|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052042 ID=TCONS_00052042|Name=TCONS_00052042|organism=Clytia hemisphaerica|type=transcript|length=3376bp
GCCACAGCTAACTCTCAACATTCCGATATACCTACccactaacggtcttt
tcccgttacgcgtggcgactttgaatatggacgtcgcccctaAGTCCCCT
CCCTAGTTCAAGATGCTAGCGCAACTATAGTAAAAGTTTGGAAAGTTTTG
AAAGCActcaaaaagtttgtcaatatcCATGTACTGTTTGGTTTAAAAAA
ATACCCTTAACCTTTCAGATGTGAATAAGACAGTATAAGAAAATCATGGT
ATTTTTTTTACCTCATTTCAGTCTGGTCCGCTCAGTCATTGCTTTTGAAT
CTACCATTTTCGAGAGGTGCCCTTTTCGATTATGCGCAGCACTAAGAGCG
ATTTTCCCACATAATTTCCCACATAATTATAGCATGACTATTGCGCATGT
CAAAGACTAATTTATATCAAtagttattttgaaaaatatgtgcgCGGGAG
ATAATTTTTTAAAGCACATGGTGGTGGTAAGGTTTAGCACTGGTGGGATA
TTTCTTTGTCAAGTAAGGTAGACAGGTAGATGNGAAAGCAACTTTTTCTT
AAATAGTAAACACGACCGCGCATTCTATGTTCACCTTCTTGAACATTCAA
ATAGACCCGTCTATCTGGTGAACAAGGAATTCGAGTTTTTTCGAGATTTC
CGCAGTGAAGCGATAGACGGGATTCCGGTctaattttttccctacaaccc
ttctcccccccatcaacaatcaatgatgaatttattgtgttgtgtatttt
tgctaaatgctatattttctgactgattttgttcatttttcttttcgcat
tgctatcaatgctaactaactttcatcatcaggtaggtccattcagcatg
ttgcttgttttcatttttagaacttttgtaaaaaaaaggaaaaattactg
ctctattcacatattAGATagacctttttggacctacctcggagttccta
taaattaaccgatgtccgtccgtttgtttgttcgttcgtccatctgttac
cagcttttctcaggattggctcattagttttttctgatttttggcatttt
ccggccgaaaatgccagaaatatccCAGAAAAACtggatttttggcattt
tctcaaaattttatcattagttttttctgattttttgctcaaagatgcgt
attaacaatgcccaaaacatggctgagtccaatttttgagaaaaaatttt
ttccggcggaaaatgccagATATATGCCAGAAATAGccatttttctggat
tttcattggactttttccttacaattggttgttttttcattcaaaaacac
tattaatagcaatgcccaccatcaagcataaaattgatttttgaagccgg
ccggaactatttaaaaatcgtcggaacaacctattttcaccggaaagaca
gtatttcttgaaattcttgagctgtacttttacttttttttgacattttc
tcgaattttcattcttagttttttctgattttttgctcaaagatgcgtat
aagcaatgcccaaaacatagTTGAGTCCGCtttctgagaaaatttttgtt
tcggccgataataccggaaatatgccgaaaatggccgtttttgcagattt
ttattgGACCTTTTCcttacatttttgttttttcacacaaaaatattatt
gataacaatgccctcCATCaaacatgattcaattgtcaataaaactgatc
tttgcaaccggaactttcatTTCTatttccctactccccttccctctccc
ccgtcaacaatcaatgatggaatttaatgtatttgcattttcgctaaaca
gTATATTAtcttctgactgattgttttcatttttctcttttttgctatct
aactttcatcgttaggtaggtccattcagcatgttgcttgttgacTTTTG
ATGTCATTTATATTCAAGCAGccatttttcatactttttgcaaacttcaa
aaaactgattttttgtCCCATTACTGCAGGACTTTAAAGCTGACTTTAAA
GTGCTTACGTGCGGCATTGGGTACAAAGTGTCCAAATTTGTGTTTCCTGT
AATTTTTATATGAAGAGTTAGGGCTAAACTGTTTTGCACTACCAAGGGAA
GAagttttggcggaaagaaattttggcgagttTGGCTAATTGCCTAAAAA
TTATGCCAAAttaaccaaaaaaattttccaccatgtttaaattcaaaggt
catttgccaaaataaattttcgccaaatttgaaattaattcttccaaatt
gcaccaaaatgCTTGTGATGATACAAATAGGTTTTGGCTTGATTTCACGA
