XLOC_030406 (gene) - C. hemisphaerica

Overview
NameXLOC_030406
Unique NameXLOC_030406
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_136:125964..133071+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030406 ID=XLOC_030406|Name=XLOC_030406|organism=Clytia hemisphaerica|type=gene|length=7108bp|location=Sequence derived from alignment at scaffold_136:125964..133071+ (Clytia hemisphaerica)
aatgatatgatacagccatgcataatttttaaaatatgcatgatacagta attatgcatggctgtatcattgtttttatgctagagtacataattattca acacggctgcttcttaaaaaaaaggtctatcaaaTCATAATAGAATCAgg cttttccaggaagaaaTAAGTAGGAGAGCGAGGAATCACTCACGTAACAA AGGCGgcaatctaaaatatgttccgttcgcgtcgcccgaccgactcacct tcaaaacataaacCCCGAGTCGGACAAGGCTGAAAAtgtcggaaaaagtt tttgatagctaagcacttctttgaatcatcattcgctacgagtttttgtt tacttaacccacattgagtcctgattgagttttttcatgtacccttattg aaattttcaagtcgaaAAATTCGGCAACGCGGCCGAAAGTAAGGTCCGCT TTTAAGGTTCACATGCGCGCGCATATTTAATATGGCAAATCCAAGATGGT GGCaagagattttgttgattgccgacttgattcttCGGTAtttactagat ttaaaaaaacagATAGAATTTACTACCAACCGACcaaccgactggatttg aagatgttttatgaCGCAAACAGAACATAGTTTAGATTGTCGCCAAAGAC AACGCGTGCAAAGCATGCAAAGCTTTTACGGAATCGCGCATGTGAACcaa ttttagcatttttctaTAGAATCAAAGTATAATTGACGCGCACAATTTTT CGCTCACCATACGAGATTGAGGAACGTTTTACTATCGCGCACGCCTTATT GAAAAGCAtgcgaatattacccaggaactTAGCTCTGgcagatcattttg atggaagttgttggaatgtttacaaggtttgtcaatgatgacagtgccat tgttaattttgttagatctaacAGATTGATGTTTGTAATACACCTCAACC AAAATTCAACCTCCTCGCGTTGTTGCTACGCAACACTTTTTGGAAGGTAA ATAAAGCGTGATATTGCGGTTTTCAGGCGAAAAGCCTTacaaaacatcca aaatattgatgccaaagagcctccaaatcaactgaagaaccaccgaagtt gttgtttttctctttcttatagcttctgctagcatcttgaaagctttgtt tagtttgtttttttcaaattcactgAAATGAAGTGTATTTTTAGGAAGAT ATAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGAGAacca tttatgtttacctcccaatttcaacggatccattttagcgcaattgtttt tgtggaatttccgatgagGTGTATTGCACTTTTGCAGTTTTGATTCACAT TAAAGAATTACCTATATTCTAGTTTTCATGTTGTTAGATATGCTGTTTTA GAGTTTTGGAGAGAGagagataaaaactgcaattatttttttttaaattg acataTTTCGCGCGCGGACACGCATGTGCTGAAAAccgcaatttttttaa caatgaaatgctgaatcaacagaaaagtaaagaaagtaaatcaatgaaaa ttgccattttcggcaattattgccctttttggaaagaaaagttgatttta ttattgaacatgTGGTATTTGACACCATCGCAATTAGTAGGGCCACTGTG CCTTGTTTAGTTTTGTCTTCAACTGGTTTTGTTGGAAATGTAGACTAGAA AAAAAGTCAAGTCAAATGCAAACAAACTTACAATCTGTTACAATGggagt tttgtttttttccttctggctgtgtttcggcatcgatgcaggatcttttt acatataattttagaacttttcatgttattgagcaacgaaggattgaaaa agtcacttttaaaaatccaaaaaaccttttctttgatgggattttacaat tttcaaacacctctgtcATTTTGACCTTAAGGACAActtattttgctgtt tttagCAATAAttgctgtttttattttattaataccCAATTGAATGTGAT CAGGTCAAGCCTGAAAATATCtggattttcattatttttttacagtTTTA GACGATCATCTGTAGAAAAGTGTTGTCTAACTGCCTTTTTATTAGGCTGT TAGGTTTCTAGGTGGGTAGGGCGTTAAAGGAAGGAACATCTCTGATATTT GGAACAATATAAAGGGTCTATAATACAACGACCCACAGTATGGCTCAAGA TTTTTCGGGCCACTTGGTTatttttaacttgaaaaagtCCCAAACATTAC CTGAACTGGCCCTTGCATGTTTGAGGGCGTGTTTGGGCCAGGTTTTTGGa