XLOC_031033 (gene) - C. hemisphaerica

Overview
NameXLOC_031033
Unique NameXLOC_031033
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_147:19691..29757+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031033 ID=XLOC_031033|Name=XLOC_031033|organism=Clytia hemisphaerica|type=gene|length=10067bp|location=Sequence derived from alignment at scaffold_147:19691..29757+ (Clytia hemisphaerica)
GTATAAACGTTTTATCATTTTCGTTAAAATCAATATTGCCTCTGCTTTTG
AACCAGATCTTTATCTAGCAGTATAATTATCTCTCTAACATAGTTGagga
gaaaaaacaaattcTGAGAAATTACGTTTATATTATCAACAAATAAGGGG
GAAATGACTACATTTTTGCATGATCAAACTTGTCAGAAGAAAAGAATTTG
ATCTAAATCTTGGCTATCATAAAGATCTACGTGTAAAAAGTAGTTTTTGT
GTGTATTAATGatgaaaccaaaacaaaattgaattgGAAAATTGTCGTCG
TGAAAAATTCTGTTTATCTTTGATATCAATGCAAGAAAAGCGTGTATAGa
acagaaaaatatatttcttagAAGAAAGTAAGCAAGGTTGTAGTTGGATT
TCATAGAAATAAGCAGGAATTGTCTTAACAACATGGTGCACTTGATTGTT
TACTTTATTCTACTCGTTGCAATTCAACATCAAATTATTTGTTTACGAGT
CAGCAAAATCACACGGAATCGTTTCCCAGCGGATGACTTTGAACTTACAC
CAGAGACAGGTGATACTTGTCCACCTGACGCATGCGCTAAGTATCACGGA
GAGATAAACACTATTGATCAGAAACAATGTAAATGTCTGTGTGATGGAAG
TTTGAAGACGTTCATTTTGTCACATGGTTGTATGGATAGTGTAGATGCAC
GTAAGATattcttctttcattttttgaatgtttctttCCATACATACCCT
GTCTCAGTGACAGAGCTTAGTAGTCTTATTgacgtttttcaaaaattaat
tcacTCAAATATACAAAATTCCACTTGGTTACAAAAATCAGTCCTCAACA
AATTTATTAAGAATTACAAGTACTGCGAAAATTTCTATGAAAATTTGGCT
AGTCTTTTTAATGCGGTTATTATGTTCATACGATGGTTCTTATTTTTTCC
GAATTCAGCCTAAATGTTGTTAACACTAAGAGATTAGGTACGTGTTATTC
CTAATTTTGTCTAACGACTGTAAAATGTATAGAGGTAATCAAATCACTTA
ATATTCTTGCTTATAACTTTGTTAAGACCTCTGTCTCAGTCTCAGTGATC
CGGTGGAAATCTTTCTACCAGTGGAGATGAAAACTTCTAACTGAAATAAC
AatgtggaaaaaagttttcgttTTCAGGTCAAAAATACCAGCGAGATGTT
TTACTTTTTCACATACCCacgtgtcacagacccagtggcACCCCATTACA
CTGGAAAATGGGAATAAAATTATATTGGGCGattcccagtggggctaaat
TCAGGATATTTTAGTCGAACTTTTCAGTGAGGCTGCGACACAGGGTTGAT
ATTTTAGTTCGGAAGGGATAAAGTACATTAATTGCTTATCAATCATCCTC
GTAAACTAGATATATGACATATATGTTATCTTTCAGTGTGCGGCAACTTT
CGATTGGGTCATTATCGTTTGGTGTGGGGTTTCAGTATTGAAGAACTTAT
CGAGAGACacaaacaaattttcttttgccCAACACCTGGAGACGAATGTA
GCCAAGACACCATTGTGAAATCATGTGAAATAATTCACGATAAATCATTC
TTTGATAATGGTGAACCCATTTTTGATGGCAGAACCATGgctgatttcaa
atttgaagcTTTTGAAAAGGATGGAAAAAACCTTTTGGCTTTAATGGTAA
GTTTTGGGCTGAATTTGGCTTGATCGTTGGTCTGTTCTATTGTCAGAAAA
ACGAGAAGGAGGAAATTTCTAAATACAACTACGGGAAACTAAGGAAAAGT
TTGGTTTTGAATTTTCTATAAAATTACAACATCcagaacaaaaaaattat
gaaaacatgTAACcaagtttttataaagaaatttgaTAGAACAAATCTCG
TTTGTTATACTGTAGCGCTTTTAGAAGAAGTTGTGTTCTAATTTGACTGT
AAACAGACCTGGTGAGAAGTttaaaaattcattgccgtacgTTACGTTAC
