XLOC_030209 (gene) - C. hemisphaerica

Overview
NameXLOC_030209
Unique NameXLOC_030209
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_128:35107..43938+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030209 ID=XLOC_030209|Name=XLOC_030209|organism=Clytia hemisphaerica|type=gene|length=8832bp|location=Sequence derived from alignment at scaffold_128:35107..43938+ (Clytia hemisphaerica)
ATGGATTTAGttcagaaaatatatagttTACTTCGAGTTGTCAAGGACGT
TGAAACTAATGGAATAATGAGATGGAGGTCAGTggtctaaatttttgaaa
gccTGTCTCAAAACTAGTTTATTGCATTCTGAAGCTGAAGGCAGAATTAA
CCAAATATCAAATGTTTGGAGATTAATAACCGCTNTATTTTGAAGCTGAA
GGCAGAATTAACCAAATATCAAATGTTTGGAGATTGATAACCGCTTGTAA
TGTTTTAACATTCTGAAACCTTACTGTAAAGTTATTCTCTAGAAGATTTA
GAAGTTTCCAAACGCCATCCAAAGATGTTGAGGTTACTGCTCACATTGAC
AGTCTTTTCAACATGGAATATGTTGGAGGTGTTTGGTGAAGGTGAACAAT
CTCCTCCTGTCGTTCAACAATCAACAAATATGTTCAACAACTTGACGTTA
GAGACTTTCGAACAGTCAACAAAAGAGAAAGATATAATGTTGGTTCTCTT
CTTTGTACCATGGTGAGTCATCGAccgtttagatttttttaatctACTCC
cagtggaggtcctataaataaACTGATGTTCGTTCGTCTTCAGAAATCTC
CATTTTtccagattttcattggactttttccttatatttctttgttattt
attttcacagaaaaacattattgataacaatgctcaccatcaagcatgtt
tcaattgataataaactgatttttgcaaccggaactttctatctattttt
tccttacaaccctttcctctccccccatcaacaatcaatgatgaaattta
atgcgcTATGCATTTTTGCTAAACGCTTTATTTACTGActggttgttttc
atttttctccttattgctatctaactttcatcatcaggtaggtccattca
gcaccTAGCTTGTTTAATCTACTCCCAGGTGTTTTAAGCAATAAGAGCAC
CCTCCCTGTTTGTTAATGTTATTTTTGAGGGGGTTTTTAGAAGTACAAAT
TCTGTCCTGTAGCCCTCCTGTTTGTCTTAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCATAGCttttctagatcgaaaataatcga
gggtggtagattctacccccccctggggatacaaaagtcaaaaaagcttg
gggctaatagggttaatacGGTTCTTTCTTTCCCAGACAGGACAGATCCC
ATTGAGGATGGTTCTGCACTATAATGCTATTAGTAATTAAGTAATTTAAT
CAAACATGCACTCGCTTCCTTGACTAgtgataaacaaaaaatttccattt
cgttcatttatttcaaatataGGTGTCCACATTCTAAAGCGATCCAACCA
GAATGGGAGAAAGCATCAAATGTACTTGAACAACAAAAGGAATATGTTCT
TGGTCGAGTCAATTGTGAAGATAGTGGGAAAACACTTTGTGAAAAATATG
ACGTCAAAAAATATCCGACAGTTAAGTTATTCCGACATGGACAGTTCCAA
GAAGATTTTGATGGCAGAAATGCAGGTTTgatgcttttttttataagaac
atgtaaATTTTGTTTAAGGCTCGGCTGTTCTCATTTTCACGAAGGGAGCT
CTCAAAATCATCCCCAATCCCTTATTAGTAATTtttgaggctcagattgt
tatCATTTTGTTCTTAGGGTTAGACCAGATTTACCTAAAGAAATCATGAA
GTTGGTCTCACAAAAACTAATGAATACAGATTTTAATTTGCTtggagttg
aaaaatttcaaaattggttgAGCTTGCGTCCATGAACAAATGGGTCTTTC
TTGAATTTTGGCCTTTTGGTTTCGATAGATAATAGCTTTTATTGACTTTT
TTGTtgagttacacgttttttttttaataaggaacacgtttataaggaac