ggcaaaaatacaaaatagtttAGCTAAAAGAATacctattttgatttttt tggtccAAACATGACCCATAAATGTTTATACAGGTCATACAGTGGGTAAg tatattaaaaaatttgggcaaatgcaaagcaaaaaaagatgaaaatgatg taACTTTTGACCTAAATAGTTTATAAAattgaccaatcaaatttgAAGAT AGCATTCAACTAGAACATTCTTTACCTTTCACACAAGAGTTAATTTCCAC ATCAATGTGAAAATATATTCACATGAGGTAATTTTAGTTATTAACTTTTA TGACTTTTTAATATCTTTCAGTGATCAGTAAGATAGTTATAAAATAAGTG AAAGATAAAATCAACATGTTTGGTGGTGGAAATAATTTGGAGAGTAtcct tttcaacaaattttactAAATCACATGCAAAATACATGTCAACACAATTC CATTAGCTTAAGAACAGTGATCCCTTTATATTTCAAGATAAATTATGTTG AAAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTTTcatat tattcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACT TGAAGGTAAGtctcaaaaactttttacagTATTAAATGTTATCTATTATA GTAAATTGTCATTGAAAATATGCATAAGCCATCAGGAATGAAGCTGTTGA ATGAGCTGTAACTTTAAATTAAAGATTGTTCAAATAtattgctttgtttt tgtagtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaa gaagaaaaggcagaaaaattaaaattgaaaaaggtaACAATGATGTGCTG TGATGTGATGAAACTATTTATTCGTACTCTCTCTATATATATGATGTAGA TATCAACTCCCTTTTATAGCAGAACTTCCAAAATAAAGTTGTAGCTATAC CCTCAGCTTAGTATGAAAAAGTAATTATGTTACTTGAAATTATTTATAAA ATGATATCCTAATTTTAGGCCATTCAAAAAGGAAATGTAGATGGAGCAAG GATATATGCTGAAAATGCAATCAGACAAAAGAATCAAGTAAATACACATT ATTACACTGTTTTGTATATCGTTTGAAAATATTGTTTATTGATTGGAAAT AATTAGCTATCAATAATTAAGCTTTTTAAATGCTTCTTAAAGGCTTTTGA AACCAATCAAGTTACACCAAGATTTTACAGTGGATATGCTTCCTACTGAT TTATTTCTTTACCGTTTTCAGGCACTACACTTTTTGAAATTATCTTCAAG AGTAGATGCAGTATCACAAAGAGTACAAACAGCCGTCACAATGAAACAGG TACTTGTTGTTGCTTATATGGGATGCATGTGATTGGATATAGAAATTGGA TTTATTGTATACTGTAAAccaggggggtcggtactaagttGTGGGGGCCA GTGCCGGGTAGTGGTCTgataaggtaagtaaaaaacaacttagtacatgg tactaagtggtggtccTAATTGAAAAAGACATTTTTACAACTGTGTCAAG GGACTAGATGGTGGTCTCAATACCAAATATGAGGCATCAAGTTAGTATCT GGTACTCAAAATCCTGCAAAAgcataaaaaatgttcttttactTTCTCTT GACTTAaccaatttttaagaaaatgcaagaaaatgcaagaaaatGAGTTG AATAGaaagtttttaaagtttttttgctgttttcacAGCATGCAATTAGT GGTCACCATTTGTttgatttaatttgtttttattattttaggtaaattct aattatataagtgaataatttttttccagcaaatttattttttgatgtcG GTCAATTGTTGAATCTGTTTATTTCAGTAATTTTCATTTGGCTATAATTC GGTTTGCACTGATAGCTAGAGTAGCGTGTAACCCTTTGAATAACtgagga gaaaaaaaaacagttatTTATCAACTTAGCTTGATTAAAGTTTATGTTGA TGATGTTTCAAATTAAAGATTAATTAATTAGTTAAATAGagctaaatttg tttttatttgaaactttacttcttttgattaaaaaagaattagcttgaaa atgataatttgGCTTGACCTAACTTGACAGGAATTTTTTCTGAGATATTG AGGGTTGTACAGAGTGGTGTGGTACAGAGTGGtgttataaagtttttttc gaaaatttaaaggaggtGTACCAGAAAGTACCATTACGAAGAAAAAaggg tggtatacctattttgaGGGAGAAAATCAACTCAGTAGAGGGTACTTAAG GGTGGTGTGTCATTTCTCAATGTTGATATCAAGATTGTACCCAGTTGTAC CGGGTACTTAGGTGTGGTAGATctattttaaggggtaaattcaacttagt accagggtactaagtggtggtggtctcagataaatttcaaaaaacaaaaa aagtacaaCTTTTCAGCACTGGTCCAGTACCACATTTTGGTACCCCCCCC ATGTGTAAACAATTTTCTTGATAATATGTATCGTTGATTTCTAGTACAGT CTCTACAACAAGAtgatatttttcacaaaaacaaCACCTATAAACATACT AANACAGTTTCTTCAAGATgatattttctataaaaacaacaCCTATAAGG ATACAGTGGCTAAGCTTAAAATGATATAATGCATAATATAtgttatatat