XLOC_032000 (gene) - C. hemisphaerica

Overview
NameXLOC_032000
Unique NameXLOC_032000
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_179:437543..441257+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_032000 ID=XLOC_032000|Name=XLOC_032000|organism=Clytia hemisphaerica|type=gene|length=3715bp|location=Sequence derived from alignment at scaffold_179:437543..441257+ (Clytia hemisphaerica)
TTCAAACATATCTCACAAAAGCTCACAGACTAATATCATAAAATATTATA
AAGCAAGATGAAGGGTTTCAAAAAGCATCATTAAAGACTTCTTAGGAAAA
GGACATACAAGGtatatcaaatcataacaaaaatGAAGAGCCTTATTTTA
TTTTGTGTGTTCGCTTTCGCGTCTCTTTCATACACAGAAGGTAAGTTCCA
GTAAGCTTCTGAATTCAGCGCTCGTAAGTTTTTAATCTAAAacaggcacg
acgcaacgggtacaGCGGTCGCTGTACtagattttcataaaaaaagaaat
tttcctcttcgtcggtaaaatcgcttaaatttcctcattcgccgtaccag
atataaaaagcttccatCGTGCCTCTAAAAGGACATTATAGCCCCCAACA
CCAACATCACATTCATTGAGTTCTTACACCATTGTTAGGGACTGCAGTAG
AAGTCTGCGCTCCGGGATGTATTTTCCTCGGGTAGCGTTTTGATATAAGC
AGAGTATAATCAGTCACGGCGTGGGATTTAGAGTTGATAGGTGTATTAAC
CATGCTTttaatttaccattttcattTGATCTTAACAACAGGGAAGAAGC
ACAAATTGGTAGCGTATTGGGGACAAAATGCCGTATACAATCTGAAGAAA
GAAAAGcaatactttgaaaaaatttatcGCATTTTTGTCGTCATAGTAac
tatgacgtcatcgttttggCATTTATGCATGTTTTCTTTGATGCAAGACA
AAAAGGTAAGACTCGTATCTTTATAACGTAAAAATCTGCTTTGCAAAGGG
TCTTAAGCCATATTCACGGCAGTCGAAATGATTAAAGTAACAAAAACACG
ATTCATATTGAGagtaatttgaatttgaattctaCTGTAATTCAATGCAA
AAATATGAACGTCTTTATATGACCTTTATGATATTACTTTTAGATTCTAT
GCCTGGTATGAATTTCGCATTCCACTGTGAGACACCGTTAAGCCAAGAAT
ATCCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTATAAAGGAATGT
CAAGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGAGCCACAGGAGG
ATATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGCTCAACGGGTGT
GGGATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTCGACCTTTCGGA
AGGTAgtttaattgttttcttttgtgaCAGATATTCATTCATTTCATAAT
ATATAGTTAAACTCTTCCTCTTGAACGTATAgggttttctgaaaaaaaaa
tgtccTTATAAATTAGGTTTTGTGATGAATTTCTAATTTGgacacacgtt
tttttttaataaagacatccaaaatttttgaagcctattcgtaggatatt
cttaacttttggagtttaagcctaaaaatattcttaacatgttctttttt
CCACCACTTTAagagtatttttgcccatttccTTAataaatcaggtgttt
tagagtctgcaaagcatTAAAATATGTtcctaatattttggccatcgaag
ccttgttcttatatagttttttcttacaaaaaaggtGTATGTAAGGGTAT
ACCATTAGAACGTTAATTAAAGGTCCGCAACGCAGAGCTTAGATTTTGAT
GTGTTACATTTACCTTTCCAGTGCTGTTTTGGATGGTGTTGATTTGGACA
TTGAGGGTGGTTCACACATTGGTTACACACAATTCACTCGAACATTACGT
AGATGCATGGATGCTGATCACTCCAAGAAATACATCATTGCAGCAGCTCC
TCAATGCCCCTTCCCTGATCATTACCTAGGCCCAGCCCCCGGAAAAGCAT
