XLOC_006278 (gene) - C. hemisphaerica

Overview
NameXLOC_006278
Unique NameXLOC_006278
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000122:462403..473056+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006278 ID=XLOC_006278|Name=XLOC_006278|organism=Clytia hemisphaerica|type=gene|length=10654bp|location=Sequence derived from alignment at sc0000122:462403..473056+ (Clytia hemisphaerica)
GTTTCAGAAACCCGGCATTCCATGTATTTTCATCTCCGGAATAGACCAAT AATCTCCCCCTCAGTTTTTTCTCGCAACTTGGTCTCATTCTCCCATAGTT TGAATTTTTGCTCACCATATTGTAcaagtactcttaggtgccaaataaac gggggggggggNACCAGTTGCTGGAAGAAcaagaaatcaacaaaagatCA AAAGAACTGGCTGCCTCCCTGCAAAGTAAGAATATACCTGCATTTTATTT ATTATCTTAAGTTAGAGtcaactttaaagaaagtaAATCTTTTTCCATCA GAAATGTAAGACCATTCGTCAAAACGTTCAAAATTAATAGCCTTTTTTTA TGTAATGTAGAGAGAAGAAAATTCCTTTGTCAAATAGAACAATCAACTGA CAAAACGCGCATTAAAGTGTTTTAATGATTCGTTTAAAAACTGCAATGTT TTGCGAGATGGGCAGCTTTCTTATGATCGTTTCAGACATCAGACCTTATA CACTGCCAATCTGGCGTTTCAAGGAAGAATCTTTTTAGTGGAATTTTTCG ATTTAGGATTCGAATTGAAAGTGCTAACAGTATACAGGCTCAAATTTTCA TTCTTTGCAACTTTATTTTCCAGGAAGATATCTTCAGACACACAGCGAAC ACCAAGAACTGATAGAGAAATTTAATCAAGTGTTAGGTATCTGATAAAAG ACTGTTTAAATCCAGGTTTCTTTTGAATTGGTAGACAGTATATCCGAAGA CCTTTCTGTTTTACCCAGTTTGAATCTTATGTTTATTTGTTTTCATTGTT AGTTCGTTAGAAATCCCATCCAGTTTATTTCTTTCTTAGATTTCTTTAGT TGAGCTAGAATATGACAATTGACAAGTTCCATGACAATTGACAAGTTCCA GAAGCCTTTTAAACCCTGGTGAAGAGAATGGGCTCCAGTTTACCCGAAGA AAAAGGGAATTCCATTTAGATTCCATTAGCTGCATGTTTGATAGGCCGAA AATgcgaatttaaaaattttgtggcAGATTTAATTTCGCCAAAATGGCAA ATATTtgcgaaatcgcgaaatttaatctcgcgaaagttaGTCCTATAAAA GTAAACTGGGACCCAGTCTTTTTACAGGGCTCATATTGATAAGTGTATTC ATttcaacaataaaatttttcagCGCAACTTTACGAAGCACAACAGCATA TGAACATCGAACAACTAGACAAGTCAATGAGCTATCAATCCTTAGAATCC GCGCGGCGATTGGCGGACGAAATGAAGCAACAAGCGTCCGATTATGCAAA GGAGGCAGGACATGGTAGAGGTTTGTGTCCGGAAGAACTATCTTGTTGTA TCGGctgtttgtttctttttattctttgtcTCGGAAAGCTACGAAGGCAA TTTCTACCACTATTTggatatttttattaattttgaatgTTACAAATATT AAATGGAGTGTGAATAAAAAGTACATGAAGAGCCGTCTTAATTTTTGATC GGTCCTTCAATGAAGTTGATTGTCTTCTTCAACCTTCTTTACAGTCACAA ATAATAGCCTTCACGAGGAAAACGAAACTCTACAAATGAAGATTGCAAGA CTGGAAAATGAATGTAAACTGTAAGTCGGGTTTAATTtgtattattatcc atatagcggtcattaagtaagccattaaagattcgaacggcgggtggtat tgaaaggttctatgactcaaatagtcataccagcgctgagaaaactaagg cgtcgtgcttcagagggctgaaatatcattaaccgccctggttatagagc gataacgtcatttgcggcccgctcggaactttattgaagtcgttgcattg aagcggtgagactaaaccgacgtcagaaaaaaacacttttttgtcatttg