tcgaggctgaaaatggtccaaaaaataaggaattgttaaggaactgctca
ggctgagaataagaaaactagttttaaggaatccaatttttgcgaatcca
aacttagcagctatgtaaataaggaactcgataaggaactttgaggctga
aattctctgtaaaaataaggaactccaggctcagagcaaagttaaggttc
cttataaaaaaaaaacgtgtaattggtTTTCACCCTGTCTCTTTTTCCTA
TTAGTACTTTTTGTAAATCTAGGAAACTAATTTCGGTGGGAACTTCTTTT
GGCGGGCAGCAAAAATCctgaaaagaatttaaattttgtGGAATAATTTC
AGCGAATAGCAGGGTAAATTGGTTCATTTTTGCCTGTAAAATGAATCCGT
taggcaaaaattaagttttattttAGAAAACGATGAAAAATCTAGTTTCG
GCGAGGAACTTACTTTGCTAAGggagtaatttttttattttagcgataac
taattttgaaGAATGAGTTGCCTTAAAGATAAATTTAATgagataaaaaa
atctttcagaaGTTTTTGATTTCTTCAGATTCATTAATCGATTTCGTACA
AAGAGCACAATCAACAAACGGACCTGTTGGAACGACACCAACGCCACCCT
CTACTTCAACCACACAATCACCGCCACAGCAAACAGGGGCGTCTCTGGTG
AACAGTGAGCAACAAACACAACAACAGCCACAAGCACAAGTTGTCACTCA
ATACCAATCAGCAGGTGGTGGGTTACTTACTCatacgtcaaaacaacgtt
tatttaacagcctaggctacgtcatatatcttccttcgtttcaaaaacta
aaaaagccTGGAGCTATCTTTGTATAGATTATTAACAGCCATAATATTCA
TAGATTTTAGGATATACGATATACATTGAAACAGTATTGTTAATCAGTTT
ACCTATAAATAAACTAACAGTTATTTCATCCTATTTTTTCTAGAGACTAT
CACACGGGAAAgcataaagcttttaatgccaATATAATCAGTGTAGTTTT
TCCTGACAGTATTTATTCCTTTACTGCCTTACTGTTAGAAACataaattt
tcctttatttCCTCTCTAGAAAACGTGAACAGCCAACAGCAGCAAGTTTC
AGCGCCTGTTGTACAAACACAAAACCAACCCCAAATTGCAGAAAATGCAC
CCGTAAATCCGCCCTCGAATCCGCCATCTAATACTCCAGCGGGCGGAAAT
TCAATTCAAGGATTTCAATCCGAAAataaactttcacaacaaaaagCAGG
ACCAAGTCTAATGTCTTTATATGAATCCGTCTCTAAAACTAAAGGTGGGC
CTCACCCTTTATACCCACAAACATTCCATTCACAAGGCCCCGTTGGAACA
GCTCCGGCCTCAATAAGCCAAGAACCTTTTATACCAAAGCGAGATGCTGC
CATTATGAATTACGTCATGAACCGACATGAAGAAATAAAACAATCACCGG
GCGATTATCAGAGATTGGTAACTTCGAAAGATGTTGATCAAATCAAGAAA
TATTACGAATGGAAATTCAAACAACTGTCCTTACcagagaaagaaaaaca
aaaacgtaTTGAACTTGGTTCTATGTTACTGGGAGATAAACGCGCAAAAG
ACTAAACGCAAGCTGTACTAATATATTTCTCCATCNTTCAAGGATTTCAA
TCCGAAAataaactttcacaacaaaaagCAGGACCAAGTCTAATGTCTTT
ATATGAATCCGTCTCTAAAACTAAAGGTGGGCCTCACCCTTTATACCCAC
AAACATTCCATTCACAAGGCCCCGTTGGAACAGCTCCGGCCTCAATAAGC
CAAGAACCTTTTATACCAAAGCGAGATGCTGCCATTATGAATTACGTCAT
GAACCGACATGAAGAAATAAAACAATCACCGGGCGATTATCAGAGATTGG
TAACTTCGAAAGATGTTGATCAAATTAAGAAATATTACGAATGGAAATTC
AAACAACTGTCCTTACcagagaaagaaaaacaaaaacgtaTTGAACTTGG
TTCTATGTTACTGGGAGATAAACGCGCAAAAGACTAAACGCAAGCTGTAC
TAATACATTTTTCCATCTCCAATGATAACACAATGACGAAAGCTGAACAT
TTCTAGGACAACCTGAACAAAAATACGTTGTGAAAGGTGTGGTTTTTGAA
TTGGAATGATTTCAGAATTAATACGGCCTTAATCTTTTTATATTGATAGG
ACTTTTCATAAGTTATTTTGAGTTCAAACGACTGCcttgttttgaaacaa
