TCONS_00050530 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050530
Unique Name	TCONS_00050530
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1576

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_179:437543..441257+
coding sequence from alignment at scaffold_179:437543..441257+

transcript sequence

>TCONS_00050530 ID=TCONS_00050530|Name=TCONS_00050530|organism=Clytia hemisphaerica|type=transcript|length=1576bp
TTCAAACATATCTCACAAAAGCTCACAGACTAATATCATAAAATATTATA
AAGCAAGATGAAGGGTTTCAAAAAGCATCATTAAAGACTTCTTAGGAAAA
GGACATACAAGGtatatcaaatcataacaaaaatGAAGAGCCTTATTTTA
TTTTGTGTGTTCGCTTTCGCGTCTCTTTCATACACAGAAGGGAAGAAGCA
CAAATTGGTAGCGTATTGGGGACAAAATGCCGTATACAATCTGAAGAAAG
AAAAGcaatactttgaaaaaatttatcGCATTTTTGTCGTCATAGTAact
atgacgtcatcgttttggCATTTATGCATGTTTTCTTTGATGCAAGACAA
AAAGATTCTATGCCTGGTATGAATTTCGCATTCCACTGTGAGACACCGTT
AAGCCAAGAATATCCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTA
TAAAGGAATGTCAAGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGA
GCCACAGGAGGATATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGC
TCAACGGGTGTGGGATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTC
GACCTTTCGGAAGTGCTGTTTTGGATGGTGTTGATTTGGACATTGAGGGT
GGTTCACACATTGGTTACACACAATTCACTCGAACATTACGTAGATGCAT
GGATGCTGATCACTCCAAGAAATACATCATTGCAGCAGCTCCTCAATGCC
CCTTCCCTGATCATTACCTAGGCCCAGCCCCCGGAAAAGCATTCACAGAC
GCGGCTACATGTTTCGATGAGATTTACATCCAGTTTTACAACAATTATTG
TCACACAGGTGATGCCAAACAATTTTATCCCAACTTGCGTCAATGGCTTG
ACTATTCAGCCAAGACTAACGGACCAAAGATCTACGTTGGTGTACCCAGT
CATGAAGCAGCTGCGTTTGGTCGTGGTTATTGGCGAACACCCGCAGAAAT
GGCAGCAATCTATAACAAAATTCGGAACGAGCCTCGTTTTGGTGGTTTCA
TGTTATGGGATGCATCATTTGATCAAAACAATGTCATTGGTGGATTAAGA
TACAGTCAACATCTTGATCGTATCCTTGGAGGTAACGGAGGTGGTGGCGG
TCACTGGACCACCAAACGCCCCCGCCCAACAAAGACAGTAAGACCAAGAC
CAGATACAACCAGACCAGATACAACCAGACCTCCTAAACCAGTAACTACC
AAACGACCTGCACCAACAAAACCATCAAAAGTTTCGTGCGCTGGTATGCC
AGATGGTATATATGCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTT
ATATCGAACAGCTTTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAAC
GCTGCAAGAAAGTATTGTGATTGGCCTGCTAATGTCACGTGTTAGTTTTT
GATTATtactaaaagaaaaaattaataaaattgttataaacattattttc
ttttacatCTATGACTTAAAGCTCTGAAGAGAAAGTAGTTCATTTTTATA
CACCCCGTTGTCACAGACCAGCTGGG

Run BLAST on NCBI

protein sequence of TCONS_00050530-protein

