TCONS_00048818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048818
Unique NameTCONS_00048818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048818 ID=TCONS_00048818|Name=TCONS_00048818|organism=Clytia hemisphaerica|type=transcript|length=1737bp
GGTAGGAAAAGACACATCTACATCCAAAAAGCAAGCAATTTCCATCGGTA
TCGCAATCGGTGCTTCAATACTTATCGTCGTGATCGTTATTGCTATCATG
CTCTTCAGAAAGAAACATTGTTGGCATAGGAAAAATAAAGATGGCACCGT
TAAATACGCCATGGAGGGTCGAGTCAACCAAAATGGTACTCAAAATAACA
ATATCACGACGCAAAACGGGCATGCTCCAAAAATAATCCTCCCTAGAGGA
AGTCTATTTGCAAATCAGGATCCCAAAATGGAGCCAGGAAACTCAATTAT
AAATAACCAAGGAAAAGTGTCACCTCGACCATCTATAAACGAAAGATTAG
AACCAAGAGATGTAGGAACATTTCAAGAGTCATACATCAACGAACCCGAG
GGAGTAGCACCAAATGAACCCATCTATATGGATCCACCAGACCTTTATAA
CATGGTAAAAGAACTAGAGAACCAGTCTTCAGATACTGACCAAATCCAAA
AAACCAAGGAAACTCCTCCTCAATGTGACCAACAAGTGAGACCAGATGAC
tgcaaaaatcaaatgatagaCGAATCAACGACTTCACATCCCTACAATTG
TATTGGTGAAGAAGAAACTCCAAAAAATCATGAATCACTTGCGCCAGAAG
ATCCTAACGATTCACATCCTTACAATCGTCTTGATCTAGACATAAAAAAT
ACCAGGATAAATGATCGTCCAGAAATAAAACCTCCAAACGATTATAACGG
GTTAATAAATCCTATCTATCATAAAGTGGACGACCCCAACACTATCCCCT
TATCCCCTGTGATTAATTATAGCGGAGATAACGAAGGTACCATTGGTGGG
ATTGACAATGGTAATGGTGATAAACATTATGAGATCACTTTagctgaaaa
tgaagaagatgatAAGAATGCTATTGGTAATATCAGTACGAATGAAAATG
ATGCAGATAACAAACACTACGAGATCAGTTTAGATGAAAATGAGGGAGAT
AATGACGACAATGAGGATCATAATAATGGAGCTAACAAACATTACGAAAT
CTCTTTAGCTGGAATTGATGGAGATAATGAAAACTTTGAATATGACAGCA
TTGACGAGGATGATGATGTTGGTAACAAAAATAACGAATTGAATAATGCA
gacaaaattggaaaaatatccCCAGTACATGAGTTTTCATCTGACGAGGG
CAGCAAGACATTGCTTGGTtcaatggaaagaaaaaaagaagagctTTACG
TCGACCTCGAGGACCCAGAAGATGATGATTTGTATGAAGTTTCTCCCAAA
GATGTCGAATAAAACTTAATAGAATCGATTATTTAAATAGCGGACAAAAT
AGGTGGATGGGCAAAATAGCTGGATGCGTGACAACGTTGTTCAGACATTC
ATCAAACGTTATATTGATGTCTATGAATGTTGATACCATCGATCTAGTAT
GAATTGAATGCAGGTGTTTTATACGGGTAGGGTAACTAAGGCTAGCTGTC
GTGTAATGAAACAATTGCGAGTATTTTGAAAGGGCAAATGAGTGATAGAA
AAAATTTGGGATTTTGATTTATATAAATGTTAATTTACTGTCGTCCTCAG
GCAGTTAAGATTTAACCATCAATGGATATagcatacataaactcgctata
aTAGCTGGAGGACGTGACTTTCAATATCACGCAATTAATAGAATTACTAA
TATATTTCTTCGATGTGATTTTGAGTTTGAGATTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_147:25012..29757+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048818 ID=TCONS_00048818|Name=TCONS_00048818|organism=Clytia hemisphaerica|type=transcript|length=4746bp|location=Sequence derived from alignment at scaffold_147:25012..29757+ (Clytia hemisphaerica)
GGTAGGAAAAGACACATCTACATCCAAAAAGCAAGCAATTTCCATCGGTA
TCGCAATCGGTGCTTCAATACTTATCGTCGTGATCGTTATTGCTATCATG
CTCTTCAGAAAGAAACATTGTGAGTTTTTtttcggacccttacagtgcaa
agaaaacttttgaccaatttcagacaaaatatggtcagattttcgaaatt
ttacacccttagaggtgcaatttttctcatctttgctgatttcgaccctt
