTCGAAATCTCCCACAATacattcgaatgtaattaacggccTTTCTA
CACGtcttacttgaacaaaaaataataatttttttccagtATGAATCGGG
CGATATTgggtcaaaataaataaacgtataggagggaataaacgtacagg
cgggaaaattcttcaaaatgaataaacctacaggtcctaataaggtgcgt
acaggNgtacaggcgggaaaattcttcaaaatgaataaacgtacaggtcc
ttactaataaggtgcgtacaggcAGGAAATTTGAcgtgaaaaaaataaac
gtacatgtatgTTTATCAGGCACCCAAGAGTATCTTCAATAGTTGGAAAA
ATACTTAAATTGCTCAGTGTATTTCCAGAGTATTTACAAATTATAAAAGA
CTTGAAtaatttaaattgttttgaattttcattcagGTACTAAGCTTGGA
AACGTTGTTCACATTATACAGACAATGGAACCTTCTTCGAAGGATACTGG
ACAGGATGAAATTGAGATTgactttgaaaagttgaaaccTGAAACTCTGC
ATGAATTGAGAAATTATATTGATAAAACTTTAaatgatatttatttttaa
tgatatTCACAGCTCAAGCTTGTGTTAATAGCTTAAAGTTGGTAAGAGTT
AATTATTCTTAAGTGTTATGATTTACTTGACTAGCTTTGAGATTAATTTT
GTCTTGTATTCTTTTTTGAtacataaataaaaaaagaaaaatggcttTTT
CACTTCTTGTCCAAAGATGTGAAGGCATTGAAACAAGATTTTTCAACAAT
CTTAAAGAAGATTTATCAAGGAAAATCATTTGAATTTGAGTACTAATTAT
GCTTTATTGTCGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052042TCONS_00052042Clytia hemisphaericatranscript
TCONS_00052043TCONS_00052043Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_209supercontigscaffold_209:12416..16829 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.61	33.83	16.96	16.37	6.51	4.2	6.97	7.59	8.64	6.07	10.42	7.51	6.82	4.42	4.87	5.97	10.28	11.15	1.89	2.19	10.86	10.36	20.57	16.23	27.4	25.87	6.35	4.47	11.49	13.71