aggcccgctcgcaagggtactcaaaacttgttgaagtcattgcattggaG CGAAAATACTtggctgacgctagaaaaaaaacgttgtttgaatttttgat acggataataatagtaatagcgttaagttttcgttcgttgttgtcattaa ttctgcccttgcagtttgattattagccctctagtgccatttgcACCCTC CGCTTCgcgaaaataacaacaacgacctcaaactgaacgccaTTGTTATA TTAATTGGCAACATATGGTTGATGAAATATTTTGGCGTTTTTCATTACCC GACCGAGCGAATTCATATcaagtaaaattgaaaaaaaatgagatcgggta gctcagtcggtagagcattcgccttataatctaagggttgtgggttcgat ccccggtcaccgccaactcagcggatgagtagcttagattgggtaatctg atctaggcggtaagttactgggNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgatctcccaggt ctagcgcaaatagaaaaggggatagactccctcactcccggctccgccga cagccaccagatgaatatacttacttacttactactgAAAAAAAAATGGT TCAAACACCGAAAAGCTCCGGGAAAATGAATTCAATCatgaaattttaag ttttgttttaaaCCTATGTTTTTATCTTTCTCGAATCTCTCTCTTCATAG ATTGAGGCAAGAAAATCAATTACTGTCAAAAGCTCAACCTTCCTCAAGGC CATCATGCGTAAGTCTTTTCACATACTTACAGATTTGCTtctacttttga aatatttttggaatacttataaaattttacttttaagtTACAATTGAGAG CGTTCTCTAATCCGACGTTCTCTTATTCTACGCGTTCCATTATTCGATGG TATTGAAAGCCATCGTGAACGAgaaactctctaattcgatagtaattcga tacgctccattgggctattccagaaaaaaatgaatatatgGGGGGGTGGA GGAATTGAAATCGactgttttttcgtttttttgtgaTTCGTTCTTTCAAA TAGCACTTCTTCACGCATTTTCCTCTTTTGCAGTCTCCTTCACCGCAACG TCACAGATTCGAATCCAATACAAGTACAGTGAGTGTAAACAATTTTTTGG TTTATAACTTCTTATCAAAGCATGAGCATATCTTAAGTCCGtttgcttta agtgtgcactattTTGCTTGCCATCttcaatcaattttaattctaacata ttatataccgaaTATCAAAGCGAATTTATGGTACTTGAAGAAGTTGTTAT TTTTACGTTAtgtaagggaagaaattttcgcggaatttaagtTCGCGGTT GAGGGaactttttgtttacaattccaaaaagaccaattttagggtgattt tttaaatcctgagaataATCATgtttcgtggaatttaatttcgcggattc gTCAAAGaactgcgaaattaaattctgcgaaaatttcttcccttaaggta tgcaAAATCTTGATGTAGTCGTTTATTGAAAGCCGTGTATTTAAAAAGAT CTCGAGCAAGCTTCGAAATTCTTACACACTGTTTGTGCTGAGAGGGGTTA AAAGGAACTTCAAGAAGGAGAAAGCTTCATGAAAAATTACAACTACTATA CTGTTGCCATTTTCAACACGACAAGTCAGTTTACCAAtatgtttcttttt caaatgaaTTCACTTTTCTTTACAGCATGGAGATGATGAAAACACGACAT CTACCAGCAATAGTATTACTGTAAGTCTCTTCATTGACATCGCTGGTTTT CATTTCTATATACAATTTTCGTAGACATTGTACATGTTATTCTTCTCACG CATACACACCTCGACATATCTTCGATTCTTTTGCACGTCTTAAGCccggt ctccacttgcgcgcgctgcgatcaaACTCTATCTAGCAAAGCtcccacgc tattggtcaaaagaaaaatgaagcaattccattggcgcgatctgacgcaA CGGTCGAAAAAAGTTAAAAcgtattcaacttttttttcgagcgctcGCTA Cattttcatgatgtaatcttttttccaggcaaaaaggattgaagccaaac gGTGTGGTCGCAGCGCGCGttagtggagaccggcctttactcTTGATTTA TACCTACCATAAAGTGGCAATTTACTCAATTGttttaaatatcaaaaaat ttgagaTAGAAATTATGTTTTAGAATTGTGGTTCTTATTGATTTCAGCGT GCTTTATACCTGTAGTGTTTCTCTTGTCTTGAGGCCTTCATTTTAGGATA