>TCONS_00050530-protein ID=TCONS_00050530-protein|Name=TCONS_00050530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MHVFFDARQKDSMPGMNFAFHCETPLSQEYPFLLRCPKIEAGIKECQARG
KQVLLSLGGATGGYGFKNDAEAKLFAQRVWDLVLGGDKLKKLRPFGSAVL
DGVDLDIEGGSHIGYTQFTRTLRRCMDADHSKKYIIAAAPQCPFPDHYLG
PAPGKAFTDAATCFDEIYIQFYNNYCHTGDAKQFYPNLRQWLDYSAKTNG
PKIYVGVPSHEAAAFGRGYWRTPAEMAAIYNKIRNEPRFGGFMLWDASFD
QNNVIGGLRYSQHLDRILGGNGGGGGHWTTKRPRPTKTVRPRPDTTRPDT
TRPPKPVTTKRPAPTKPSKVSCAGMPDGIYAHPKDCSKYFECYIEQLFLK
QCPPGLKFNAARKYCDWPANVTC

Run BLAST on NCBI

transcript from alignment at scaffold_179:437543..441257+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050530 ID=TCONS_00050530|Name=TCONS_00050530|organism=Clytia hemisphaerica|type=transcript|length=3715bp|location=Sequence derived from alignment at scaffold_179:437543..441257+ (Clytia hemisphaerica)
TTCAAACATATCTCACAAAAGCTCACAGACTAATATCATAAAATATTATA
AAGCAAGATGAAGGGTTTCAAAAAGCATCATTAAAGACTTCTTAGGAAAA
GGACATACAAGGtatatcaaatcataacaaaaatGAAGAGCCTTATTTTA
TTTTGTGTGTTCGCTTTCGCGTCTCTTTCATACACAGAAGGTAAGTTCCA
GTAAGCTTCTGAATTCAGCGCTCGTAAGTTTTTAATCTAAAacaggcacg
acgcaacgggtacaGCGGTCGCTGTACtagattttcataaaaaaagaaat
tttcctcttcgtcggtaaaatcgcttaaatttcctcattcgccgtaccag
atataaaaagcttccatCGTGCCTCTAAAAGGACATTATAGCCCCCAACA
CCAACATCACATTCATTGAGTTCTTACACCATTGTTAGGGACTGCAGTAG
AAGTCTGCGCTCCGGGATGTATTTTCCTCGGGTAGCGTTTTGATATAAGC
AGAGTATAATCAGTCACGGCGTGGGATTTAGAGTTGATAGGTGTATTAAC
CATGCTTttaatttaccattttcattTGATCTTAACAACAGGGAAGAAGC
ACAAATTGGTAGCGTATTGGGGACAAAATGCCGTATACAATCTGAAGAAA
GAAAAGcaatactttgaaaaaatttatcGCATTTTTGTCGTCATAGTAac
tatgacgtcatcgttttggCATTTATGCATGTTTTCTTTGATGCAAGACA
AAAAGGTAAGACTCGTATCTTTATAACGTAAAAATCTGCTTTGCAAAGGG
TCTTAAGCCATATTCACGGCAGTCGAAATGATTAAAGTAACAAAAACACG
ATTCATATTGAGagtaatttgaatttgaattctaCTGTAATTCAATGCAA
AAATATGAACGTCTTTATATGACCTTTATGATATTACTTTTAGATTCTAT
GCCTGGTATGAATTTCGCATTCCACTGTGAGACACCGTTAAGCCAAGAAT
ATCCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTATAAAGGAATGT
CAAGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGAGCCACAGGAGG
ATATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGCTCAACGGGTGT
GGGATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTCGACCTTTCGGA
AGGTAgtttaattgttttcttttgtgaCAGATATTCATTCATTTCATAAT
