TCONS_00047426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047426
Unique NameTCONS_00047426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047426 ID=TCONS_00047426|Name=TCONS_00047426|organism=Clytia hemisphaerica|type=transcript|length=1560bp
ATGGATTTAGttcagaaaatatatagttTACTTCGAGTTGTCAAGGACGT
TGAAACTAATGGAATAATGAGATGGAGTTATTCTCTAGAAGATTTAGAAG
TTTCCAAACGCCATCCAAAGATGTTGAGGTTACTGCTCACATTGACAGTC
TTTTCAACATGGAATATGTTGGAGGTGTTTGGTGAAGGTGAACAATCTCC
TCCTGTCGTTCAACAATCAACAAATATGTTCAACAACTTGACGTTAGAGA
CTTTCGAACAGTCAACAAAAGAGAAAGATATAATGTTGGTTCTCTTCTTT
GTACCATGGTGTCCACATTCTAAAGCGATCCAACCAGAATGGGAGAAAGC
ATCAAATGTACTTGAACAACAAAAGGAATATGTTCTTGGTCGAGTCAATT
GTGAAGATAGTGGGAAAACACTTTGTGAAAAATATGACGTCAAAAAATAT
CCGACAGTTAAGTTATTCCGACATGGACAGTTCCAAGAAGATTTTGATGG
CAGAAATGCAGATTCATTAATCGATTTCGTACAAAGAGCACAATCAACAA
ACGGACCTGTTGGAACGACACCAACGCCACCCTCTACTTCAACCACACAA
TCACCGCCACAGCAAACAGGGGCGTCTCTGGTGAACAGTGAGCAACAAAC
ACAACAACAGCCACAAGCACAAGTTGTCACTCAATACCAATCAGCAGGTG
AAAACGTGAACAGCCAACAGCAGCAAGTTTCAGCGCCTGTTGTACAAACA
CAAAACCAACCCCAAATTGCAGAAAATGCACCCGTAAATCCGCCCTCGAA
TCCGCCATCTAATACTCCAGCGGGCGGAAATTCAATTCAAGGATTTCAAT
CCGAAAataaactttcacaacaaaaagCAGGACCAAGTCTAATGTCTTTA
TATGAATCCGTCTCTAAAACTAAAGGTGGGCCTCACCCTTTATACCCACA
AACATTCCATTCACAAGGCCCCGTTGGAACAGCTCCGGCCTCAATAAGCC
AAGAACCTTTTATACCAAAGCGAGATGCTGCCATTATGAATTACGTCATG
AACCGACATGAAGAAATAAAACAATCACCGGGCGATTATCAGAGATTGGT
AACTTCGAAAGATGTTGATCAAATGAAGAAATAAAACAATCACCGGGCGA
TTATCAGAGATTGGTAACTTCGAAAGATGTTGATCAAATTAAGAAATATT
ACGAATGGAAATTCAAACAACTGTCCTTACcagagaaagaaaaacaaaaa
cgtaTTGAACTTGGTTCTATGTTACTGGGAGATAAACGCGCAAAAGACTA
AACGCAAGCTGTACTAATACATTTTTCCATCTCCAATGATAACACAATGA
CGAAAGCTGAACATTTCTAGGACAACCTGAACAAAAATACGTTGTGAAAG
GTGTGGTTTTTGAATTGGAATGATTTCAGAATTAATACGGCCTTAATCTT
TTTATATTGATAGGACTTTTCATAAGTTATTTTGAGTTCAAACGACTGCc
ttgttttgaaacaattatcaaggtgattaaatccctGGAGTCTTCAAGTg
cgattttttt
Run BLAST on NCBI

transcript from alignment at scaffold_128:35107..40002+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047426 ID=TCONS_00047426|Name=TCONS_00047426|organism=Clytia hemisphaerica|type=transcript|length=4896bp|location=Sequence derived from alignment at scaffold_128:35107..40002+ (Clytia hemisphaerica)
ATGGATTTAGttcagaaaatatatagttTACTTCGAGTTGTCAAGGACGT
TGAAACTAATGGAATAATGAGATGGAGGTCAGTggtctaaatttttgaaa
gccTGTCTCAAAACTAGTTTATTGCATTCTGAAGCTGAAGGCAGAATTAA
CCAAATATCAAATGTTTGGAGATTAATAACCGCTNTATTTTGAAGCTGAA
GGCAGAATTAACCAAATATCAAATGTTTGGAGATTGATAACCGCTTGTAA
TGTTTTAACATTCTGAAACCTTACTGTAAAGTTATTCTCTAGAAGATTTA
GAAGTTTCCAAACGCCATCCAAAGATGTTGAGGTTACTGCTCACATTGAC
AGTCTTTTCAACATGGAATATGTTGGAGGTGTTTGGTGAAGGTGAACAAT
CTCCTCCTGTCGTTCAACAATCAACAAATATGTTCAACAACTTGACGTTA
GAGACTTTCGAACAGTCAACAAAAGAGAAAGATATAATGTTGGTTCTCTT
CTTTGTACCATGGTGAGTCATCGAccgtttagatttttttaatctACTCC
cagtggaggtcctataaataaACTGATGTTCGTTCGTCTTCAGAAATCTC
CATTTTtccagattttcattggactttttccttatatttctttgttattt
attttcacagaaaaacattattgataacaatgctcaccatcaagcatgtt
tcaattgataataaactgatttttgcaaccggaactttctatctattttt
tccttacaaccctttcctctccccccatcaacaatcaatgatgaaattta
atgcgcTATGCATTTTTGCTAAACGCTTTATTTACTGActggttgttttc
atttttctccttattgctatctaactttcatcatcaggtaggtccattca