atttatttttttgtcagGTCACAGGCTCAATGTCCAGCGTAGTAAAATCA ATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGGTAAGCAAAATGAT ATTATTTTCTCAGGTGttttaaaaagtataaaagTTTGATTTAACATTCC TAGAAATATGTATGTGCCATCAATCTAAACCCTTTGCTGTTCAAAAgagt tgaaaaatgtcaatttaatTATGCTCTTTTATTTTACTTTGCGCGTtcca tttcaaaaatttataacaaTAAATTCAGATGTTCCTTCTGTTGTCTCTAT TGAGAGGAACAACAATTTTCATGCGAAAGTTGTACGTTCACAAGGATGAT ATCATGATATCATGATCATGTTTTGCAGGTGTCAGCTATGATGGATAAAT TTGAGAAGCAATTCGAACAATTGGACGTTCAAACACAAGTCATGGATGAA ACAATGAGTGCTTCAACGACCCTTACTGTTCCACAGGTTACTATCATAAt tatgaatatcaagaatatgATGTTAATTATTCCCTTAATATTTGCTCTTG ATATGGGTCTAAAATTGTGTTAGTTGTAAAAGAAATTCGTTGTCAGCATt ctgtttaaaattaaaaaagtggAAATGAATGGCTGAATCgagggaaaaat agaaaatgaacaTTCAcgcttttctaaattttacactTCATCATTTTTAG AATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACGGGTAAGT TGCAAGAAATAAGATCTTAAAGTCACCGCTACATAAACCTTCAAGTGATT ATTCTAGTATATGATAATGTGTAAGATTTGTTCACTGAGGAATTAAAAAA CGTTAATGCTTGATTGTCTTCAAAACGCCATATTGTATCTTACAGTATCA AATCCGTCCAGCTGAGAGACAAATACATCACCATGATCACTAATCCTAAG GTTTCCGTCCATACATGCTTTTTATAGGCAAGTGTCggcccttggtcagg ctcgagtaTGCTTAAGCTTCCAAAGCATTCAGGCATAgcatatgcttatt atatgcttatgaactattatgcttttgattcacccaacccaattttttat aaaacttcAGAAATTATGTTAACATTCGATTCAAAAAGCATTTAGATTTT TGGAGCAGTAAAATGTGGCTATTCGTGGAATGTCTGTTTTTACTTGATCA TTTCCAAACCTTTTTGAACAGAAAAAGATTGACCTCatgaaatatttcag gctggcgTATATCCTTTTGCCATgttaggaaatctgcaaatctgagcctt cagaTGCTCATAAgctttatgcttataaaaaaacatgtattcacAAAAcc ttgttttattttaacacaGATCTGAAAAAAAGTCTATgagttattttgtt tttgttaaccTTTATGTATCAATTATTGCACCTACAGCCTTGAAGTGAAT ATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGAGCTGCAAGCGCATC AACCAGTGCCTCACAAGAACAGGTAACATTAATAGCATGTACCTCCTTCT ATCTTATCGTCTCAACAtgcgcgcgctgcaatcgcaccttttggcttcaa tcctaaaaaaagattacgtcataaaaatgtagcgcacgctcaaaaaaagt tgaacaaccgctacgtcagatcgcgccaatggagcttcttcatttttctt ttgaccaatagtttggaagctttgcttgaaaaagtgcgatcgaagcgcgc gcaagtggagatcGGCCTTTATAACAAAGATCAAGAACATTCGTTGCATA ATTTTGCCTCTTCGTTGAAGTGAAATGCAAGTTTGAAGACTCAGTATGAg ccaacttttgttttttttgctcggATAGCTAGAAATAGGTACGAACCAAC CTCGAGGTTACAATAGAGATAGGCTGTGAAATCTATATAATATTATCCTT TTATGAAATAAAGGAACTTGCTTTCTATGTTATATTGCTACAAGttcttc ttcaaaataaagataGATGTATAAATATTATTTACTTCTTCGCTTTTTAG GACGATTTATCACTTCGATTGGCCAAGCTTCGGCAGTAAATTCTTGGCTC CTCTACNN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047752TCONS_00047752Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047752-proteinTCONS_00047752-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:125964..133071 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CHMP1Bcharged multivesicular body protein 1b Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5 33.49 25.24 23.18 14.72 11.67 17.85 20.43 20.69 19.39 23.36 17.1 25.33 20.23 16.81 18.1 14.4 16.91 22.63 30.1 23.49 21.55 23.23 24.09 31.42 34.14 29.9 24.69 23.59 22.24