CTGAGATAGACTCTGGTACAAagtactttaagggcagaaagtttctgccc
ttaaagtatgtGCTATTCTTTCTTTTAAACCCATTTAAGAATTTTGACGT
CCTTGGTACTCATGTCTCACACGTGACATCGGAAGACTTTTaatattatt
gttattttaGGCATCTCAAGACATTATCGAGAACaattattttggaaaaa
tactCAATCTGATGTTGAGATGTACTTTGGATAATAATATTTACAAAATC
TCGGAATTAGAAGGAATATTNTTTTGATGGCAGAACCATGgctgatttca
aatttgaagcTTTTGAAAAGGATGGAAAAAACCTTTTGGCTTTAATGGTA
AGTTTTGGGCTGAATTTGGCTTGATCGTTGGTCTGTTCTATTGTCAGAAA
AACGAGAAGGAGGAAATTTCTAAATACAACTACGGGAAACTAAGGAAAAG
TTTGGTTTTGAATTTTCTATAAAATTACAACATCcagaacaaaaaaatta
tgaaaacatgTAACcaagtttttataaagaaatttgaTAGAACAAATCTC
GTTTGTTATACTGTAGCGCTTTTAGAAGAAGTTGTGTTCTAATTTGACTG
TAAACAGACCTGGTGAGAAGTttaaaaattcattgccgtacgTTACGTTA
CCTGAGATAGACTCTGGTACAAagtactttaagggcagaaagtttctgcc
cttaaagtatgtGCTATTCTTTCTTTTAAACCCATTTAAGGATTTTGACG
TCCTTGGTACTCATATCTCACACGTGACATCGGAAGACTTTTAATATCAT
TGTTATTTTAGGCATCTCAAGACATTATTGAGAACaattattttggaaaa
atactCAATCTGATGTTGAGATGTACTTTGGATAATAATATTTACAAAAT
CTCGGAATTAGAAGGAATATTGGTGGTAAAGATATCAGAAAGTATCATCG
GTAAGAAGTTCATTCTTTAATTTGTCAAAAGAGGTTACATATtggcaccc
ctgtctcacagcctcagtgaaactttttcctacagcagggataaaaattt
cgattgacATCTCAatggaaataaaaattatattgtcccaaggttaaaaa
atccagctgggatggttttggagtgcaatttctaaacaatgaatttcgaa
GGGGGATGAAATcgaagtcaatttctcagtggggctgaaattctagggta
tttttcccaccggggacgaaaactttactaaattttccagtggggcttgg
gctccagcgggtctgtgacacaggggtgtacgaGTGTAAAAACCAACCTT
ATATAAAACGTATACATACATATTTTGGTCGTTATCAATAAAGTagtgaa
aatttcattaatcACAAGATCATGAAGGACTAGCTTAGCGCCACTCACCG
CTTCAAAAATGAACGAGTCTACATCTAACCAATGAGCTTTATCAACCCTA
AAAACTGGCGAAATCTTTGATCAGAATTAAAAAATTCGACAaggttcatc
atttttttcaaaggtAAACAGCATGTATTGTAAAATGATTGACGTCGAGT
AGCGATATCATTAATCAAATCCTGCTGAAATGTACACCATTTCTATAATT
TTTATTCTAAATCTAGAAagattttttggttttgttggTATATTATTCAA
AAGATATCATACAGTAAACACATTTTGATTCCCTCCCATCATTTAGTACC
AAGATCAGAGAGTTCCAAGAATTTTCCTGAACCCACATGTCCACCGACAT
ATCAACCAAAGAACCCAAACGTTACATCATCATCAACAACAATCAAACCT
ACCAGAGCCTTGCATGCGTCAACAAGAATCATTGTGTCGTCTTCTGAAAA
CACCAACATAGATATCATAACATCCACAACACAGCCTGATAAGGTTTCAT
CAACTCCTAATCTCAAGACCACCACAATAAACGAAACCATAAATATCTTT
GAATCTTCCACAGTAGACATCAATACAACAGCAAAACAACTAATATCAAA
TAGTAGTGGAGTATCAAATAGTACTCTGATCATTTCAGCGGTAAGTCATA
TAGCTAGTTCAGCTAAGATAATCAAATTCGAGTGGAATTGGTTTGGAGTG
TTTCAATTGAACTTCAAGCTGGgataaatcaaagtcaatttccctgTGGG
GCTGAGcggatctgtgacacagggatgtcTCCATCAAACTTTAAATCTAT
ATAGAATCTGAAATCCTCATCAACATATTCCTACTCTTATTTTTAAATTC
GTTAGGCACATAGATACTAGAACAAAGATACTGCGACTAGAAGATAATCA
AAGGTGTACcctagtagggggaattttgttcgattttttggaatcgcttg