acaatGTTCACCTTGGGAACCTTGGAAAGTATACCCTTAAGTGCCGCacg
tatggtaggtcatttaccttgagtgccccctgGGCATATATCACGTGGGT
ATCACGTTGACACTGACAAATTTTGGTGATTCGCTGGAACTAGGAACACA
ATCTAGAATATGTTGAAACTTCCCAAGCTCATTTCCCTGGATTGTACTCC
TTTTGTAAAATCGTCAGTCAGTATAAgacgtcattaattttttttagact
AGTATTTTGAGACTAGTTTtgccaagcagcctcaatgtttcttaagaaat
cgaccttttgagccttaaatgtttcttacatgtttctaaactttgtcgAG
CCTaaaagacgcatgtcgataatacaatagactaatctacggtactttcc
tgggggggtttcatggttggcggaggagcggaatcggcccttttttcgga
cggagtggcggaatttggcgaaaatttagacggaattacggaaattgggt
tctctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNctttcctatcttctatattgattttctcaagtgtt
tctaactgttttgtaagtatttttctggagctttgccttgattggaaggt
tcttaaaaaaccaaattaaaaaatgttattttcttattctcatcctcagc
atgtttcttagatgtttcttagtttttaggcattctgagcctcatatttc
ttaaaagtgtgtttttcagaagaaaaacaaaaaaaaaacgtgtaattttg
atttttgatttaaattctAAATATTTCTATTTAGGTTGGCATAGGAAAAA
TAAAGATGGCACCGTTAAGTAAGTCCAAACAAATTTgctttgatttattt
ctgactCATTATTTCATCGACATCTTGAACGTTTAGCGGGATAAAATATG
TCGTTCTAGGGCTTGTTTAAAACTAGCAAGATTACTCTCGATAATTAATC
AAGAAAATCATATTTTGTCTCGTGCTTTTATCTTAGATACGCCATGGAGG
GTCGAGTCAACCAAAATGGTACTCAAAATAACAATATCACGACGCAAAAC
GGGCATGCTCCAAAAATAATCCTCCCTAGAGGAAGTCTATTTGCAAATCA
GGATCCCAAAATGGAGCCAGGAAACTCAATTATAAATAACCAAGGAAAAG
TGTCACCTCGACCATCTATAAACGAAAGATTAGAACCAAGAGATGTAGGA
ACATTTCAAGAGTCATACATCAACGAACCCGAGGGAGTAGCACCAAATGA
ACCCATCTATATGGATCCACCAGACCTTTATAACATGGTAAAAGAACTAG
AGAACCAGTCTTCAGATACTGACCAAATCCAAAAAACCAAGGAAACTCCT
CCTCAATGTGACCAACAAGTGAGACCAGATGACtgcaaaaatcaaatgat
agaCGAATCAACGACTTCACATCCCTACAATTGTATTGGTGAAGAAGAAA
CTCCAAAAAATCATGAATCACTTGCGCCAGAAGATCCTAACGATTCACAT
CCTTACAATCGTCTTGATCTAGACATAAAAAATACCAGGATAAATGATCG
TCCAGAAATAAAACCTCCAAACGATTATAACGGGTTAATAAATCCTATCT
ATCATAAAGTGGACGACCCCAACACTATCCCCTTATCCCCTGTGATTAAT
TATAGCGGAGATAACGAAGGTACCATTGGTGGGATTGACAATGGTAATGG
TGATAAACATTATGAGATCACTTTagctgaaaatgaagaagatgatAAGA
ATGCTATTGGTAATATCAGTACGAATGAAAATGATGCAGATAACAAACAC
TACGAGATCAGTTTAGATGAAAATGAGGGAGATAATGACGACAATGAGGA
TCATAATAATGGAGCTAACAAACATTACGAAATCTCTTTAGCTGGAATTG
ATGGAGATAATGAAAACTTTGAATATGACAGCATTGACGAGGATGATGAT
GTTGGTAACAAAAATAACGAATTGAATAATGCAgacaaaattggaaaaat
atccCCAGTACATGAGTTTTCATCTGACGAGGGCAGCAAGACATTGCTTG
GTtcaatggaaagaaaaaaagaagagctTTACGTCGACCTCGAGGACCCA
GAAGATGATGATTTGTATGAAGTTTCTCCCAAAGATGTCGAATAAAACTT
AATAGAATCGATTATTTAAATAGCGGACAAAATAGGTGGATGGGCAAAAT
AGCTGGATGCGTGACAACGTTGTTCAGACATTCATCAAACGTTATATTGA
TGTCTATGAATGTTGATACCATCGATCTAGTATGAATTGAATGCAGGTGT
TTTATACGGGTAGGGTAACTAAGGCTAGTTGTCGTGTAATGAaacaattt
tgagtttttgtatCTACCCTttgatggggggggggttgtacttttacggt
gtgatgggattggcccttttttagtacggtattacgggatttgacgaaaa
aaaagacgggaaaacggtattttaaaatcagacagtgacggtatttggcc
