TCONS_00047752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047752
Unique NameTCONS_00047752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047752 ID=TCONS_00047752|Name=TCONS_00047752|organism=Clytia hemisphaerica|type=transcript|length=3494bp
aatgatatgatacagccatgcataatttttaaaatatgcatgatacagta
attatgcatggctgtatcattgtttttatgctagagtacataattattca
acacggctgcttcttaaaaaaaaggtctatcaaaTCATAATAGAATCAgg
cttttccaggaagaaaTAAGTAGGAGAGCGAGGAATCACTCACGTAACAA
AGGCGgcaatctaaaatatgttccgttcgcgtcgcccgaccgactcacct
tcaaaacataaacCCCGAGTCGGACAAGGCTGAAAAtgtcggaaaaagtt
tttgatagctaagcacttctttgaatcatcattcgctacgagtttttgtt
tacttaacccacattgagtcctgattgagttttttcatgtacccttattg
aaattttcaagtcgaaAAATTCGGCAACGCGGCCGAAAGTAAGGTCCGCT
TTTAAGGTTCACATGCGCGCGCATATTTAATATGGCAAATCCAAGATGGT
GGCaagagattttgttgattgccgacttgattcttCGGTAtttactagat
ttaaaaaaacagATAGAATTTACTACCAACCGACcaaccgactggatttg
aagatgttttatgaCGCAAACAGAACATAGTTTAGATTGTCGCCAAAGAC
AACGCGTGCAAAGCATGCAAAGCTTTTACGGAATCGCGCATGTGAACcaa
ttttagcatttttctaTAGAATCAAAGTATAATTGACGCGCACAATTTTT
CGCTCACCATACGAGATTGAGGAACGTTTTACTATCGCGCACGCCTTATT
GAAAAGCAtgcgaatattacccaggaactTAGCTCTGgcagatcattttg
atggaagttgttggaatgtttacaaggtttgtcaatgatgacagtgccat
tgttaattttgttagatctaacAGATTGATGTTTGTAATACACCTCAACC
AAAATTCAACCTCCTCGCGTTGTTGCTACGCAACACTTTTTGGAAGGTAA
ATAAAGCGTGATATTGCGGTTTTCAGGCGAAAAGCCTTacaaaacatcca
aaatattgatgccaaagagcctccaaatcaactgaagaaccaccgaagtt
gttgtttttctctttcttatagcttctgctagcatcttgaaagctttgtt
tagtttgtttttttcaaattcactgAAATGAAGTGTATTTTTAGGAAGAT
ATAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGAGAacca
tttatgtttacctcccaatttcaacggatccattttagcgcaattgtttt
tgtggaatttccgatgagGTGTATTGCACTTTTGCAGTTTTGATTCACAT
TAAAGAATTACCTATATTCTAGTTTTCATGTTGTTAGATATGCTGTTTTA
GAGTTTTGGAGAGAGagagataaaaactgcaattatttttttttaaattg
acataTTTCGCGCGCGGACACGCATGTGCTGAAAAccgcaatttttttaa
caatgaaatgctgaatcaacagaaaagtaaagaaagtaaatcaatgaaaa
ttgccattttcggcaattattgccctttttggaaagaaaagttgatttta
ttattgaacatgTGGTATTTGACACCATCGCAATTAGTAGGGCCACTGTG
CCTTGTTTAGTTTTGTCTTCAACTGGTTTTGTTGGAAATGTAGACTAGAA
AAAAAGTCAAGTCAAATGCAAACAAACTTACAATCTGTTACAATGggagt
tttgtttttttccttctggctgtgtttcggcatcgatgcaggatcttttt
acatataattttagaacttttcatgttattgagcaacgaaggattgaaaa
agtcacttttaaaaatccaaaaaaccttttctttgatgggattttacaat
tttcaaacacctctgtcATTTTGACCTTAAGGACAActtattttgctgtt
tttagCAATAAttgctgtttttattttattaataccCAATTGAATGTGAT
CAGGTCAAGCCTGAAAATATCtggattttcattatttttttacagtTTTA
GACGATCATCTGTAGAAAAGTGTTGTCTAACTGCCTTTTTATTAGGCTGT
TAGGTTTCTAGGTGGGTAGGGCGTTAAAGGAAGGAACATCTCTGATATTT
GGAACAATATAAAGGGTCTATAATACAACGACCCACAGTATGGCTCAAGA
TTTTTCGGGCCACTTGGTTatttttaacttgaaaaagtCCCAAACATTAC
CTGAACTGGCCCTTGCATGTTTGAGGGCGTGTTTGGGCCAGGTTTTTGGa
ggcaaaaatacaaaatagtttAGCTAAAAGAATacctattttgatttttt
tggtccAAACATGACCCATAAATGTTTATACAGGTCATACAGTGGGTAAg
tatattaaaaaatttgggcaaatgcaaagcaaaaaaagatgaaaatgatg
taACTTTTGACCTAAATAGTTTATAAAattgaccaatcaaatttgAAGAT
AGCATTCAACTAGAACATTCTTTACCTTTCACACAAGAGTTAATTTCCAC
ATCAATGTGAAAATATATTCACATGAGGTAATTTTAGTTATTAACTTTTA
TGACTTTTTAATATCTTTCAGTGATCAGTAAGATAGTTATAAAATAAGTG