CCTAGTTGTTGAGCTGAATAGAAAAAAGAGTAGAATTAGTGAGAGTTTGC
GAGATTAGAGGATGATGAGTTGATTGGGACTAGAGATTAAGGAGGCACAT
CAGGAAAAGAACTTAGCTAAATAAAAAGCTTGAAATCAGTGGGAATTATG
AACAAGGGAAGGCAAAATTTAAACAATTGAAATGATTATACAAAATAAGG
GTAGTGctcatttttacaaaaagaatcaTAATTTTTAACGTCTTCAAACA
CTTTCCTAAACTAATTCTTACTTTATTCATTGAGCATTTGATCCCAGTCT
GGAAAGGAGGGAAATGTTACGCCGGAGCTGCCCCAACTTAGCTGGGAAAA
AGTTGAAGGCAGCAGATATCAAACCTCAAATCTACCGGACGGCGCACAAG
CTTCAATTTCCAGACTGGATTTGATCTAATcaattaaattcaataaatga
ccaataaattttaagttttatcttttttaaattttttctttccaaaatct
TACTTACTTCAAAGAGAGAAATGAGCACATATTCTTACATTTAGGATGGC
CTCAGTATCAACAGAAAGCAAATCTTCTAACAGAGAGATCAAGCCTATGA
CAtatgaagagaaaagaaaactgAGTCTTGACATAAACAAATTGCCAGGT
ACTAAGCTTGGAAACGTTGTTCACATTATACAGACAATGGAACCTTCTTC
GAAGGATACTGGACAGGATGAAATTGAGATTgactttgaaaagttgaaac
cTGAAACTCTGCATGAATTGAGAAATTATATTGATAAAACTTTAaatgat
atttatttttaatgatatTCACAGCTCAAGCTTGTGTTAATAGCTTAAAG
TTGGTAAGAGTTAATTATTCTTAAGTGTTATGATTTACTTGACTAGCTTT
GAGATTAATTTTGTCTTGTATTCTTTTTTGAtacataaataaaaaaagaa
aaatggcttTTTCACTTCTTGTCCAAAGATGTGAAGGCATTGAAACAAGA
TTTTTCAACAATCTTAAAGAAGATTTATCAAGGAAAATCATTTGAATTTG
AGTACTAATTATGCTTTATTGTCGTG Run BLAST on NCBI transcript from alignment at scaffold_209:12416..16829+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052042 ID=TCONS_00052042|Name=TCONS_00052042|organism=Clytia hemisphaerica|type=transcript|length=4414bp|location=Sequence derived from alignment at scaffold_209:12416..16829+ (Clytia hemisphaerica)
GCCACAGCTAACTCTCAACATTCCGATATACCTACccactaacggtcttt
tcccgttacgcgtggcgactttgaatatggacgtcgcccctaAGTCCCCT
CCCTAGTTCAAGATGCTAGCGCAACTATAGTAAAAGTTTGGAAAGTTTTG
AAAGCActcaaaaagtttgtcaatatcCATGTACTGTTTGGTTTAAAAAA
ATACCCTTAACCTTTCAGATGTGAATAAGACAGTATAAGAAAATCATGGT
ATTTTTTTTACCTCATTTCAGTCTGGTCCGCTCAGTCATTGCTTTTGAAT
CTACCATTTTCGAGAGGTGCCCTTTTCGATTATGCGCAGCACTAAGAGCG
ATTTTCCCACATAATTTCCCACATAATTATAGCATGACTATTGCGCATGT
CAAAGACTAATTTATATCAAtagttattttgaaaaatatgtgcgCGGGAG
ATAATTTTTTAAAGCACATGGTGGTGGTAAGGTTTAGCACTGGTGGGATA
TTTCTTTGTCAAGTAAGGTAGACAGGTAGATGNGAAAGCAACTTTTTCTT
AAATAGTAAACACGACCGCGCATTCTATGTTCACCTTCTTGAACATTCAA
ATAGACCCGTCTATCTGGTGAACAAGGAATTCGAGTTTTTTCGAGATTTC
CGCAGTGAAGCGATAGACGGGATTCCGGTctaattttttccctacaaccc
ttctcccccccatcaacaatcaatgatgaatttattgtgttgtgtatttt
tgctaaatgctatattttctgactgattttgttcatttttcttttcgcat
tgctatcaatgctaactaactttcatcatcaggtaggtccattcagcatg
ttgcttgttttcatttttagaacttttgtaaaaaaaaggaaaaattactg
ctctattcacatattAGATagacctttttggacctacctcggagttccta
taaattaaccgatgtccgtccgtttgtttgttcgttcgtccatctgttac