actgttttgttagNCGACCATTCTTAATCCAACCAACTCTCTCCCCTTTG
TTTTAGGAGCCGGTAGGAAAAGACACATCTACATCCAAAAAGCAAGCAAT
TTCCATCGGTATCGCAATCGGTGCTTCAATACTTATCGTCGTGATCATTA
TTGCTATCATGCTCTTCAGAAAGAAACATTGTGAGTTTTTtttcggaccc
ttacagtgcaaagaaaacttttgaccaatttcagacaaaatatggtcaga
ttttcgaaattttacacccttagaggtgcaatttttctcatctttgctga
tttcgacccttacaatGTTCACCTTGGGAACCTTGGAAAGTATACCCTTA
AGTGCCGCacgtatggtaggtcatttaccttgagtgccccccctgGGCAT
ATATCACGTGGGTATCACGTTGACACTGACAAATTTTGGTGATTCGCTGG
AACTAGGAACACAATCTAGAATATGTTGAAACTTCCCAAAAGTTCATTTC
CCTGGATTGTACTCCTTTTGTAAAATCGTCAGTCAGTATAAGacgtcatt
aaatttttttagacTAGTATTTTGAGACTAGTTTtgccaagcagcctcaa
tgtttcttaagaaatcgacctttcgagccttaaatgtttcttacatgttt
ctaaactttgtcgAGCCTaaaagacgcatgtcgataatacaatagactaa
tctacggtactttcctatcttctatattgattttctcaagtgtttctaac
tgttttgtaagtatttttctggaactttgccttgattggaaggttcttaa
aaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTACCCCGACCATTCTTAATCCAACCAACTCT
CTCCCCTTTGTTTTAGGAACCGGTAGGAAAAGACACATCTACATCCAAAA
AGCAAGCAATTTCCATCGGTATCGCAATCGGTGCTTCAATACTTATCGTC
GTGATCGTTATTGCTATCATGCTCTTCAGAAAGAAACATTGTGAGTTTTT
tttcggacccttacagtgcaaagaaaacttttgaccaatttcagacaaaa
tatggtcagattttcgaaattttacacccttagaggtgcaatttttctca
tctttgctgatttcgacccttacaatGTTCACCTTGGGAACCTTGGAAAG
TATACCCTTAAGTGCCGCacgtatggtaggtcatttaccttgagtgcccc
ctgGGCATATATCACGTGGGTATCACGTTGACACTGACAAATTTTGGTGA
TTCGCTGGAACTAGGAACACAATCTAGAATATGTTGAAACTTCCCAAGCT
CATTTCCCTGGATTGTACTCCTTTTGTAAAATCGTCAGTCAGTATAAgac
gtcattaattttttttagactAGTATTTTGAGACTAGTTTtgccaagcag
cctcaatgtttcttaagaaatcgaccttttgagccttaaatgtttcttac
atgtttctaaactttgtcgAGCCTaaaagacgcatgtcgataatacaata
gactaatctacggtactttcctgggggggtttcatggttggcggaggagc
ggaatcggcccttttttcggacggagtggcggaatttggcgaaaatttag
acggaattacggaaattgggttctctgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttcctatcttct
atattgattttctcaagtgtttctaactgttttgtaagtatttttctgga
gctttgccttgattggaaggttcttaaaaaaccaaattaaaaaatgttat
tttcttattctcatcctcagcatgtttcttagatgtttcttagtttttag
gcattctgagcctcatatttcttaaaagtgtgtttttcagaagaaaaaca
aaaaaaaaacgtgtaattttgatttttgatttaaattctAAATATTTCTA
TTTAGGTTGGCATAGGAAAAATAAAGATGGCACCGTTAAGTAAGTCCAAA
CAAATTTgctttgatttatttctgactCATTATTTCATCGACATCTTGAA
CGTTTAGCGGGATAAAATATGTCGTTCTAGGGCTTGTTTAAAACTAGCAA
GATTACTCTCGATAATTAATCAAGAAAATCATATTTTGTCTCGTGCTTTT
ATCTTAGATACGCCATGGAGGGTCGAGTCAACCAAAATGGTACTCAAAAT
AACAATATCACGACGCAAAACGGGCATGCTCCAAAAATAATCCTCCCTAG
AGGAAGTCTATTTGCAAATCAGGATCCCAAAATGGAGCCAGGAAACTCAA
TTATAAATAACCAAGGAAAAGTGTCACCTCGACCATCTATAAACGAAAGA
TTAGAACCAAGAGATGTAGGAACATTTCAAGAGTCATACATCAACGAACC