AAAGATAAAATCAACATGTTTGGTGGTGGAAATAATTTGGAGAGTAtcct
tttcaacaaattttactAAATCACATGCAAAATACATGTCAACACAATTC
CATTAGCTTAAGAACAGTGATCCCTTTATATTTCAAGATAAATTATGTTG
AAAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTTTcatat
tattcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACT
TGAAGtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaa
gaagaaaaggcagaaaaattaaaattgaaaaagGCCATTCAAAAAGGAAA
TGTAGATGGAGCAAGGATATATGCTGAAAATGCAATCAGACAAAAGAATC
AAGCACTACACTTTTTGAAATTATCTTCAAGAGTAGATGCAGTATCACAA
AGAGTACAAACAGCCGTCACAATGAAACAGGTCACAGGCTCAATGTCCAG
CGTAGTAAAATCAATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGG
TGTCAGCTATGATGGATAAATTTGAGAAGCAATTCGAACAATTGGACGTT
CAAACACAAGTCATGGATGAAACAATGAGTGCTTCAACGACCCTTACTGT
TCCACAGAATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACG
GCCTTGAAGTGAATATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGA
GCTGCAAGCGCATCAACCAGTGCCTCACAAGAACAGGACGATTTATCACT
TCGATTGGCCAAGCTTCGGCAGTAAATTCTTGGCTCCTCTACNN
Run BLAST on NCBI

protein sequence of TCONS_00047752-protein

>TCONS_00047752-protein ID=TCONS_00047752-protein|Name=TCONS_00047752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MLKGVYQNNLISCIHNFHIILNLVSNLLYAEQLFNLKFAAKNLERSSKKC
EKEEKAEKLKLKKAIQKGNVDGARIYAENAIRQKNQALHFLKLSSRVDAV
SQRVQTAVTMKQVTGSMSSVVKSMDSALKSMNLEKVSAMMDKFEKQFEQL
DVQTQVMDETMSASTTLTVPQNQVDSLLHQVADEHGLEVNMELPNSEAGA
IGAASASTSASQEQDDLSLRLAKLRQ
Run BLAST on NCBI

transcript from alignment at scaffold_136:125964..133071+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047752 ID=TCONS_00047752|Name=TCONS_00047752|organism=Clytia hemisphaerica|type=transcript|length=7108bp|location=Sequence derived from alignment at scaffold_136:125964..133071+ (Clytia hemisphaerica)
aatgatatgatacagccatgcataatttttaaaatatgcatgatacagta
attatgcatggctgtatcattgtttttatgctagagtacataattattca
acacggctgcttcttaaaaaaaaggtctatcaaaTCATAATAGAATCAgg
cttttccaggaagaaaTAAGTAGGAGAGCGAGGAATCACTCACGTAACAA
AGGCGgcaatctaaaatatgttccgttcgcgtcgcccgaccgactcacct
tcaaaacataaacCCCGAGTCGGACAAGGCTGAAAAtgtcggaaaaagtt
tttgatagctaagcacttctttgaatcatcattcgctacgagtttttgtt
tacttaacccacattgagtcctgattgagttttttcatgtacccttattg
aaattttcaagtcgaaAAATTCGGCAACGCGGCCGAAAGTAAGGTCCGCT
TTTAAGGTTCACATGCGCGCGCATATTTAATATGGCAAATCCAAGATGGT
GGCaagagattttgttgattgccgacttgattcttCGGTAtttactagat
ttaaaaaaacagATAGAATTTACTACCAACCGACcaaccgactggatttg
aagatgttttatgaCGCAAACAGAACATAGTTTAGATTGTCGCCAAAGAC
AACGCGTGCAAAGCATGCAAAGCTTTTACGGAATCGCGCATGTGAACcaa
ttttagcatttttctaTAGAATCAAAGTATAATTGACGCGCACAATTTTT
CGCTCACCATACGAGATTGAGGAACGTTTTACTATCGCGCACGCCTTATT
GAAAAGCAtgcgaatattacccaggaactTAGCTCTGgcagatcattttg
atggaagttgttggaatgtttacaaggtttgtcaatgatgacagtgccat
tgttaattttgttagatctaacAGATTGATGTTTGTAATACACCTCAACC
AAAATTCAACCTCCTCGCGTTGTTGCTACGCAACACTTTTTGGAAGGTAA
ATAAAGCGTGATATTGCGGTTTTCAGGCGAAAAGCCTTacaaaacatcca
aaatattgatgccaaagagcctccaaatcaactgaagaaccaccgaagtt
gttgtttttctctttcttatagcttctgctagcatcttgaaagctttgtt
tagtttgtttttttcaaattcactgAAATGAAGTGTATTTTTAGGAAGAT
ATAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGAGAacca
tttatgtttacctcccaatttcaacggatccattttagcgcaattgtttt