cagcttttctcaggattggctcattagttttttctgatttttggcatttt
ccggccgaaaatgccagaaatatccCAGAAAAACtggatttttggcattt
tctcaaaattttatcattagttttttctgattttttgctcaaagatgcgt
attaacaatgcccaaaacatggctgagtccaatttttgagaaaaaatttt
ttccggcggaaaatgccagATATATGCCAGAAATAGccatttttctggat
tttcattggactttttccttacaattggttgttttttcattcaaaaacac
tattaatagcaatgcccaccatcaagcataaaattgatttttgaagccgg
ccggaactatttaaaaatcgtcggaacaacctattttcaccggaaagaca
gtatttcttgaaattcttgagctgtacttttacttttttttgacattttc
tcgaattttcattcttagttttttctgattttttgctcaaagatgcgtat
aagcaatgcccaaaacatagTTGAGTCCGCtttctgagaaaatttttgtt
tcggccgataataccggaaatatgccgaaaatggccgtttttgcagattt
ttattgGACCTTTTCcttacatttttgttttttcacacaaaaatattatt
gataacaatgccctcCATCaaacatgattcaattgtcaataaaactgatc
tttgcaaccggaactttcatTTCTatttccctactccccttccctctccc
ccgtcaacaatcaatgatggaatttaatgtatttgcattttcgctaaaca
gTATATTAtcttctgactgattgttttcatttttctcttttttgctatct
aactttcatcgttaggtaggtccattcagcatgttgcttgttgacTTTTG
ATGTCATTTATATTCAAGCAGccatttttcatactttttgcaaacttcaa
aaaactgattttttgtCCCATTACTGCAGGACTTTAAAGCTGACTTTAAA
GTGCTTACGTGCGGCATTGGGTACAAAGTGTCCAAATTTGTGTTTCCTGT
AATTTTTATATGAAGAGTTAGGGCTAAACTGTTTTGCACTACCAAGGGAA
GAagttttggcggaaagaaattttggcgagttTGGCTAATTGCCTAAAAA
TTATGCCAAAttaaccaaaaaaattttccaccatgtttaaattcaaaggt
catttgccaaaataaattttcgccaaatttgaaattaattcttccaaatt
gcaccaaaatgCTTGTGATGATACAAATAGGTTTTGGCTTGATTTCACGA
CCTAGTTGTTGAGCTGAATAGAAAAAAGAGTAGAATTAGTGAGAGTTTGC
GAGATTAGAGGATGATGAGTTGATTGGGACTAGAGATTAAGGAGGCACAT
CAGGAAAAGAACTTAGCTAAATAAAAAGCTTGAAATCAGTGGGAATTATG
AACAAGGGAAGGCAAAATTTAAACAATTGAAATGATTATACAAAATAAGG
GTAGTGctcatttttacaaaaagaatcaTAATTTTTAACGTCTTCAAACA
CTTTCCTAAACTAATTCTTACTTTATTCATTGAGCATTTGATCCCAGTCT
GGAAAGGAGGGAAATGTTACGCCGGAGCTGCCCCAACTTAGCTGGGAAAA
AGTTGAAGGCAGCAGATATCAAACCTCAAATCTACCGGACGGCGCACAAG
CTTCAATTTCCAGACTGGATTTGATCTAATcaattaaattcaataaatga
ccaataaattttaagttttatcttttttaaattttttctttccaaaatct
TACTTACTTCAAAGAGAGAAATGAGCACATATTCTTACATTTAGGATGGC
CTCAGTATCAACAGAAAGCAAATCTTCTAACAGAGAGATCAAGCCTATGA
CAtatgaagagaaaagaaaactgAGTCTTGACATAAACAAATTGCCAGGT
AAATAGTTATTATTTTATATTAATTATACATAATTTATCATTGTGCATGT
TGACTTATCTTCTTTTTAATAGCTCTGCAATGTTGAATTCATATCCCCtg
cactttttttatttttaagcatAGCCAGGCCGAGATTTGGGCTTAAAAAC
AATAGATCGttacagaaaaaaatagaaattgaagagtatgtaaaaaaaca
tgtaactcAATTAAAATAATTCCATGGGGAAACCAAAACTTTACTTAAGA
TTGCTTGGGACTTTATCTGAACTGTTTAATAATGGTCATAATAATAGCTA
Atagttttttctttgaaattttgcaagattttttttatcgaaaagacttt
tttttttcgtacaactctactctcgggtgcctaataaacgtacagaccaa
aataaacgtacataccaaaataaacgtacagggggaaataaaattggaat
taataaacgtacaggctgaaaaATACGTACAGGtgagaaatcagagctaa