ttattttttgtcattatgccggtatttgaacctgtacaaaccggtgtgac
ggtgttgttatttttttcaattttcgggattccgggattcagcaaaaaat
ttgacggcaaaacggtatttcgaacccctacaaacccccccccctttgat
GGAAAACATTTGgagttttgatttttgcaaTCAAGGATGGATGACTAAGG
CTAGCTGTCGTGTAATGAAACAATTGCGAGTATTTTGAAAGGGCAAATGA
GTGATAGAAAAAATTTGGGATTTTGATTTATATAAATGTTAATTTACTGT
CGTCCTCAGGCAGTTAAGATTTAACCATCAATGGATATagcatacataaa
ctcgctataaTAGCTGGAGGACGTGACTTTCAATATCACGCAATTAATAG
AATTACTAATATATTTCTTCGATGTGATTTTGAGTTTGAGATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031033XLOC_031033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048818-exon-scaffold_147-1491911889:25012..25130TCONS_00048818-exon-scaffold_147-1491911889:25012..25130Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1510915933:25012..25130TCONS_00048818-exon-scaffold_147-1510915933:25012..25130Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1575043694:25012..25130TCONS_00048818-exon-scaffold_147-1575043694:25012..25130Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1491911889:27596..27629TCONS_00048818-exon-scaffold_147-1491911889:27596..27629Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1510915933:27596..27629TCONS_00048818-exon-scaffold_147-1510915933:27596..27629Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1575043694:27596..27629TCONS_00048818-exon-scaffold_147-1575043694:27596..27629Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1491911889:27798..29134TCONS_00048818-exon-scaffold_147-1491911889:27798..29134Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1510915933:27798..29134TCONS_00048818-exon-scaffold_147-1510915933:27798..29134Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1575043694:27798..29134TCONS_00048818-exon-scaffold_147-1575043694:27798..29134Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1491911889:29511..29757TCONS_00048818-exon-scaffold_147-1491911889:29511..29757Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1510915933:29511..29757TCONS_00048818-exon-scaffold_147-1510915933:29511..29757Clytia hemisphaericaexon
TCONS_00048818-exon-scaffold_147-1575043694:29511..29757TCONS_00048818-exon-scaffold_147-1575043694:29511..29757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:25012..29757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.548835	1.03025	0	0.151972	0.34056	1.10457	0.553375	0.058424	2.93585	1.36182	1.67688	1.45966	0.470367	0.416382	3.85252	3.16415	0	0.0702026	0.574669	0.640287	1.65008	1.35936	0.964892	1.34489	0.685918	0.370865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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