tgtggaatttccgatgagGTGTATTGCACTTTTGCAGTTTTGATTCACAT
TAAAGAATTACCTATATTCTAGTTTTCATGTTGTTAGATATGCTGTTTTA
GAGTTTTGGAGAGAGagagataaaaactgcaattatttttttttaaattg
acataTTTCGCGCGCGGACACGCATGTGCTGAAAAccgcaatttttttaa
caatgaaatgctgaatcaacagaaaagtaaagaaagtaaatcaatgaaaa
ttgccattttcggcaattattgccctttttggaaagaaaagttgatttta
ttattgaacatgTGGTATTTGACACCATCGCAATTAGTAGGGCCACTGTG
CCTTGTTTAGTTTTGTCTTCAACTGGTTTTGTTGGAAATGTAGACTAGAA
AAAAAGTCAAGTCAAATGCAAACAAACTTACAATCTGTTACAATGggagt
tttgtttttttccttctggctgtgtttcggcatcgatgcaggatcttttt
acatataattttagaacttttcatgttattgagcaacgaaggattgaaaa
agtcacttttaaaaatccaaaaaaccttttctttgatgggattttacaat
tttcaaacacctctgtcATTTTGACCTTAAGGACAActtattttgctgtt
tttagCAATAAttgctgtttttattttattaataccCAATTGAATGTGAT
CAGGTCAAGCCTGAAAATATCtggattttcattatttttttacagtTTTA
GACGATCATCTGTAGAAAAGTGTTGTCTAACTGCCTTTTTATTAGGCTGT
TAGGTTTCTAGGTGGGTAGGGCGTTAAAGGAAGGAACATCTCTGATATTT
GGAACAATATAAAGGGTCTATAATACAACGACCCACAGTATGGCTCAAGA
TTTTTCGGGCCACTTGGTTatttttaacttgaaaaagtCCCAAACATTAC
CTGAACTGGCCCTTGCATGTTTGAGGGCGTGTTTGGGCCAGGTTTTTGGa
ggcaaaaatacaaaatagtttAGCTAAAAGAATacctattttgatttttt
tggtccAAACATGACCCATAAATGTTTATACAGGTCATACAGTGGGTAAg
tatattaaaaaatttgggcaaatgcaaagcaaaaaaagatgaaaatgatg
taACTTTTGACCTAAATAGTTTATAAAattgaccaatcaaatttgAAGAT
AGCATTCAACTAGAACATTCTTTACCTTTCACACAAGAGTTAATTTCCAC
ATCAATGTGAAAATATATTCACATGAGGTAATTTTAGTTATTAACTTTTA
TGACTTTTTAATATCTTTCAGTGATCAGTAAGATAGTTATAAAATAAGTG
AAAGATAAAATCAACATGTTTGGTGGTGGAAATAATTTGGAGAGTAtcct
tttcaacaaattttactAAATCACATGCAAAATACATGTCAACACAATTC
CATTAGCTTAAGAACAGTGATCCCTTTATATTTCAAGATAAATTATGTTG
AAAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTTTcatat
tattcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACT
TGAAGGTAAGtctcaaaaactttttacagTATTAAATGTTATCTATTATA
GTAAATTGTCATTGAAAATATGCATAAGCCATCAGGAATGAAGCTGTTGA
ATGAGCTGTAACTTTAAATTAAAGATTGTTCAAATAtattgctttgtttt
tgtagtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaa
gaagaaaaggcagaaaaattaaaattgaaaaaggtaACAATGATGTGCTG
TGATGTGATGAAACTATTTATTCGTACTCTCTCTATATATATGATGTAGA
TATCAACTCCCTTTTATAGCAGAACTTCCAAAATAAAGTTGTAGCTATAC
CCTCAGCTTAGTATGAAAAAGTAATTATGTTACTTGAAATTATTTATAAA
ATGATATCCTAATTTTAGGCCATTCAAAAAGGAAATGTAGATGGAGCAAG
GATATATGCTGAAAATGCAATCAGACAAAAGAATCAAGTAAATACACATT
ATTACACTGTTTTGTATATCGTTTGAAAATATTGTTTATTGATTGGAAAT
AATTAGCTATCAATAATTAAGCTTTTTAAATGCTTCTTAAAGGCTTTTGA
AACCAATCAAGTTACACCAAGATTTTACAGTGGATATGCTTCCTACTGAT
TTATTTCTTTACCGTTTTCAGGCACTACACTTTTTGAAATTATCTTCAAG
AGTAGATGCAGTATCACAAAGAGTACAAACAGCCGTCACAATGAAACAGG
TACTTGTTGTTGCTTATATGGGATGCATGTGATTGGATATAGAAATTGGA
TTTATTGTATACTGTAAAccaggggggtcggtactaagttGTGGGGGCCA
GTGCCGGGTAGTGGTCTgataaggtaagtaaaaaacaacttagtacatgg
tactaagtggtggtccTAATTGAAAAAGACATTTTTACAACTGTGTCAAG
GGACTAGATGGTGGTCTCAATACCAAATATGAGGCATCAAGTTAGTATCT
GGTACTCAAAATCCTGCAAAAgcataaaaaatgttcttttactTTCTCTT
GACTTAaccaatttttaagaaaatgcaagaaaatgcaagaaaatGAGTTG
AATAGaaagtttttaaagtttttttgctgttttcacAGCATGCAATTAGT
GGTCACCATTTGTttgatttaatttgtttttattattttaggtaaattct
aattatataagtgaataatttttttccagcaaatttattttttgatgtcG
GTCAATTGTTGAATCTGTTTATTTCAGTAATTTTCATTTGGCTATAATTC