TCACAGACGCGGCTACATGTTTCGATGAGATTTACATCCAGTTTTACAAC
AATTATTGTCACACAGGTAACATTTGATTAACAGAGCCTCGTTTTGGTCT
TTGATCGAGGTTGGTTTAAAGGCGTTTCCCATATAATTTCCGTGCTAATA
CATGTTTAAAATAAAACACTGAATCAAAATTcgatactttgaaaaaaatg
aaataaacagaCACACTTGtgttgaatacaccttttcgaccgtagtcgcg
cggtcaggcgcgtgccacttaattatttaattatcccccaaaactcgatc
caatccttttttgacacactTTTCTATTGtgtataggtgcgaaaaaagga
ctgggacggttttagtgggataaagcggacaaaaaattcccgcacggcaa
ttggcggctacggtcgtaAAGGTGTATTACATAATACTACTTGAATCTTA
CCTTGTTAACCCTCTTTTCAAGGACTTTCAAAATAACGATAAAAGTTCGt
gcgaaaaatatttcttacacTTTTAGGTGATGCCAAACAATTTTATCCCA
ACTTGCGTCAATGGCTTGACTATTCAGCCAAGACTAACGGACCAAAGATC
TACGTTGGTGTACCCAGTCATGAAGCAGCTGCGTTTGGTCGTGGTTATTG
GCGAACACCCGCAGAAATGGCAGCAATCTATAACGTGAGTAAAGTCAATG
CAAACAAATTTATAAAGTATATAAGAATTTATTTTGAGCAAAGACAACGA
ATAAAAATCCTCGAAAAATCAAAGGACTAGTTAGATAACAAATTTAACTA
ATGCAAGAAACATTAACATTTAAAGTTATTCTCTTACAATTTAAGAAAAT
TCGGAACGAGCCTCGTTTTGGTGGTTTCATGTTATGGGATGCATCATTTG
ATCAAAACAATGTCATTGGTGGATTAAGATACAGTCAACATCTTGATCGT
ATCCTTGGAGGTAACGGAGGTGGTGGCGGTCACTGGACCACCAAACGCCC
CCGCCCAACAAAGACAGTAAGACCAAGACCAGATACAACCAGACCAGATA
CAACCAGACCTCCTAAACCAGTAACTACCAAACGACCTGCACCAACAAAA
CCATGTAAGTGTCTGAAAAAGAAAGTTTGTGTTTTTCATTATAAATAGAT
CTTTagtcaaatcaaataaaatggaaATTCTAAATAAGTTTGAGTTCATC
GACCCAGTGAtgttcatattggaagtttatcgtggcttggatcacgagat
ttacgtttggctacatTCAAAGTAACTAAACCAAAGAAGTGGAGCCATGC
AGACTTTATTAGCTAACAATAAGTAAACCCGAACGTAGATCCAATCCAcg
ataaactttcaaaattatacAAATGGAAATAGATGTTTCGCAGACAGTGC
CAGTTATGATTTTAATGGAATTCCATTTTAGGTTTTAGCCTTGTAAAAGA
CAGGAAGTCTTTATTTTTAACTTGGACaggacaatatccatatctcgAAA
CACTGGTCACAAAGCGTCATTTTGTGTACTTGCAATAAAATTCTTGTTGT
AATTTATTTTACAGCAAAAGTTTCGTGCGCTGGTATGCCAGATGGTATAT
ATGCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTTATATCGAACAG
CTTTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAACGCTGCAAGAAA
GTATTGTGATTGGCCTGCTAATGTCACGTGTTAGTTTTTGATTATtacta
aaagaaaaaattaataaaattgttataaacattattttcttttacatCTA
TGACTTAAAGCTCTGAAGAGAAAGTAGTTCATTTTTATACACCCCGTTGT
CACAGACCAGCTGGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00050530TCONS_00050530Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00050530-proteinTCONS_00050530-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:437543..441257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16	0.08	0.09	0.11	0.03	0.08	0	0.09	0	0.38	0.21	0.05	24.34	25.79	17.76	43.17	9.22	10.36	218	205.46	65.34	80.01	100.4	102.75	44.89	57.57	0.07	0.08	0.06	0.03