ATATAGTTAAACTCTTCCTCTTGAACGTATAgggttttctgaaaaaaaaa
tgtccTTATAAATTAGGTTTTGTGATGAATTTCTAATTTGgacacacgtt
tttttttaataaagacatccaaaatttttgaagcctattcgtaggatatt
cttaacttttggagtttaagcctaaaaatattcttaacatgttctttttt
CCACCACTTTAagagtatttttgcccatttccTTAataaatcaggtgttt
tagagtctgcaaagcatTAAAATATGTtcctaatattttggccatcgaag
ccttgttcttatatagttttttcttacaaaaaaggtGTATGTAAGGGTAT
ACCATTAGAACGTTAATTAAAGGTCCGCAACGCAGAGCTTAGATTTTGAT
GTGTTACATTTACCTTTCCAGTGCTGTTTTGGATGGTGTTGATTTGGACA
TTGAGGGTGGTTCACACATTGGTTACACACAATTCACTCGAACATTACGT
AGATGCATGGATGCTGATCACTCCAAGAAATACATCATTGCAGCAGCTCC
TCAATGCCCCTTCCCTGATCATTACCTAGGCCCAGCCCCCGGAAAAGCAT
TCACAGACGCGGCTACATGTTTCGATGAGATTTACATCCAGTTTTACAAC
AATTATTGTCACACAGGTAACATTTGATTAACAGAGCCTCGTTTTGGTCT
TTGATCGAGGTTGGTTTAAAGGCGTTTCCCATATAATTTCCGTGCTAATA
CATGTTTAAAATAAAACACTGAATCAAAATTcgatactttgaaaaaaatg
aaataaacagaCACACTTGtgttgaatacaccttttcgaccgtagtcgcg
cggtcaggcgcgtgccacttaattatttaattatcccccaaaactcgatc
caatccttttttgacacactTTTCTATTGtgtataggtgcgaaaaaagga
ctgggacggttttagtgggataaagcggacaaaaaattcccgcacggcaa
ttggcggctacggtcgtaAAGGTGTATTACATAATACTACTTGAATCTTA
CCTTGTTAACCCTCTTTTCAAGGACTTTCAAAATAACGATAAAAGTTCGt
gcgaaaaatatttcttacacTTTTAGGTGATGCCAAACAATTTTATCCCA
ACTTGCGTCAATGGCTTGACTATTCAGCCAAGACTAACGGACCAAAGATC
TACGTTGGTGTACCCAGTCATGAAGCAGCTGCGTTTGGTCGTGGTTATTG
GCGAACACCCGCAGAAATGGCAGCAATCTATAACGTGAGTAAAGTCAATG
CAAACAAATTTATAAAGTATATAAGAATTTATTTTGAGCAAAGACAACGA
ATAAAAATCCTCGAAAAATCAAAGGACTAGTTAGATAACAAATTTAACTA
ATGCAAGAAACATTAACATTTAAAGTTATTCTCTTACAATTTAAGAAAAT
TCGGAACGAGCCTCGTTTTGGTGGTTTCATGTTATGGGATGCATCATTTG
ATCAAAACAATGTCATTGGTGGATTAAGATACAGTCAACATCTTGATCGT
ATCCTTGGAGGTAACGGAGGTGGTGGCGGTCACTGGACCACCAAACGCCC
CCGCCCAACAAAGACAGTAAGACCAAGACCAGATACAACCAGACCAGATA
CAACCAGACCTCCTAAACCAGTAACTACCAAACGACCTGCACCAACAAAA
CCATGTAAGTGTCTGAAAAAGAAAGTTTGTGTTTTTCATTATAAATAGAT
CTTTagtcaaatcaaataaaatggaaATTCTAAATAAGTTTGAGTTCATC
GACCCAGTGAtgttcatattggaagtttatcgtggcttggatcacgagat
ttacgtttggctacatTCAAAGTAACTAAACCAAAGAAGTGGAGCCATGC
AGACTTTATTAGCTAACAATAAGTAAACCCGAACGTAGATCCAATCCAcg
ataaactttcaaaattatacAAATGGAAATAGATGTTTCGCAGACAGTGC
CAGTTATGATTTTAATGGAATTCCATTTTAGGTTTTAGCCTTGTAAAAGA
CAGGAAGTCTTTATTTTTAACTTGGACaggacaatatccatatctcgAAA
CACTGGTCACAAAGCGTCATTTTGTGTACTTGCAATAAAATTCTTGTTGT
AATTTATTTTACAGCAAAAGTTTCGTGCGCTGGTATGCCAGATGGTATAT
ATGCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTTATATCGAACAG
CTTTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAACGCTGCAAGAAA
GTATTGTGATTGGCCTGCTAATGTCACGTGTTAGTTTTTGATTATtacta
aaagaaaaaattaataaaattgttataaacattattttcttttacatCTA
TGACTTAAAGCTCTGAAGAGAAAGTAGTTCATTTTTATACACCCCGTTGT
CACAGACCAGCTGGG

Coding sequence (CDS) from alignment at scaffold_179:437543..441257+

>TCONS_00050530 ID=TCONS_00050530|Name=TCONS_00050530|organism=Clytia hemisphaerica|type=CDS|length=6732bp|location=Sequence derived from alignment at scaffold_179:437543..441257+ (Clytia hemisphaerica)
ATGCATGTTTTCTTTGATGCAAGACAAAAAGATTCTATGCCTGGTATGAA
TTTCGCATTCCACTGTGAGACACCGTTAAGCCAAGAATATCCATTTTTGC
TTCGATGTCCCAAAATTGAAGCAGGTATAAAGGAATGTCAAGCACGAGGT
AAACAAGTACTGCTCTCCCTTGGAGGAGCCACAGGAGGATATGGTTTTAA
AAACGATGCGGAGGCCAAGCTGTTTGCTCAACGGGTGTGGGATCTTGTGT
TGGGTGGTGATAAATTGAAGAAACTTCGACCTTTCGGAAGTGCTGTTTTG
GATGGTGTTGATTTGGACATTGAGGGTGGTTCACACATTGGTTACACACA
ATTCACTCGAACATTACGTAGATGCATGGATGCTGATCACTCCAAGAAAT
ACATCATTGCAGCAGCTCCTCAATGCCCCTTCCCTGATCATTACCTAGGC
CCAGCCCCCGGAAAAGCATTCACAGACGCGGCTACATGTTTCGATGAGAT
TTACATCCAGTTTTACAACAATTATTGTCACACAGGTGATGCCAAACAAT
TTTATCCCAACTTGCGTCAATGGCTTGACTATTCAGCCAAGACTAACGGA
CCAAAGATCTACGTTGGTGTACCCAGTCATGAAGCAGCTGCGTTTGGTCG
TGGTTATTGGCGAACACCCGCAGAAATGGCAGCAATCTATAACAAAATTC
GGAACGAGCCTCGTTTTGGTGGTTTCATGTTATGGGATGCATCATTTGAT
CAAAACAATGTCATTGGTGGATTAAGATACAGTCAACATCTTGATCGTAT
CCTTGGAGGTAACGGAGGTGGTGGCGGTCACTGGACCACCAAACGCCCCC
GCCCAACAAAGACAGTAAGACCAAGACCAGATACAACCAGACCAGATACA
ACCAGACCTCCTAAACCAGTAACTACCAAACGACCTGCACCAACAAAACC
ATCAAAAGTTTCGTGCGCTGGTATGCCAGATGGTATATATGCTCACCCGA
AAGATTGCTCCAAATATTTCGAATGTTATATCGAACAGCTTTTCTTGAAA
CAATGTCCACCTGGGTTGAAATTCAACGCTGCAAGAAAGTATTGTGATTG
GCCTGCTAATGTCACGTGTTAGATGCATGTTTTCTTTGATGCAAGACAAA
AAGATTCTATGCCTGGTATGAATTTCGCATTCCACTGTGAGACACCGTTA
AGCCAAGAATATCCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTAT
AAAGGAATGTCAAGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGAG
CCACAGGAGGATATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGCT
CAACGGGTGTGGGATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTCG
ACCTTTCGGAAGTGCTGTTTTGGATGGTGTTGATTTGGACATTGAGGGTG
GTTCACACATTGGTTACACACAATTCACTCGAACATTACGTAGATGCATG