GGTTTGCACTGATAGCTAGAGTAGCGTGTAACCCTTTGAATAACtgagga
gaaaaaaaaacagttatTTATCAACTTAGCTTGATTAAAGTTTATGTTGA
TGATGTTTCAAATTAAAGATTAATTAATTAGTTAAATAGagctaaatttg
tttttatttgaaactttacttcttttgattaaaaaagaattagcttgaaa
atgataatttgGCTTGACCTAACTTGACAGGAATTTTTTCTGAGATATTG
AGGGTTGTACAGAGTGGTGTGGTACAGAGTGGtgttataaagtttttttc
gaaaatttaaaggaggtGTACCAGAAAGTACCATTACGAAGAAAAAaggg
tggtatacctattttgaGGGAGAAAATCAACTCAGTAGAGGGTACTTAAG
GGTGGTGTGTCATTTCTCAATGTTGATATCAAGATTGTACCCAGTTGTAC
CGGGTACTTAGGTGTGGTAGATctattttaaggggtaaattcaacttagt
accagggtactaagtggtggtggtctcagataaatttcaaaaaacaaaaa
aagtacaaCTTTTCAGCACTGGTCCAGTACCACATTTTGGTACCCCCCCC
ATGTGTAAACAATTTTCTTGATAATATGTATCGTTGATTTCTAGTACAGT
CTCTACAACAAGAtgatatttttcacaaaaacaaCACCTATAAACATACT
AANACAGTTTCTTCAAGATgatattttctataaaaacaacaCCTATAAGG
ATACAGTGGCTAAGCTTAAAATGATATAATGCATAATATAtgttatatat
atttatttttttgtcagGTCACAGGCTCAATGTCCAGCGTAGTAAAATCA
ATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGGTAAGCAAAATGAT
ATTATTTTCTCAGGTGttttaaaaagtataaaagTTTGATTTAACATTCC
TAGAAATATGTATGTGCCATCAATCTAAACCCTTTGCTGTTCAAAAgagt
tgaaaaatgtcaatttaatTATGCTCTTTTATTTTACTTTGCGCGTtcca
tttcaaaaatttataacaaTAAATTCAGATGTTCCTTCTGTTGTCTCTAT
TGAGAGGAACAACAATTTTCATGCGAAAGTTGTACGTTCACAAGGATGAT
ATCATGATATCATGATCATGTTTTGCAGGTGTCAGCTATGATGGATAAAT
TTGAGAAGCAATTCGAACAATTGGACGTTCAAACACAAGTCATGGATGAA
ACAATGAGTGCTTCAACGACCCTTACTGTTCCACAGGTTACTATCATAAt
tatgaatatcaagaatatgATGTTAATTATTCCCTTAATATTTGCTCTTG
ATATGGGTCTAAAATTGTGTTAGTTGTAAAAGAAATTCGTTGTCAGCATt
ctgtttaaaattaaaaaagtggAAATGAATGGCTGAATCgagggaaaaat
agaaaatgaacaTTCAcgcttttctaaattttacactTCATCATTTTTAG
AATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACGGGTAAGT
TGCAAGAAATAAGATCTTAAAGTCACCGCTACATAAACCTTCAAGTGATT
ATTCTAGTATATGATAATGTGTAAGATTTGTTCACTGAGGAATTAAAAAA
CGTTAATGCTTGATTGTCTTCAAAACGCCATATTGTATCTTACAGTATCA
AATCCGTCCAGCTGAGAGACAAATACATCACCATGATCACTAATCCTAAG
GTTTCCGTCCATACATGCTTTTTATAGGCAAGTGTCggcccttggtcagg
ctcgagtaTGCTTAAGCTTCCAAAGCATTCAGGCATAgcatatgcttatt
atatgcttatgaactattatgcttttgattcacccaacccaattttttat
aaaacttcAGAAATTATGTTAACATTCGATTCAAAAAGCATTTAGATTTT
TGGAGCAGTAAAATGTGGCTATTCGTGGAATGTCTGTTTTTACTTGATCA
TTTCCAAACCTTTTTGAACAGAAAAAGATTGACCTCatgaaatatttcag
gctggcgTATATCCTTTTGCCATgttaggaaatctgcaaatctgagcctt
cagaTGCTCATAAgctttatgcttataaaaaaacatgtattcacAAAAcc
ttgttttattttaacacaGATCTGAAAAAAAGTCTATgagttattttgtt
tttgttaaccTTTATGTATCAATTATTGCACCTACAGCCTTGAAGTGAAT
ATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGAGCTGCAAGCGCATC
AACCAGTGCCTCACAAGAACAGGTAACATTAATAGCATGTACCTCCTTCT
ATCTTATCGTCTCAACAtgcgcgcgctgcaatcgcaccttttggcttcaa
tcctaaaaaaagattacgtcataaaaatgtagcgcacgctcaaaaaaagt
tgaacaaccgctacgtcagatcgcgccaatggagcttcttcatttttctt
ttgaccaatagtttggaagctttgcttgaaaaagtgcgatcgaagcgcgc
gcaagtggagatcGGCCTTTATAACAAAGATCAAGAACATTCGTTGCATA
ATTTTGCCTCTTCGTTGAAGTGAAATGCAAGTTTGAAGACTCAGTATGAg
ccaacttttgttttttttgctcggATAGCTAGAAATAGGTACGAACCAAC
CTCGAGGTTACAATAGAGATAGGCTGTGAAATCTATATAATATTATCCTT
TTATGAAATAAAGGAACTTGCTTTCTATGTTATATTGCTACAAGttcttc
ttcaaaataaagataGATGTATAAATATTATTTACTTCTTCGCTTTTTAG