aataaataaatgtacagggaaaaatctaccaatttttcaaaagtagaaca
TCCAGGTCGAAACTCGAATTTATAGCAAAACGTTCCAATTTACTCGTGTA
ACATTCGAAATCTCCCACAATacattcgaatgtaattaacggccTTTCTA
CACGtcttacttgaacaaaaaataataatttttttccagtATGAATCGGG
CGATATTgggtcaaaataaataaacgtataggagggaataaacgtacagg
cgggaaaattcttcaaaatgaataaacctacaggtcctaataaggtgcgt
acaggNgtacaggcgggaaaattcttcaaaatgaataaacgtacaggtcc
ttactaataaggtgcgtacaggcAGGAAATTTGAcgtgaaaaaaataaac
gtacatgtatgTTTATCAGGCACCCAAGAGTATCTTCAATAGTTGGAAAA
ATACTTAAATTGCTCAGTGTATTTCCAGAGTATTTACAAATTATAAAAGA
CTTGAAtaatttaaattgttttgaattttcattcagGTACTAAGCTTGGA
AACGTTGTTCACATTATACAGACAATGGAACCTTCTTCGAAGGATACTGG
ACAGGATGAAATTGAGATTgactttgaaaagttgaaaccTGAAACTCTGC
ATGAATTGAGAAATTATATTGATAAAACTTTAaatgatatttatttttaa
tgatatTCACAGCTCAAGCTTGTGTTAATAGCTTAAAGTTGGTAAGAGTT
AATTATTCTTAAGTGTTATGATTTACTTGACTAGCTTTGAGATTAATTTT
GTCTTGTATTCTTTTTTGAtacataaataaaaaaagaaaaatggcttTTT
CACTTCTTGTCCAAAGATGTGAAGGCATTGAAACAAGATTTTTCAACAAT
CTTAAAGAAGATTTATCAAGGAAAATCATTTGAATTTGAGTACTAATTAT
GCTTTATTGTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052042-exon-scaffold_209-1491911889:12416..15363 | TCONS_00052042-exon-scaffold_209-1491911889:12416..15363 | Clytia hemisphaerica | exon |
| TCONS_00052042-exon-scaffold_209-1510915933:12416..15363 | TCONS_00052042-exon-scaffold_209-1510915933:12416..15363 | Clytia hemisphaerica | exon |
| TCONS_00052042-exon-scaffold_209-1575043694:12416..15363 | TCONS_00052042-exon-scaffold_209-1575043694:12416..15363 | Clytia hemisphaerica | exon |
| TCONS_00052042-exon-scaffold_209-1491911889:16402..16829 | TCONS_00052042-exon-scaffold_209-1491911889:16402..16829 | Clytia hemisphaerica | exon |
| TCONS_00052042-exon-scaffold_209-1510915933:16402..16829 | TCONS_00052042-exon-scaffold_209-1510915933:16402..16829 | Clytia hemisphaerica | exon |
| TCONS_00052042-exon-scaffold_209-1575043694:16402..16829 | TCONS_00052042-exon-scaffold_209-1575043694:16402..16829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:12416..16829 + |
Blast
BLAST of TCONS_00052042 vs. Swiss-Prot (Human)
Match: BRD4 (Bromodomain-containing protein 4 OS=Homo sapiens GN=BRD4 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 2.548e-21 Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 2
Query: 2888 IKPMTYEEKRKLSLDINKLPGTKLGNVVHIIQTMEPSSKDTGQDEIEIDFEKLKPETLHELRNYIDKTL 3094
KPM+YEEKR+LSLDINKLPG KLG VVHIIQ+ EPS K++ DEIEIDFE LKP TL EL Y+ L
Sbjct: 607 CKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCL 675
The following BLAST results are available for this feature:
|