GCTTGGATGCTTGTTACCCTTTCTCTTGCAATTCAACATCTCATTGGGTT CCCAGCTAGAAGTAACCacaattttaaaatataattgctAAACTCTTGAA TGACTGCTAATAATTTGGTAGtctttttaaaactgtttttattatattta tgtGATATTATTAAATGTTTGAAATAAAGCTATAAGTTAATAATTCACGC ACTAAACGATAAACagattaaataaatttttaatattaaaGTAGTGAACG TAACTTATAATAACATGGTCGGATTgcttgaatgaatgaatgaaagaacg aatgaatgaatgaatgaatgaatgaatgagtggTTGGTTGGTTGCGTGAA TCGCTAAAATACGATTAAAATGTCGCGGATAGTATAAGATTAAACGATAA AGCGCTTCATAATCATTCCATCGAAAAGCATCTTGGCTATCTTAATATGT TGGCAAGAGAAACACTACCAGGTAACCTTGCTAAGATTTTTGTTCAAATC TTTTCATTGCTTTTATTTATGTtgtgtacagggtgtcccgtaAAATGTCC TGTGTCAGAACACGActacaaataaaaaaataatcaactaCACAAATGTT TCCAACTTGTAGTCAAATTTTGATACAACACTCTTTTTCAGGACACCCTG TAAAATTCTTGTGctatattttcagatttttttgtccTTTAGGGTCGGCG CAAAATCTGAGAATttgcaaaaactaaaacttgGTATAATTTATTTCCCC CCCTGTAGATTGATGAGaattgttctgtaaaatacaacgaTTGGGTGGAC TGGCTGGTTATTGAAGCATTCTGATCCAAGTCGAAATGAATTCTGCCAGC ATCATAGTGGCTAACAATCTGAAATTTCAAATCTTATCACTCCAACGATG TTAATTGgtcttgaaaaatatatttcttggAATGCGTTCGATTAAACTGT GTGGATGGTTTGTATTTAATGTGAAAGCCTACTTTGCTTGATTAATTGTA GTTTATGTTTCGTGTTATTTGGTTTTTGGTGTTGCGTATTATCTAACTGT TAATTATACAAAAtgtgttatttttttattgaatttcaattaatttaatt tttagagAGTACacactttatttttttaatgaattaattttttcttaatt attaatcgaaaaatatttttatacatcaatcatatcatatcatattcTCG TATACGTTCAAACTTTCATCTTGCACTGTTGTTTCTTTCTAGCGGAAAAA CCTTCTATCTCATTTTCTATCTCATTCAATGTGTCACCCTCtcttgacgt caatgcaatgacttctttcgtTCTTAAATAAGTATTTATCTTTGATAATC CAGCCGGactagaatatttcaaaagtaaaacatAACCCAAAAATAATCAT CTCCTTGGATTTCAAATAAGAATAATACGTTAAGGGAAGGGAATACGTTC GGTGTTACAGAATTATTTCGATGTGTCTTATGCTATCGTATCATTTTAAc ccaaatttcattttcaattggTTATGGGTTGTGTTgagttatgtttttat tttatacttttCTGCCCACTTTCTGCCCACATTTTTCTCACTCTTGAAAT TATAATTTGCAGGACATTCAAGTAGAAAGAACCATAATTGCAACAAGAGT GCTTTACACACGTTCATTTTGTTGGTCGACTTGAAAATTCTCTGAGCAAT CtcaaacaccccccccccctgcaattttttaaaaagctgtGAACTTTTTG GCAGTTTTTGGCTAGCTATTTTATCTGAAAGATTttgtttcagccaaaaa atGGGTGGGTGTTAAGCATCTTACAGacacgtcatcaaattttgacgtca aatatttttttcattacaTTGCACTTCTTTCTTTCTCGTTTTCACTATAC GCAACCTTTTTGCTAATATATCTACTTATCTACAACACGCAGTTCTTCTT TACCCATAACCTCATATTTACTGCTTACTGGCGAGATGTGTTTCAAAAAT CCTAGTGTTAGTTTTGTAACTTTTTctacttttatcaattttactAAAAA CATTATACACAATAAGgagaaaatataaataatattTGTTAGTTTCCTTT ACCTTTTGATCAATCCAAACCAATCCTTTAGAAGATGAAAATTTCTTCGC TCAGTGAAATATACAGTGAAATAAACGAATAAACAGAATCACTCAAAAAA TTGAGCGAAATATCGAGAAAGAAAGAACTACCTAATAATTGCTACACTAT GCTGGCGCAATCTCCAGGCAATGCAGTGTATTGTAGATTTTATtcaaata