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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052043 ID=TCONS_00052043|Name=TCONS_00052043|organism=Clytia hemisphaerica|type=transcript|length=569bp
cgcattgctatcaatgctaactaactttcatcatcagGATGGCCTCAGTA
TCAACAGAAAGCAAATCTTCTAACAGAGAGATCAAGCCTATGACAtatga
agagaaaagaaaactgAGTCTTGACATAAACAAATTGCCAGGTACTAAGC
TTGGAAACGTTGTTCACATTATACAGACAATGGAACCTTCTTCGAAGGAT
ACTGGACAGGATGAAATTGAGATTgactttgaaaagttgaaaccTGAAAC
TCTGCATGAATTGAGAAATTATATTGATAAAACTTTAaatgatatttatt
tttaatgatatTCACAGCTCAAGCTTGTGTTAATAGCTTAAAGTTGGTAA
GAGTTAATTATTCTTAAGTGTTATGATTTACTTGACTAGCTTTGAGATTA
ATTTTGTCTTGTATTCTTTTTTGAtacataaataaaaaaagaaaaatggc
ttTTTCACTTCTTGTCCAAAGATGTGAAGGCATTGAAACAAGATTTTTCA
ACAATCTTAAAGAAGATTTATCAAGGAAAATCATTTGAATTTGAGTACTA
ATTATGCTTTATTGTCGTG Run BLAST on NCBI transcript from alignment at scaffold_209:13211..16829+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052043 ID=TCONS_00052043|Name=TCONS_00052043|organism=Clytia hemisphaerica|type=transcript|length=3619bp|location=Sequence derived from alignment at scaffold_209:13211..16829+ (Clytia hemisphaerica)
cgcattgctatcaatgctaactaactttcatcatcaggtaggtccattca
gcatgttgcttgttttcatttttagaacttttgtaaaaaaaaggaaaaat
tactgctctattcacatattAGATagacctttttggacctacctcggagt
tcctataaattaaccgatgtccgtccgtttgtttgttcgttcgtccatct
gttaccagcttttctcaggattggctcattagttttttctgatttttggc
attttccggccgaaaatgccagaaatatccCAGAAAAACtggatttttgg
cattttctcaaaattttatcattagttttttctgattttttgctcaaaga
tgcgtattaacaatgcccaaaacatggctgagtccaatttttgagaaaaa
attttttccggcggaaaatgccagATATATGCCAGAAATAGccatttttc
tggattttcattggactttttccttacaattggttgttttttcattcaaa
aacactattaatagcaatgcccaccatcaagcataaaattgatttttgaa
gccggccggaactatttaaaaatcgtcggaacaacctattttcaccggaa
agacagtatttcttgaaattcttgagctgtacttttacttttttttgaca
ttttctcgaattttcattcttagttttttctgattttttgctcaaagatg
cgtataagcaatgcccaaaacatagTTGAGTCCGCtttctgagaaaattt
ttgtttcggccgataataccggaaatatgccgaaaatggccgtttttgca
gatttttattgGACCTTTTCcttacatttttgttttttcacacaaaaata
ttattgataacaatgccctcCATCaaacatgattcaattgtcaataaaac
tgatctttgcaaccggaactttcatTTCTatttccctactccccttccct
ctcccccgtcaacaatcaatgatggaatttaatgtatttgcattttcgct
aaacagTATATTAtcttctgactgattgttttcatttttctcttttttgc
tatctaactttcatcgttaggtaggtccattcagcatgttgcttgttgac
TTTTGATGTCATTTATATTCAAGCAGccatttttcatactttttgcaaac
ttcaaaaaactgattttttgtCCCATTACTGCAGGACTTTAAAGCTGACT
TTAAAGTGCTTACGTGCGGCATTGGGTACAAAGTGTCCAAATTTGTGTTT
CCTGTAATTTTTATATGAAGAGTTAGGGCTAAACTGTTTTGCACTACCAA
GGGAAGAagttttggcggaaagaaattttggcgagttTGGCTAATTGCCT
AAAAATTATGCCAAAttaaccaaaaaaattttccaccatgtttaaattca
aaggtcatttgccaaaataaattttcgccaaatttgaaattaattcttcc
aaattgcaccaaaatgCTTGTGATGATACAAATAGGTTTTGGCTTGATTT
CACGACCTAGTTGTTGAGCTGAATAGAAAAAAGAGTAGAATTAGTGAGAG
TTTGCGAGATTAGAGGATGATGAGTTGATTGGGACTAGAGATTAAGGAGG
CACATCAGGAAAAGAACTTAGCTAAATAAAAAGCTTGAAATCAGTGGGAA
TTATGAACAAGGGAAGGCAAAATTTAAACAATTGAAATGATTATACAAAA
TAAGGGTAGTGctcatttttacaaaaagaatcaTAATTTTTAACGTCTTC
AAACACTTTCCTAAACTAATTCTTACTTTATTCATTGAGCATTTGATCCC
AGTCTGGAAAGGAGGGAAATGTTACGCCGGAGCTGCCCCAACTTAGCTGG
GAAAAAGTTGAAGGCAGCAGATATCAAACCTCAAATCTACCGGACGGCGC
ACAAGCTTCAATTTCCAGACTGGATTTGATCTAATcaattaaattcaata
aatgaccaataaattttaagttttatcttttttaaattttttctttccaa
aatctTACTTACTTCAAAGAGAGAAATGAGCACATATTCTTACATTTAGG
ATGGCCTCAGTATCAACAGAAAGCAAATCTTCTAACAGAGAGATCAAGCC
TATGACAtatgaagagaaaagaaaactgAGTCTTGACATAAACAAATTGC
CAGGTAAATAGTTATTATTTTATATTAATTATACATAATTTATCATTGTG