gcaccTAGCTTGTTTAATCTACTCCCAGGTGTTTTAAGCAATAAGAGCAC
CCTCCCTGTTTGTTAATGTTATTTTTGAGGGGGTTTTTAGAAGTACAAAT
TCTGTCCTGTAGCCCTCCTGTTTGTCTTAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCATAGCttttctagatcgaaaataatcga
gggtggtagattctacccccccctggggatacaaaagtcaaaaaagcttg
gggctaatagggttaatacGGTTCTTTCTTTCCCAGACAGGACAGATCCC
ATTGAGGATGGTTCTGCACTATAATGCTATTAGTAATTAAGTAATTTAAT
CAAACATGCACTCGCTTCCTTGACTAgtgataaacaaaaaatttccattt
cgttcatttatttcaaatataGGTGTCCACATTCTAAAGCGATCCAACCA
GAATGGGAGAAAGCATCAAATGTACTTGAACAACAAAAGGAATATGTTCT
TGGTCGAGTCAATTGTGAAGATAGTGGGAAAACACTTTGTGAAAAATATG
ACGTCAAAAAATATCCGACAGTTAAGTTATTCCGACATGGACAGTTCCAA
GAAGATTTTGATGGCAGAAATGCAGGTTTgatgcttttttttataagaac
atgtaaATTTTGTTTAAGGCTCGGCTGTTCTCATTTTCACGAAGGGAGCT
CTCAAAATCATCCCCAATCCCTTATTAGTAATTtttgaggctcagattgt
tatCATTTTGTTCTTAGGGTTAGACCAGATTTACCTAAAGAAATCATGAA
GTTGGTCTCACAAAAACTAATGAATACAGATTTTAATTTGCTtggagttg
aaaaatttcaaaattggttgAGCTTGCGTCCATGAACAAATGGGTCTTTC
TTGAATTTTGGCCTTTTGGTTTCGATAGATAATAGCTTTTATTGACTTTT
TTGTtgagttacacgttttttttttaataaggaacacgtttataaggaac
tcgaggctgaaaatggtccaaaaaataaggaattgttaaggaactgctca
ggctgagaataagaaaactagttttaaggaatccaatttttgcgaatcca
aacttagcagctatgtaaataaggaactcgataaggaactttgaggctga
aattctctgtaaaaataaggaactccaggctcagagcaaagttaaggttc
cttataaaaaaaaaacgtgtaattggtTTTCACCCTGTCTCTTTTTCCTA
TTAGTACTTTTTGTAAATCTAGGAAACTAATTTCGGTGGGAACTTCTTTT
GGCGGGCAGCAAAAATCctgaaaagaatttaaattttgtGGAATAATTTC
AGCGAATAGCAGGGTAAATTGGTTCATTTTTGCCTGTAAAATGAATCCGT
taggcaaaaattaagttttattttAGAAAACGATGAAAAATCTAGTTTCG
GCGAGGAACTTACTTTGCTAAGggagtaatttttttattttagcgataac
taattttgaaGAATGAGTTGCCTTAAAGATAAATTTAATgagataaaaaa
atctttcagaaGTTTTTGATTTCTTCAGATTCATTAATCGATTTCGTACA
AAGAGCACAATCAACAAACGGACCTGTTGGAACGACACCAACGCCACCCT
CTACTTCAACCACACAATCACCGCCACAGCAAACAGGGGCGTCTCTGGTG
AACAGTGAGCAACAAACACAACAACAGCCACAAGCACAAGTTGTCACTCA
ATACCAATCAGCAGGTGGTGGGTTACTTACTCatacgtcaaaacaacgtt
tatttaacagcctaggctacgtcatatatcttccttcgtttcaaaaacta
aaaaagccTGGAGCTATCTTTGTATAGATTATTAACAGCCATAATATTCA
TAGATTTTAGGATATACGATATACATTGAAACAGTATTGTTAATCAGTTT
ACCTATAAATAAACTAACAGTTATTTCATCCTATTTTTTCTAGAGACTAT
CACACGGGAAAgcataaagcttttaatgccaATATAATCAGTGTAGTTTT
TCCTGACAGTATTTATTCCTTTACTGCCTTACTGTTAGAAACataaattt
tcctttatttCCTCTCTAGAAAACGTGAACAGCCAACAGCAGCAAGTTTC
AGCGCCTGTTGTACAAACACAAAACCAACCCCAAATTGCAGAAAATGCAC
CCGTAAATCCGCCCTCGAATCCGCCATCTAATACTCCAGCGGGCGGAAAT
TCAATTCAAGGATTTCAATCCGAAAataaactttcacaacaaaaagCAGG
ACCAAGTCTAATGTCTTTATATGAATCCGTCTCTAAAACTAAAGGTGGGC
CTCACCCTTTATACCCACAAACATTCCATTCACAAGGCCCCGTTGGAACA
GCTCCGGCCTCAATAAGCCAAGAACCTTTTATACCAAAGCGAGATGCTGC
CATTATGAATTACGTCATGAACCGACATGAAGAAATAAAACAATCACCGG
GCGATTATCAGAGATTGGTAACTTCGAAAGATGTTGATCAAATCAAGAAA
TATTACGAATGGAAATTCAAACAACTGTCCTTACcagagaaagaaaaaca
aaaacgtaTTGAACTTGGTTCTATGTTACTGGGAGATAAACGCGCAAAAG
ACTAAACGCAAGCTGTACTAATATATTTCTCCATCNTTCAAGGATTTCAA
TCCGAAAataaactttcacaacaaaaagCAGGACCAAGTCTAATGTCTTT
ATATGAATCCGTCTCTAAAACTAAAGGTGGGCCTCACCCTTTATACCCAC
AAACATTCCATTCACAAGGCCCCGTTGGAACAGCTCCGGCCTCAATAAGC
CAAGAACCTTTTATACCAAAGCGAGATGCTGCCATTATGAATTACGTCAT
GAACCGACATGAAGAAATAAAACAATCACCGGGCGATTATCAGAGATTGG
TAACTTCGAAAGATGTTGATCAAATTAAGAAATATTACGAATGGAAATTC
AAACAACTGTCCTTACcagagaaagaaaaacaaaaacgtaTTGAACTTGG