CGAGGGAGTAGCACCAAATGAACCCATCTATATGGATCCACCAGACCTTT
ATAACATGGTAAAAGAACTAGAGAACCAGTCTTCAGATACTGACCAAATC
CAAAAAACCAAGGAAACTCCTCCTCAATGTGACCAACAAGTGAGACCAGA
TGACtgcaaaaatcaaatgatagaCGAATCAACGACTTCACATCCCTACA
ATTGTATTGGTGAAGAAGAAACTCCAAAAAATCATGAATCACTTGCGCCA
GAAGATCCTAACGATTCACATCCTTACAATCGTCTTGATCTAGACATAAA
AAATACCAGGATAAATGATCGTCCAGAAATAAAACCTCCAAACGATTATA
ACGGGTTAATAAATCCTATCTATCATAAAGTGGACGACCCCAACACTATC
CCCTTATCCCCTGTGATTAATTATAGCGGAGATAACGAAGGTACCATTGG
TGGGATTGACAATGGTAATGGTGATAAACATTATGAGATCACTTTagctg
aaaatgaagaagatgatAAGAATGCTATTGGTAATATCAGTACGAATGAA
AATGATGCAGATAACAAACACTACGAGATCAGTTTAGATGAAAATGAGGG
AGATAATGACGACAATGAGGATCATAATAATGGAGCTAACAAACATTACG
AAATCTCTTTAGCTGGAATTGATGGAGATAATGAAAACTTTGAATATGAC
AGCATTGACGAGGATGATGATGTTGGTAACAAAAATAACGAATTGAATAA
TGCAgacaaaattggaaaaatatccCCAGTACATGAGTTTTCATCTGACG
AGGGCAGCAAGACATTGCTTGGTtcaatggaaagaaaaaaagaagagctT
TACGTCGACCTCGAGGACCCAGAAGATGATGATTTGTATGAAGTTTCTCC
CAAAGATGTCGAATAAAACTTAATAGAATCGATTATTTAAATAGCGGACA
AAATAGGTGGATGGGCAAAATAGCTGGATGCGTGACAACGTTGTTCAGAC
ATTCATCAAACGTTATATTGATGTCTATGAATGTTGATACCATCGATCTA
GTATGAATTGAATGCAGGTGTTTTATACGGGTAGGGTAACTAAGGCTAGT
TGTCGTGTAATGAaacaattttgagtttttgtatCTACCCTttgatgggg
ggggggttgtacttttacggtgtgatgggattggcccttttttagtacgg
tattacgggatttgacgaaaaaaaagacgggaaaacggtattttaaaatc
agacagtgacggtatttggccttattttttgtcattatgccggtatttga
acctgtacaaaccggtgtgacggtgttgttatttttttcaattttcggga
ttccgggattcagcaaaaaatttgacggcaaaacggtatttcgaacccct
acaaacccccccccctttgatGGAAAACATTTGgagttttgatttttgca
aTCAAGGATGGATGACTAAGGCTAGCTGTCGTGTAATGAAACAATTGCGA
GTATTTTGAAAGGGCAAATGAGTGATAGAAAAAATTTGGGATTTTGATTT
ATATAAATGTTAATTTACTGTCGTCCTCAGGCAGTTAAGATTTAACCATC
AATGGATATagcatacataaactcgctataaTAGCTGGAGGACGTGACTT
TCAATATCACGCAATTAATAGAATTACTAATATATTTCTTCGATGTGATT
TTGAGTTTGAGATTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048814TCONS_00048814Clytia hemisphaericatranscript
TCONS_00048815TCONS_00048815Clytia hemisphaericatranscript
TCONS_00048816TCONS_00048816Clytia hemisphaericatranscript
TCONS_00048817TCONS_00048817Clytia hemisphaericatranscript
TCONS_00048818TCONS_00048818Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048817-proteinTCONS_00048817-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:19691..29757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12	0.11	0.16	0.31	1.6	1.76	1.15	1.15	0.85	3.11	0.87	0.39	6.75	5.68	3.09	3.18	0.96	0.82	10.98	9.23	0.85	1.18	2.02	2.46	4.16	3.37	3.74	3.67	1.47	1.31