ccttaagggaagaaattttcgccggacaaattttcgcggtttttttgACA GATCcgtgaaattaaatttcgcCGAACACGAATATTCTCAGGATTTAGTA AATCACTTCTACAATTGTTCTTTTTATGGCAAAAAATTCtaaccgcgaaa gtttctttctCCGAGAAATTCTTCCCTTAGGGTAAAATAATTGTAAatta gttctttatttctcgATACTTGAAGTATGACAGCCCATTTCGCatattga aattaattttctttcttctatCTAGCCTGAAGAACTTCAAGAACAATTGA AGCTAGCAGAGGAGTCGTTAGAGAAATTGACCACTGAGCGAACAGATACG ATCGAACGTTTCACGCAGAGACAACAGCAATTGGTACGTACTTTCGTTTT GTGAATACAGTGGAGTTTCTGCGACTCGAGCACGCACggggaacgcaaat ttgttcgagtaatggagtaagatttataaggcattgttaacttaaGGGAC TGGAAAACTGGCCAATGATGTCACTTTCAATGGCAACAGGTGGTCACACC GGGTCACACTTCACAAACTTTGATCTTCTATCTACAAGGAGCAATAATCA AACATAAAATCCCTTGACACTTCTGCACATTGGAGTCCTTTTGGGGACAA AAAGCAGAGACCCCACTCGGCATGTTTTTCATGATTTTCATGATTTTTGC AAATTTGGCATTTTTCATGGTTTTTAGCATGTTTTGGATCATTTTGGCAT GTTTTTCAGAGAAACATTAGGgaattttgtttatattgtcTCTTCTCTGT CCTGATATTCAGATTCGTTAAAGATAGCTCAAAATAGCACTTTCAGCCcc caaaattctaaaattttctcacttgcccaaccatggtgggcaacgttaaa tattattttaagttttcaataaATACCATTGACAGGAATGTTAAAACAAG GATGTGTCAGGCAGGGGGGATCCATCTTTTCCAATGCTTAATAGGGAGGT AGGagatttccagaaaaaaattgggggtggaagattttaggggggggggg ggcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNggggggggggggtcaaggaAAAATTAGGGGGGTAACa acttttggtcaaaatatctatcaggcgagaccaatttaatttgttgttct aagggcagatcgttagcaaaatatgggtcggtcggtcggtaaaataagaa tatatttttcatttatcaggatTGGTAAAGTaccaaaaatgttttccaaa atatatctggttcaaaaattcactttttttatctccgatgaagatcataa taaaatcttagtgtacggaatgcttgattttctaaattttttaatttctt gaattaattttcagctttattcaaatttgatacTTACacataactagtgt gtaaaatatattgtagtggaaattcaatattattattttcttgattttag caaaaatagggtcggtcgggcccgtaggacaacaaattaaattggtcttg cCTCATATTTATATTGTTTTAGATATTTGGTATGGGACAACTAAAAAACA AGTGTAGATAGCTAAATCTTTGCCTGGGGCACCATGTTAAACtctttttt tcatataatttttgatacaaatttcaatgttttcggTTTTGAATGACTGG TGGACTGCTGCTGGCAATAGCAcgggttcgaaattttttttaaatagggg ATACACATATAGCTTTATAAAACTCTACTTTATAAAACAAGTAGCCAATA TTTGGATAACTTTTGTCAAGACTACATGTCACTGAACCGCCTCATTATTC TTTCAGGGTTTAGACAGGTCCATGACCTCGGCAAAACAGGGTTTTTTTTA AGCAccaatttttaaaatgtctcTTGCATTATAGCTTGTATTTTAGTGTC TGGATATAcatgatttttaaatatttctcctTTGGGGCCAACCTTGGTTT TTTCAGGAACAGGGCTCCCTAAGCTAAAATTTGCTTTATGTATGTACATT TTTCTGACTCTTAGTTATATTGTTCCTACATTTCAATCAGTTATTTTCTA GTTTTCCActcttgaaaagacacttttatGGCATCTTGAAAATCATAAAC TTTTCCTATTgtccaaccatggtgggctacATTTTAAATTGCAGCCTTTG ATTGATTAATACATTCCAAGTGAAATGATTTCTACTTATGTTTGTGATAT TTATTAGATTATATATCGATTTCTCATCATGTCTACATCACTGTTTTTAG