TTCTATGTTACTGGGAGATAAACGCGCAAAAGACTAAACGCAAGCTGTAC
TAATACATTTTTCCATCTCCAATGATAACACAATGACGAAAGCTGAACAT
TTCTAGGACAACCTGAACAAAAATACGTTGTGAAAGGTGTGGTTTTTGAA
TTGGAATGATTTCAGAATTAATACGGCCTTAATCTTTTTATATTGATAGG
ACTTTTCATAAGTTATTTTGAGTTCAAACGACTGCcttgttttgaaacaa
ttatcaaggtgattaaatccctGGAGTCTTCAAGTgcgattttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030209XLOC_030209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047426-exon-scaffold_128-1491911889:35107..35183TCONS_00047426-exon-scaffold_128-1491911889:35107..35183Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:35107..35183TCONS_00047426-exon-scaffold_128-1510915933:35107..35183Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:35107..35183TCONS_00047426-exon-scaffold_128-1575043694:35107..35183Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1491911889:35388..35618TCONS_00047426-exon-scaffold_128-1491911889:35388..35618Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:35388..35618TCONS_00047426-exon-scaffold_128-1510915933:35388..35618Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:35388..35618TCONS_00047426-exon-scaffold_128-1575043694:35388..35618Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1491911889:37079..37281TCONS_00047426-exon-scaffold_128-1491911889:37079..37281Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:37079..37281TCONS_00047426-exon-scaffold_128-1510915933:37079..37281Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:37079..37281TCONS_00047426-exon-scaffold_128-1575043694:37079..37281Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1491911889:38235..38423TCONS_00047426-exon-scaffold_128-1491911889:38235..38423Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:38235..38423TCONS_00047426-exon-scaffold_128-1510915933:38235..38423Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:38235..38423TCONS_00047426-exon-scaffold_128-1575043694:38235..38423Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1491911889:38776..39197TCONS_00047426-exon-scaffold_128-1491911889:38776..39197Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:38776..39197TCONS_00047426-exon-scaffold_128-1510915933:38776..39197Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:38776..39197TCONS_00047426-exon-scaffold_128-1575043694:38776..39197Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1491911889:39565..40002TCONS_00047426-exon-scaffold_128-1491911889:39565..40002Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1510915933:39565..40002TCONS_00047426-exon-scaffold_128-1510915933:39565..40002Clytia hemisphaericaexon
TCONS_00047426-exon-scaffold_128-1575043694:39565..40002TCONS_00047426-exon-scaffold_128-1575043694:39565..40002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:35107..40002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.157653	0	0	0.57162	0.451664	5.31009	5.91442	2.5797	0.796513	0.562064	1.25919	0.109098	0.258494	3.13595	9.83608	3.48654	2.63654	0	0	0.724465	1.04139	0	2.92901	5.71948	6.95072	0.519366	0.183036	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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