GATGCTGATCACTCCAAGAAATACATCATTGCAGCAGCTCCTCAATGCCC
CTTCCCTGATCATTACCTAGGCCCAGCCCCCGGAAAAGCATTCACAGACG
CGGCTACATGTTTCGATGAGATTTACATCCAGTTTTACAACAATTATTGT
CACACAGGTGATGCCAAACAATTTTATCCCAACTTGCGTCAATGGCTTGA
CTATTCAGCCAAGACTAACGGACCAAAGATCTACGTTGGTGTACCCAGTC
ATGAAGCAGCTGCGTTTGGTCGTGGTTATTGGCGAACACCCGCAGAAATG
GCAGCAATCTATAACAAAATTCGGAACGAGCCTCGTTTTGGTGGTTTCAT
GTTATGGGATGCATCATTTGATCAAAACAATGTCATTGGTGGATTAAGAT
ACAGTCAACATCTTGATCGTATCCTTGGAGGTAACGGAGGTGGTGGCGGT
CACTGGACCACCAAACGCCCCCGCCCAACAAAGACAGTAAGACCAAGACC
AGATACAACCAGACCAGATACAACCAGACCTCCTAAACCAGTAACTACCA
AACGACCTGCACCAACAAAACCATCAAAAGTTTCGTGCGCTGGTATGCCA
GATGGTATATATGCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTTA
TATCGAACAGCTTTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAACG
CTGCAAGAAAGTATTGTGATTGGCCTGCTAATGTCACGTGTTAGATGCAT
GTTTTCTTTGATGCAAGACAAAAAGATTCTATGCCTGGTATGAATTTCGC
ATTCCACTGTGAGACACCGTTAAGCCAAGAATATCCATTTTTGCTTCGAT
GTCCCAAAATTGAAGCAGGTATAAAGGAATGTCAAGCACGAGGTAAACAA
GTACTGCTCTCCCTTGGAGGAGCCACAGGAGGATATGGTTTTAAAAACGA
TGCGGAGGCCAAGCTGTTTGCTCAACGGGTGTGGGATCTTGTGTTGGGTG
GTGATAAATTGAAGAAACTTCGACCTTTCGGAAGTGCTGTTTTGGATGGT
GTTGATTTGGACATTGAGGGTGGTTCACACATTGGTTACACACAATTCAC
TCGAACATTACGTAGATGCATGGATGCTGATCACTCCAAGAAATACATCA
TTGCAGCAGCTCCTCAATGCCCCTTCCCTGATCATTACCTAGGCCCAGCC
CCCGGAAAAGCATTCACAGACGCGGCTACATGTTTCGATGAGATTTACAT
CCAGTTTTACAACAATTATTGTCACACAGGTGATGCCAAACAATTTTATC
CCAACTTGCGTCAATGGCTTGACTATTCAGCCAAGACTAACGGACCAAAG
ATCTACGTTGGTGTACCCAGTCATGAAGCAGCTGCGTTTGGTCGTGGTTA
TTGGCGAACACCCGCAGAAATGGCAGCAATCTATAACAAAATTCGGAACG
AGCCTCGTTTTGGTGGTTTCATGTTATGGGATGCATCATTTGATCAAAAC
AATGTCATTGGTGGATTAAGATACAGTCAACATCTTGATCGTATCCTTGG
AGGTAACGGAGGTGGTGGCGGTCACTGGACCACCAAACGCCCCCGCCCAA
CAAAGACAGTAAGACCAAGACCAGATACAACCAGACCAGATACAACCAGA
CCTCCTAAACCAGTAACTACCAAACGACCTGCACCAACAAAACCATCAAA
AGTTTCGTGCGCTGGTATGCCAGATGGTATATATGCTCACCCGAAAGATT
GCTCCAAATATTTCGAATGTTATATCGAACAGCTTTTCTTGAAACAATGT
CCACCTGGGTTGAAATTCAACGCTGCAAGAAAGTATTGTGATTGGCCTGC
TAATGTCACGTGTTAGATGCATGTTTTCTTTGATGCAAGACAAAAAGATT
CTATGCCTGGTATGAATTTCGCATTCCACTGTGAGACACCGTTAAGCCAA
GAATATCCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTATAAAGGA
ATGTCAAGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGAGCCACAG
GAGGATATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGCTCAACGG
GTGTGGGATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTCGACCTTT
CGGAAGTGCTGTTTTGGATGGTGTTGATTTGGACATTGAGGGTGGTTCAC
ACATTGGTTACACACAATTCACTCGAACATTACGTAGATGCATGGATGCT
GATCACTCCAAGAAATACATCATTGCAGCAGCTCCTCAATGCCCCTTCCC
TGATCATTACCTAGGCCCAGCCCCCGGAAAAGCATTCACAGACGCGGCTA
CATGTTTCGATGAGATTTACATCCAGTTTTACAACAATTATTGTCACACA
GGTGATGCCAAACAATTTTATCCCAACTTGCGTCAATGGCTTGACTATTC
AGCCAAGACTAACGGACCAAAGATCTACGTTGGTGTACCCAGTCATGAAG
CAGCTGCGTTTGGTCGTGGTTATTGGCGAACACCCGCAGAAATGGCAGCA
ATCTATAACAAAATTCGGAACGAGCCTCGTTTTGGTGGTTTCATGTTATG
GGATGCATCATTTGATCAAAACAATGTCATTGGTGGATTAAGATACAGTC
AACATCTTGATCGTATCCTTGGAGGTAACGGAGGTGGTGGCGGTCACTGG
ACCACCAAACGCCCCCGCCCAACAAAGACAGTAAGACCAAGACCAGATAC
AACCAGACCAGATACAACCAGACCTCCTAAACCAGTAACTACCAAACGAC
CTGCACCAACAAAACCATCAAAAGTTTCGTGCGCTGGTATGCCAGATGGT
ATATATGCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTTATATCGA
ACAGCTTTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAACGCTGCAA
GAAAGTATTGTGATTGGCCTGCTAATGTCACGTGTTAGATGCATGTTTTC
TTTGATGCAAGACAAAAAGATTCTATGCCTGGTATGAATTTCGCATTCCA
CTGTGAGACACCGTTAAGCCAAGAATATCCATTTTTGCTTCGATGTCCCA
AAATTGAAGCAGGTATAAAGGAATGTCAAGCACGAGGTAAACAAGTACTG
CTCTCCCTTGGAGGAGCCACAGGAGGATATGGTTTTAAAAACGATGCGGA
GGCCAAGCTGTTTGCTCAACGGGTGTGGGATCTTGTGTTGGGTGGTGATA
AATTGAAGAAACTTCGACCTTTCGGAAGTGCTGTTTTGGATGGTGTTGAT
TTGGACATTGAGGGTGGTTCACACATTGGTTACACACAATTCACTCGAAC
ATTACGTAGATGCATGGATGCTGATCACTCCAAGAAATACATCATTGCAG
CAGCTCCTCAATGCCCCTTCCCTGATCATTACCTAGGCCCAGCCCCCGGA
AAAGCATTCACAGACGCGGCTACATGTTTCGATGAGATTTACATCCAGTT
TTACAACAATTATTGTCACACAGGTGATGCCAAACAATTTTATCCCAACT
TGCGTCAATGGCTTGACTATTCAGCCAAGACTAACGGACCAAAGATCTAC
GTTGGTGTACCCAGTCATGAAGCAGCTGCGTTTGGTCGTGGTTATTGGCG
AACACCCGCAGAAATGGCAGCAATCTATAACAAAATTCGGAACGAGCCTC
GTTTTGGTGGTTTCATGTTATGGGATGCATCATTTGATCAAAACAATGTC
ATTGGTGGATTAAGATACAGTCAACATCTTGATCGTATCCTTGGAGGTAA
CGGAGGTGGTGGCGGTCACTGGACCACCAAACGCCCCCGCCCAACAAAGA
CAGTAAGACCAAGACCAGATACAACCAGACCAGATACAACCAGACCTCCT
AAACCAGTAACTACCAAACGACCTGCACCAACAAAACCATCAAAAGTTTC
GTGCGCTGGTATGCCAGATGGTATATATGCTCACCCGAAAGATTGCTCCA
AATATTTCGAATGTTATATCGAACAGCTTTTCTTGAAACAATGTCCACCT
GGGTTGAAATTCAACGCTGCAAGAAAGTATTGTGATTGGCCTGCTAATGT
CACGTGTTAGATGCATGTTTTCTTTGATGCAAGACAAAAAGATTCTATGC
CTGGTATGAATTTCGCATTCCACTGTGAGACACCGTTAAGCCAAGAATAT