GACGATTTATCACTTCGATTGGCCAAGCTTCGGCAGTAAATTCTTGGCTC
CTCTACNN

Coding sequence (CDS) from alignment at scaffold_136:125964..133071+

>TCONS_00047752 ID=TCONS_00047752|Name=TCONS_00047752|organism=Clytia hemisphaerica|type=CDS|length=6129bp|location=Sequence derived from alignment at scaffold_136:125964..133071+ (Clytia hemisphaerica)
ATGTTGAAAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTT
TcatattattcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTT
TTAACTTGAAGtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgt
gaaaaagaagaaaaggcagaaaaattaaaattgaaaaagGCCATTCAAAA
AGGAAATGTAGATGGAGCAAGGATATATGCTGAAAATGCAATCAGACAAA
AGAATCAAGCACTACACTTTTTGAAATTATCTTCAAGAGTAGATGCAGTA
TCACAAAGAGTACAAACAGCCGTCACAATGAAACAGGTCACAGGCTCAAT
GTCCAGCGTAGTAAAATCAATGGACTCTGCTTTAAAGAGTATGAACCTTG
AAAAGGTGTCAGCTATGATGGATAAATTTGAGAAGCAATTCGAACAATTG
GACGTTCAAACACAAGTCATGGATGAAACAATGAGTGCTTCAACGACCCT
TACTGTTCCACAGAATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACG
AACACGGCCTTGAAGTGAATATGGAATTACCGAACAGTGAAGCTGGAGCC
ATTGGAGCTGCAAGCGCATCAACCAGTGCCTCACAAGAACAGGACGATTT
ATCACTTCGATTGGCCAAGCTTCGGCAGTAAATGTTGAAAGGTGTTTATC
AAAACAACCTAATTTCATGCATACATAATTTTcatattattcttaacttg
gtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACTTGAAGtTTGCAGC
AAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaagaagaaaaggcag
aaaaattaaaattgaaaaagGCCATTCAAAAAGGAAATGTAGATGGAGCA
AGGATATATGCTGAAAATGCAATCAGACAAAAGAATCAAGCACTACACTT
TTTGAAATTATCTTCAAGAGTAGATGCAGTATCACAAAGAGTACAAACAG
CCGTCACAATGAAACAGGTCACAGGCTCAATGTCCAGCGTAGTAAAATCA
ATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGGTGTCAGCTATGAT
GGATAAATTTGAGAAGCAATTCGAACAATTGGACGTTCAAACACAAGTCA
TGGATGAAACAATGAGTGCTTCAACGACCCTTACTGTTCCACAGAATCAA
GTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACGGCCTTGAAGTGAA
TATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGAGCTGCAAGCGCAT
CAACCAGTGCCTCACAAGAACAGGACGATTTATCACTTCGATTGGCCAAG
CTTCGGCAGTAAATGTTGAAAGGTGTTTATCAAAACAACCTAATTTCATG
CATACATAATTTTcatattattcttaacttggtTTCAAATTTGTTGTATG
CAGAGCAACTTTTTAACTTGAAGtTTGCAGCAAAAAACTTGGAAAGAAGC
TCAAAGAAatgtgaaaaagaagaaaaggcagaaaaattaaaattgaaaaa
gGCCATTCAAAAAGGAAATGTAGATGGAGCAAGGATATATGCTGAAAATG
CAATCAGACAAAAGAATCAAGCACTACACTTTTTGAAATTATCTTCAAGA
GTAGATGCAGTATCACAAAGAGTACAAACAGCCGTCACAATGAAACAGGT
CACAGGCTCAATGTCCAGCGTAGTAAAATCAATGGACTCTGCTTTAAAGA
GTATGAACCTTGAAAAGGTGTCAGCTATGATGGATAAATTTGAGAAGCAA
TTCGAACAATTGGACGTTCAAACACAAGTCATGGATGAAACAATGAGTGC
TTCAACGACCCTTACTGTTCCACAGAATCAAGTGGATAGCTTGTTGCATC
AAGTTGCTGACGAACACGGCCTTGAAGTGAATATGGAATTACCGAACAGT
GAAGCTGGAGCCATTGGAGCTGCAAGCGCATCAACCAGTGCCTCACAAGA
ACAGGACGATTTATCACTTCGATTGGCCAAGCTTCGGCAGTAAATGTTGA
AAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTTTcatatt
attcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACTT
GAAGtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaag
aagaaaaggcagaaaaattaaaattgaaaaagGCCATTCAAAAAGGAAAT
GTAGATGGAGCAAGGATATATGCTGAAAATGCAATCAGACAAAAGAATCA
AGCACTACACTTTTTGAAATTATCTTCAAGAGTAGATGCAGTATCACAAA
GAGTACAAACAGCCGTCACAATGAAACAGGTCACAGGCTCAATGTCCAGC
GTAGTAAAATCAATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGGT
GTCAGCTATGATGGATAAATTTGAGAAGCAATTCGAACAATTGGACGTTC
AAACACAAGTCATGGATGAAACAATGAGTGCTTCAACGACCCTTACTGTT
CCACAGAATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACGG
CCTTGAAGTGAATATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGAG
CTGCAAGCGCATCAACCAGTGCCTCACAAGAACAGGACGATTTATCACTT
CGATTGGCCAAGCTTCGGCAGTAAATGTTGAAAGGTGTTTATCAAAACAA
CCTAATTTCATGCATACATAATTTTcatattattcttaacttggtTTCAA
ATTTGTTGTATGCAGAGCAACTTTTTAACTTGAAGtTTGCAGCAAAAAAC
TTGGAAAGAAGCTCAAAGAAatgtgaaaaagaagaaaaggcagaaaaatt
aaaattgaaaaagGCCATTCAAAAAGGAAATGTAGATGGAGCAAGGATAT
ATGCTGAAAATGCAATCAGACAAAAGAATCAAGCACTACACTTTTTGAAA
TTATCTTCAAGAGTAGATGCAGTATCACAAAGAGTACAAACAGCCGTCAC
AATGAAACAGGTCACAGGCTCAATGTCCAGCGTAGTAAAATCAATGGACT
CTGCTTTAAAGAGTATGAACCTTGAAAAGGTGTCAGCTATGATGGATAAA
TTTGAGAAGCAATTCGAACAATTGGACGTTCAAACACAAGTCATGGATGA
AACAATGAGTGCTTCAACGACCCTTACTGTTCCACAGAATCAAGTGGATA
GCTTGTTGCATCAAGTTGCTGACGAACACGGCCTTGAAGTGAATATGGAA
TTACCGAACAGTGAAGCTGGAGCCATTGGAGCTGCAAGCGCATCAACCAG
TGCCTCACAAGAACAGGACGATTTATCACTTCGATTGGCCAAGCTTCGGC
AGTAAATGTTGAAAGGTGTTTATCAAAACAACCTAATTTCATGCATACAT
AATTTTcatattattcttaacttggtTTCAAATTTGTTGTATGCAGAGCA
ACTTTTTAACTTGAAGtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGA
AatgtgaaaaagaagaaaaggcagaaaaattaaaattgaaaaagGCCATT
CAAAAAGGAAATGTAGATGGAGCAAGGATATATGCTGAAAATGCAATCAG
ACAAAAGAATCAAGCACTACACTTTTTGAAATTATCTTCAAGAGTAGATG
CAGTATCACAAAGAGTACAAACAGCCGTCACAATGAAACAGGTCACAGGC
TCAATGTCCAGCGTAGTAAAATCAATGGACTCTGCTTTAAAGAGTATGAA
CCTTGAAAAGGTGTCAGCTATGATGGATAAATTTGAGAAGCAATTCGAAC
AATTGGACGTTCAAACACAAGTCATGGATGAAACAATGAGTGCTTCAACG
ACCCTTACTGTTCCACAGAATCAAGTGGATAGCTTGTTGCATCAAGTTGC
TGACGAACACGGCCTTGAAGTGAATATGGAATTACCGAACAGTGAAGCTG
GAGCCATTGGAGCTGCAAGCGCATCAACCAGTGCCTCACAAGAACAGGAC
GATTTATCACTTCGATTGGCCAAGCTTCGGCAGTAAATGTTGAAAGGTGT
TTATCAAAACAACCTAATTTCATGCATACATAATTTTcatattattctta
acttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTTAACTTGAAGtTT
GCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtgaaaaagaagaaaa
ggcagaaaaattaaaattgaaaaagGCCATTCAAAAAGGAAATGTAGATG
GAGCAAGGATATATGCTGAAAATGCAATCAGACAAAAGAATCAAGCACTA
CACTTTTTGAAATTATCTTCAAGAGTAGATGCAGTATCACAAAGAGTACA
AACAGCCGTCACAATGAAACAGGTCACAGGCTCAATGTCCAGCGTAGTAA
AATCAATGGACTCTGCTTTAAAGAGTATGAACCTTGAAAAGGTGTCAGCT
ATGATGGATAAATTTGAGAAGCAATTCGAACAATTGGACGTTCAAACACA
AGTCATGGATGAAACAATGAGTGCTTCAACGACCCTTACTGTTCCACAGA
ATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAACACGGCCTTGAA
GTGAATATGGAATTACCGAACAGTGAAGCTGGAGCCATTGGAGCTGCAAG
CGCATCAACCAGTGCCTCACAAGAACAGGACGATTTATCACTTCGATTGG
CCAAGCTTCGGCAGTAAATGTTGAAAGGTGTTTATCAAAACAACCTAATT
TCATGCATACATAATTTTcatattattcttaacttggtTTCAAATTTGTT
GTATGCAGAGCAACTTTTTAACTTGAAGtTTGCAGCAAAAAACTTGGAAA
GAAGCTCAAAGAAatgtgaaaaagaagaaaaggcagaaaaattaaaattg
aaaaagGCCATTCAAAAAGGAAATGTAGATGGAGCAAGGATATATGCTGA
AAATGCAATCAGACAAAAGAATCAAGCACTACACTTTTTGAAATTATCTT
CAAGAGTAGATGCAGTATCACAAAGAGTACAAACAGCCGTCACAATGAAA
CAGGTCACAGGCTCAATGTCCAGCGTAGTAAAATCAATGGACTCTGCTTT
AAAGAGTATGAACCTTGAAAAGGTGTCAGCTATGATGGATAAATTTGAGA