ttatcaaggtgattaaatccctGGAGTCTTCAAGTgcgattttttttaaa
cagagTAAACTTCTTATGGGTTCTCTTGGAAATCAATTACTAtggcaata
ttttgaaaacgagatAAAGCGTTGCTCGTAacgtaattcatgaaaaggtc
TGTTGACCTTTATGATGATTTTGGCTGACCGATAATGATAACGTTAAAAG
TGAAAGGACTTATATCGATGACTTTGGCTGACCGTCACTATTATGCACCG
GTCATGGTCCGATTTTCATCATCGTGGATAATGCATTCAGTTCGAATATT
CAGAATACATTATttagtttctcatttttatgtaaaatgcaaaacaattt
tgatttctatAAATTAATCAATCTTATACTGAATCAGATATTGAAACAAA
GTTGAATAAACCCCCGGTTCTCCATTGATTTTTGTCTGGATTCTAACCAA
AAATGTGTAGAACCAGGGGGTAGTCTTTTATATGTTACTATGATCAACCG
TTAGTAAATAAGTCTGCCAttttaaattgacattttttatcTGTGGATAT
TTTATATCTTGAAAGTAGTTTTTGATGGAAGTGTTTTCGTAGCAATACAA
CGGTAAATCTTTCGAATATTACGAATCCTGTTGATAATAATTTTCctctt
ttaaatattttcaaagggtCAGCGAAATTTTGTAAAGAAACCGTAAAATC
CAGACTTGATTCCATGATTTCCTAAGGATTTTATCAGGACTGAGCCTTAG
ATATAAAGTTGGTCTTACAACGAGTTTGCCTTATGAAAATCatgttcttt
tgaaaatttgctaaTGGGGAGAGTTTAACAGTTCTGTGAGACAGGTGTTT
AGTCTTAGTCAGATATATTTTACACTTTGTCGCTAATTCAATTATTTCTT
TCAATTTGCTTACCTTCCAGTGatacttttttttcatcatgTCACGCATT
TCGGTCGATCACGATTCAATCGAAGATCACGCTGTACACAATGAAGTTCC
CGAATTCATGTCGCTTATCAAACACTATAAAGAGAAGGGTTGTTATCAGG
AAGTCCTTGCAATGAGATACAGATATGGCAAATGCAACCTTTTCCATTTG
ATAGCACGTAAAAGTACTTTACAACTCATCAAAACTTTTTTCGATTACAC
CGAGAGCATTATGGGTAAAAACTTTCTTACTTACGAGCTTAACACGACGG
TTGATCGCAACGGGCGTACATTTTTTATCATTGCAGCCAAGCATCTCCAA
GAAGAAATCTTAATGtatattttaaaagaatataACCTAGATCCAGGTTA
CTATGCTGCCTACAACAAATCGTCCGCTTTCACATATCTCACCAAACGTA
AACTAACCGACTGCATGGTTCGAGCTCTTGCCTTGATTGACCAAACAAAG
TTAAGCGAGGAAGGTTTCAAATGGTTTCTTGATGACATGGAGTTACTTAA
AGATACAATGACCGAGAAAGGGTTAATCGAGGCAAAATGGATGTCAGCTA
TGACCTATAGATTCAAACTGGGTGGGCGAGTTTCCAAAATGCAACCGTTT
CAGGAGTCAACGATTGCGTCATACGGTGGTGACTTACGTGTCCGTCAAAT
CTTACGTCATATATCTACGCAACTTTTCTTCCGTTGGAAATATTACCTTG
GGTATAGTTTGTTAGAAGATGTTCAAATTTTGTACATGATCAAAAAGGCT
GATAGGGAAAACCCAAACCCAAAGCCAATCATATTTGTTGGTTGCACTCC
ACTAGAGGTATGATTATTTGCAGTATTCAGAGTCACAGAGacactatttt
tttattttaataatggCACTTGATTATTCTTAACGACGGCATTTGCCGcc
aaaaaattggctttcaaNTTGATACGTGCCCACCCCCGGAGAGGGGGGCA
CTTGATTATTCTTAACGACGGCATTTGCCGccaaaaaattggctttcaaa
atcggtGCCCTTTATTGAACTTTTCTGACCCTCGCAGTGTAGTTTGATAT
CATGTCTTACTATTTTGCTAAAGCTAGAGTCTGGAATTTATTTTCCATTG
TCCCCAAAAACAAGCCCTTAGAGTGCATGAAGCTAATATGACATAATGTG
ATataacccttacagtgcacccTTACTTACAGTGCATTACAAGGGTCTTG
AAAAACCAACCAACCCTTCAGGACGGtacatgccgtgggtcggaccatGT
GAGTAAATAGTAACCGatcactttttattttcttatttcgaAAGGTTGGC
GAGTACATAAAGGAAGATTACAAAACTCGATCGTTACGTGAAATATTGAC