CCATTTTTGCTTCGATGTCCCAAAATTGAAGCAGGTATAAAGGAATGTCA
AGCACGAGGTAAACAAGTACTGCTCTCCCTTGGAGGAGCCACAGGAGGAT
ATGGTTTTAAAAACGATGCGGAGGCCAAGCTGTTTGCTCAACGGGTGTGG
GATCTTGTGTTGGGTGGTGATAAATTGAAGAAACTTCGACCTTTCGGAAG
TGCTGTTTTGGATGGTGTTGATTTGGACATTGAGGGTGGTTCACACATTG
GTTACACACAATTCACTCGAACATTACGTAGATGCATGGATGCTGATCAC
TCCAAGAAATACATCATTGCAGCAGCTCCTCAATGCCCCTTCCCTGATCA
TTACCTAGGCCCAGCCCCCGGAAAAGCATTCACAGACGCGGCTACATGTT
TCGATGAGATTTACATCCAGTTTTACAACAATTATTGTCACACAGGTGAT
GCCAAACAATTTTATCCCAACTTGCGTCAATGGCTTGACTATTCAGCCAA
GACTAACGGACCAAAGATCTACGTTGGTGTACCCAGTCATGAAGCAGCTG
CGTTTGGTCGTGGTTATTGGCGAACACCCGCAGAAATGGCAGCAATCTAT
AACAAAATTCGGAACGAGCCTCGTTTTGGTGGTTTCATGTTATGGGATGC
ATCATTTGATCAAAACAATGTCATTGGTGGATTAAGATACAGTCAACATC
TTGATCGTATCCTTGGAGGTAACGGAGGTGGTGGCGGTCACTGGACCACC
AAACGCCCCCGCCCAACAAAGACAGTAAGACCAAGACCAGATACAACCAG
ACCAGATACAACCAGACCTCCTAAACCAGTAACTACCAAACGACCTGCAC
CAACAAAACCATCAAAAGTTTCGTGCGCTGGTATGCCAGATGGTATATAT
GCTCACCCGAAAGATTGCTCCAAATATTTCGAATGTTATATCGAACAGCT
TTTCTTGAAACAATGTCCACCTGGGTTGAAATTCAACGCTGCAAGAAAGT
ATTGTGATTGGCCTGCTAATGTCACGTGTTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032000	XLOC_032000	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050530-protein	TCONS_00050530-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_179	supercontig	scaffold_179:437543..441257 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155718	0.0759248	0.0881559	0.114996	0.0349991	0.0829702	0	0.0937124	0	0.379255	0.210351	0.0518536	24.3373	25.7944	17.758	43.175	9.21537	10.364	218.005	205.464	65.3417	80.009	100.401	102.75	44.8898	57.5705	0.0711734	0.0759582	0.0576116	0.0293486

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002557	Chitin-bd_dom
IPR001223	Glyco_hydro18_cat
IPR001579	Glyco_hydro_18_chit_AS
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0006030	chitin metabolic process
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008061	chitin binding
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006030	chitin metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008061	chitin binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050530 vs. Swiss-Prot (Human)

BLAST of TCONS_00050530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050530 (transcript) - C. hemisphaerica