CATGTTGACTTATCTTCTTTTTAATAGCTCTGCAATGTTGAATTCATATC
CCCtgcactttttttatttttaagcatAGCCAGGCCGAGATTTGGGCTTA
AAAACAATAGATCGttacagaaaaaaatagaaattgaagagtatgtaaaa
aaacatgtaactcAATTAAAATAATTCCATGGGGAAACCAAAACTTTACT
TAAGATTGCTTGGGACTTTATCTGAACTGTTTAATAATGGTCATAATAAT
AGCTAAtagttttttctttgaaattttgcaagattttttttatcgaaaag
acttttttttttcgtacaactctactctcgggtgcctaataaacgtacag
accaaaataaacgtacataccaaaataaacgtacagggggaaataaaatt
ggaattaataaacgtacaggctgaaaaATACGTACAGGtgagaaatcaga
gctaaaataaataaatgtacagggaaaaatctaccaatttttcaaaagta
gaacaTCCAGGTCGAAACTCGAATTTATAGCAAAACGTTCCAATTTACTC
GTGTAACATTCGAAATCTCCCACAATacattcgaatgtaattaacggccT
TTCTACACGtcttacttgaacaaaaaataataatttttttccagtATGAA
TCGGGCGATATTgggtcaaaataaataaacgtataggagggaataaacgt
acaggcgggaaaattcttcaaaatgaataaacctacaggtcctaataagg
tgcgtacaggNgtacaggcgggaaaattcttcaaaatgaataaacgtaca
ggtccttactaataaggtgcgtacaggcAGGAAATTTGAcgtgaaaaaaa
taaacgtacatgtatgTTTATCAGGCACCCAAGAGTATCTTCAATAGTTG
GAAAAATACTTAAATTGCTCAGTGTATTTCCAGAGTATTTACAAATTATA
AAAGACTTGAAtaatttaaattgttttgaattttcattcagGTACTAAGC
TTGGAAACGTTGTTCACATTATACAGACAATGGAACCTTCTTCGAAGGAT
ACTGGACAGGATGAAATTGAGATTgactttgaaaagttgaaaccTGAAAC
TCTGCATGAATTGAGAAATTATATTGATAAAACTTTAaatgatatttatt
tttaatgatatTCACAGCTCAAGCTTGTGTTAATAGCTTAAAGTTGGTAA
GAGTTAATTATTCTTAAGTGTTATGATTTACTTGACTAGCTTTGAGATTA
ATTTTGTCTTGTATTCTTTTTTGAtacataaataaaaaaagaaaaatggc
ttTTTCACTTCTTGTCCAAAGATGTGAAGGCATTGAAACAAGATTTTTCA
ACAATCTTAAAGAAGATTTATCAAGGAAAATCATTTGAATTTGAGTACTA
ATTATGCTTTATTGTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052043-exon-scaffold_209-1491911889:13211..13247 | TCONS_00052043-exon-scaffold_209-1491911889:13211..13247 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1510915933:13211..13247 | TCONS_00052043-exon-scaffold_209-1510915933:13211..13247 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1575043694:13211..13247 | TCONS_00052043-exon-scaffold_209-1575043694:13211..13247 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1491911889:15260..15363 | TCONS_00052043-exon-scaffold_209-1491911889:15260..15363 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1510915933:15260..15363 | TCONS_00052043-exon-scaffold_209-1510915933:15260..15363 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1575043694:15260..15363 | TCONS_00052043-exon-scaffold_209-1575043694:15260..15363 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1491911889:16402..16829 | TCONS_00052043-exon-scaffold_209-1491911889:16402..16829 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1510915933:16402..16829 | TCONS_00052043-exon-scaffold_209-1510915933:16402..16829 | Clytia hemisphaerica | exon |
| TCONS_00052043-exon-scaffold_209-1575043694:16402..16829 | TCONS_00052043-exon-scaffold_209-1575043694:16402..16829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:13211..16829 + |
Blast
BLAST of TCONS_00052043 vs. Swiss-Prot (Human)
Match: BRD4 (Bromodomain-containing protein 4 OS=Homo sapiens GN=BRD4 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 4.554e-24 Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 3
Query: 81 IKPMTYEEKRKLSLDINKLPGTKLGNVVHIIQTMEPSSKDTGQDEIEIDFEKLKPETLHELRNYIDKTL 287
KPM+YEEKR+LSLDINKLPG KLG VVHIIQ+ EPS K++ DEIEIDFE LKP TL EL Y+ L
Sbjct: 607 CKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCL 675
The following BLAST results are available for this feature:
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