CAAAGAATACGACTGTCACCAACACGATGAAGAAGGTACTTCCCCTCCTG
TCTTTAAAGTTCTGATAGGCCATGATTCTAATACATCAAGAACAATCGTA
GGACTGATCGCACACTCTAATTATGATTTcctcttcaaaattttcaaatg
attgaAGTGATATAAAGTCGTTATTAGTTCTCATATTCATATTCATTGCG
ATCGGTAAACTTCTTGTCGCCTGAATAGAATAACATTATCCACGGAGAAA
CTTTTGAACTTCTGACACAAATCTAATTAAAGAATATACTTACGAGTAGt
tatgaaaaattcaataaacttttgtCCAAGAGACTTCACCCAGGGTATAA
TACTAAGACTCATTCAATGTTTTATTCATTAGGTGATAAACGGTCCCGAC
GATTTGCTGCTAAAATTCGTTCAAGATGCTGGGGTTCAAAAGTCAAACGT
CAAACACGTGAGTCGCGTGATATTATCAACCTTCTACACGTGGATAAGAA
GAAATGTCAGAAAGTGGTCAAGCTGAAAACCAAAGTCAAGCTCCCTTACC
TGGATCTAACCGAAAATGGTTTCTATTTGATCATACCGGGCGGGAATTAC
CTGAATACAAATATCCATGCGGAAGAATCCTTATGTGACGTATCAAGCTA
TCTCTACAACGCTTGGGATCACAAATCAGTCATCTACGGTAAAAACCGGC
CTTGTATATCATGTTGCGGCCGCTTGAAATCAGAAGCAGTCGATGAGTAC
AATAAAAAGCATGGCTTCCTGTATACCCATACTATTGAGTACCAAGAGGA
TGACGCTAGACTGCAAACCTTATCTCTCCTATACACTTCTCCTTCATTTA
TAACTAAGAAGCCACCACCGAAGCTACNAGATGACGCTAGACTGCAAACC
TTGTCTCTCCTATACACTTCTCCTTCATTTATAACCAAGAAGCCACCACC
GAAGCTACAAGATGGTGAAGAAGTTATGGAGTATAAGAAAGATGGTAGCA
ATGTTGGTCATGTTGAGGGGAATGTGGATGAGTTTGAAGATTTCGTGAAA
GGTTATGATACTGCAAGTGACTCCGAAGCTGAATGATCGTTTGGTTGGGA
ttggttttaaaagttttttaatctTAATCTGGACATTTTAACAATACATC
AAAACTAGCGAGGTTATGCAAGAAGCTATCTACGGCAAACACGAAATCTA
TGGCGTGAGTTTTTTGCAGACTAGCGTCCAAACCACAAAGATAGCTCTGT
ATCCAGTCTAAAACCCTACGGCATAGATTCTATACGTCATAGATAGccag
accatgttcgcacgtgacggttccgtttcgctccgaaacaaaatgaagcc
attttaTTGGTTACATttaagttttacgtcacttctaaccaatagaacgA
CTTCATTCCGTTTCGGAGCAAAACGGAACCGTcgcgtgcgaacatggtct
taacCTCACACTTTTCCCATCACAGGGTAAAGATACTTAATAGGGACTGC
CAATCCCCGTTCATTGGgtgattttttctatttgacTTTCAAAAGAAAGT
CTCAGTGAATAGTGCCAAACAGTATCTTTCCAGCGTCTGGCACAAAGCCT
GGTACAGCCTATACCCTGTGAATAGCGGTTGAATCTTCAGTACTGAAGGA
GCTTTTTATATAGATATCAAAGAATTAGACAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047426TCONS_00047426Clytia hemisphaericatranscript
TCONS_00047427TCONS_00047427Clytia hemisphaericatranscript
TCONS_00047428TCONS_00047428Clytia hemisphaericatranscript
TCONS_00047429TCONS_00047429Clytia hemisphaericatranscript
TCONS_00047430TCONS_00047430Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047430-proteinTCONS_00047430-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:35107..43938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36	0.4	0.16	0.42	0.7	0.61	7.36	7.83	4.54	3.06	4.4	1.68	4.84	3.27	5.15	14.67	5.09	4.67	4.69	3.3	2.43	2.77	5.11	4.94	7.77	10.75	0.76	0.27	0.27	0.37