AGCAATTCGAACAATTGGACGTTCAAACACAAGTCATGGATGAAACAATG
AGTGCTTCAACGACCCTTACTGTTCCACAGAATCAAGTGGATAGCTTGTT
GCATCAAGTTGCTGACGAACACGGCCTTGAAGTGAATATGGAATTACCGA
ACAGTGAAGCTGGAGCCATTGGAGCTGCAAGCGCATCAACCAGTGCCTCA
CAAGAACAGGACGATTTATCACTTCGATTGGCCAAGCTTCGGCAGTAAAT
GTTGAAAGGTGTTTATCAAAACAACCTAATTTCATGCATACATAATTTTc
atattattcttaacttggtTTCAAATTTGTTGTATGCAGAGCAACTTTTT
AACTTGAAGtTTGCAGCAAAAAACTTGGAAAGAAGCTCAAAGAAatgtga
aaaagaagaaaaggcagaaaaattaaaattgaaaaagGCCATTCAAAAAG
GAAATGTAGATGGAGCAAGGATATATGCTGAAAATGCAATCAGACAAAAG
AATCAAGCACTACACTTTTTGAAATTATCTTCAAGAGTAGATGCAGTATC
ACAAAGAGTACAAACAGCCGTCACAATGAAACAGGTCACAGGCTCAATGT
CCAGCGTAGTAAAATCAATGGACTCTGCTTTAAAGAGTATGAACCTTGAA
AAGGTGTCAGCTATGATGGATAAATTTGAGAAGCAATTCGAACAATTGGA
CGTTCAAACACAAGTCATGGATGAAACAATGAGTGCTTCAACGACCCTTA
CTGTTCCACAGAATCAAGTGGATAGCTTGTTGCATCAAGTTGCTGACGAA
CACGGCCTTGAAGTGAATATGGAATTACCGAACAGTGAAGCTGGAGCCAT
TGGAGCTGCAAGCGCATCAACCAGTGCCTCACAAGAACAGGACGATTTAT
CACTTCGATTGGCCAAGCTTCGGCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030406XLOC_030406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047752-exon-scaffold_136-1491911889:125964..128868TCONS_00047752-exon-scaffold_136-1491911889:125964..128868Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:125964..128868TCONS_00047752-exon-scaffold_136-1510915933:125964..128868Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:125964..128868TCONS_00047752-exon-scaffold_136-1575043694:125964..128868Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:129019..129096TCONS_00047752-exon-scaffold_136-1491911889:129019..129096Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:129019..129096TCONS_00047752-exon-scaffold_136-1510915933:129019..129096Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:129019..129096TCONS_00047752-exon-scaffold_136-1575043694:129019..129096Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:129282..129350TCONS_00047752-exon-scaffold_136-1491911889:129282..129350Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:129282..129350TCONS_00047752-exon-scaffold_136-1510915933:129282..129350Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:129282..129350TCONS_00047752-exon-scaffold_136-1575043694:129282..129350Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:129535..129612TCONS_00047752-exon-scaffold_136-1491911889:129535..129612Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:129535..129612TCONS_00047752-exon-scaffold_136-1510915933:129535..129612Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:129535..129612TCONS_00047752-exon-scaffold_136-1575043694:129535..129612Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:130981..131049TCONS_00047752-exon-scaffold_136-1491911889:130981..131049Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:130981..131049TCONS_00047752-exon-scaffold_136-1510915933:130981..131049Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:130981..131049TCONS_00047752-exon-scaffold_136-1575043694:130981..131049Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:131342..131449TCONS_00047752-exon-scaffold_136-1491911889:131342..131449Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:131342..131449TCONS_00047752-exon-scaffold_136-1510915933:131342..131449Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:131342..131449TCONS_00047752-exon-scaffold_136-1575043694:131342..131449Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:131664..131707TCONS_00047752-exon-scaffold_136-1491911889:131664..131707Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:131664..131707TCONS_00047752-exon-scaffold_136-1510915933:131664..131707Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:131664..131707TCONS_00047752-exon-scaffold_136-1575043694:131664..131707Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:132401..132485TCONS_00047752-exon-scaffold_136-1491911889:132401..132485Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:132401..132485TCONS_00047752-exon-scaffold_136-1510915933:132401..132485Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:132401..132485TCONS_00047752-exon-scaffold_136-1575043694:132401..132485Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1491911889:133014..133071TCONS_00047752-exon-scaffold_136-1491911889:133014..133071Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1510915933:133014..133071TCONS_00047752-exon-scaffold_136-1510915933:133014..133071Clytia hemisphaericaexon
TCONS_00047752-exon-scaffold_136-1575043694:133014..133071TCONS_00047752-exon-scaffold_136-1575043694:133014..133071Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047752-proteinTCONS_00047752-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:125964..133071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.4986	33.4923	25.2406	23.1842	14.7184	11.6716	17.8473	20.4279	20.6946	19.3905	23.3625	17.0973	25.3289	20.2339	16.8147	18.1048	14.3952	16.907	22.6283	30.0993	23.4889	21.5481	23.2322	24.0917	31.4172	34.1448	29.9022	24.6942	23.5865	22.2362
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
Blast
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BLAST of TCONS_00047752 vs. Swiss-Prot (Human)
Match: CHM1B (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.460e-57
Identity = 134/195 (68.72%), Postives = 167/195 (85.64%), Query Frame = 2 
Query: 2885 EQLFNLKFAAKNLERSSXXXXXXXXXXXXXXXXXIQKGNVDGARIYAENAIRQKNQALHFLKLSSRVDAVSQRVQTAVTMKQVTGSMSSVVKSMDSALKSMNLEKVSAMMDKFEKQFEQLDVQTQVMDETMSASTTLTVPQNQVDSLLHQVADEHGLEVNMELPNXXXXXXXXXXXXXXXXQEQDDLSLRLAKLR 3469
            + LFNLKFAAK L RS+KKC+KEEKAEK K+KKAIQKGN++ ARI+AENAIRQKNQA++FL++S+RVDAV+ RVQTAVTM +VT SM+ VVKSMD+ LK+MNLEK+SA+MDKFE QFE LDVQTQ M++TMS++TTLT PQNQVD LL ++ADE GL++NMELP  + G++G + AS     EQD+LS RLA+LR
Sbjct:    6 KHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA----EQDELSQRLARLR 196
The following BLAST results are available for this feature:
BLAST of TCONS_00047752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM1B2.460e-5768.72Charged multivesicular body protein 1b OS=Homo sap... [more]
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