GTACGGGAAACACGGGGACTTAGTTGATTAATAACTCTACTTTTTggcat gtttttcatgtttttccatttaaaattagcaTTATTTAGCATTCTTTTCT GctctttttggcattttttcatgcatgttttttcaaaaatgccagTGGGA TCTCTGAAAAAGTAGCTACATTTGTCACCATATCTAAGAATCtcgaatga aaatgaaatgaaaacctaagacccgatgatgggagaagaatctcttgATC CGTAATCTCGtaatccaagccacgataaacttccaatatgaagtCTAAGA ATGACTAAACTGAAAACGAAACAAGAGTCAAGGTATAGGTGGAAAATTCA GAATATTAAAATTCAGTCAGCATTTCAAAATTGTTACAATCGGTTTGCCT AAATGGGTTCTTCAAGAAAATATCGGTTCATGGGGAGTAGAGGAtaaatt gattttcaatgtTCTACTCCTGGATATTTCGCTATATCTCCCGGGTGCGT GTTTCGACcatgaaaaaaacattaaatcgacaccatggacatggcagttt ttcacAACTTTTTCAATACCAATGGACTCTAGTGTTACCGCAAAACGTTC ATTGAAtttcttctttcatttcttttgcAGATGAATTTCATTACAACCAT ACTGCTTTTCATGATGATCTTTTTCGTGATGATTTTACTTGGACTCATTG ACGTATCACCCGGGGCTCTCCCTCTCCTTGATGAGCACTCATGGAATGAA TTTCTTGAACATCTATTCTAAAATCAATCGAGAGGAAGAGCAGTTTTGGA AGTTTTTAAAACGACGAGCGCCATATTCAAAGGAAGCGAGAGTCTGTCAA GTCATTTGGCCCCACATGTTGTCTATCCATGCAGGGAATGCTGGGATATT TGGAAATGTCATGGATGGTTTTTATGATAGAAGAAAGTCAGAATTATCAA TCAGTCTTAGTTGTACGGGttttaaaatgataaatatacaAAAGAAGACG AattaaaaaagatataaaattaTAGGCTCACTCTTTTGGAACACAAANAT AATTTTTTGTGACAATTATTtctagaaatttatgaaatttcaaTTTGACG TGAGTTGTGAGTAGATAGCAGTTTTTGACCACATGCAAATGGTTTTATCC GTGAAAATTATATCTTGTGCGTCTACCATAGATTGACATGTGTATAGGAG CCCCCAGCGGTAAGTCtaatcacgatatcacgcattttctttgtcttcaa taaacagcaaaaaaattggataatcatgcatccctttgaaaaagtctaaA TCACGCattatggctcaaattttttcaaatcacgatcaacgttttgacct ctgatcacgcaatcacgaaaaaaaaaaatccaaatcacgtaatctcGCTA GAAAAAAGTCctcatcacgccatcacgaaaactgCTTGGGGGGCTCGTAT AGGGACCTAACTTTGTAATGACCGAAACATTGAGGAccaaaactttttac tttttgagtAATATTTATTTAGATTTAGTTTAGATGTATATCATTATATG TTATGTTATTCCCTTGGTTTTCAGTTTGtgctttctttatttttgaacat aTTTGAATTTTAACCAGTTTTTTTCAGCGACTCGTTTCCTTTCGAAGTTT CCTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011211TCONS_00011211Clytia hemisphaericatranscript
TCONS_00011212TCONS_00011212Clytia hemisphaericatranscript
TCONS_00011213TCONS_00011213Clytia hemisphaericatranscript
TCONS_00011214TCONS_00011214Clytia hemisphaericatranscript
TCONS_00011215TCONS_00011215Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011213-proteinTCONS_00011213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:462403..473056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.87 51.13 70.66 65.48 43.31 34.99 52.96 57.35 44.35 45.82 32.17 35.73 25.12 24.9 23.05 25.12 33.11 28.86 19.9 28.75 23.18 21.74 27.08 27.96 66.18 60.75 24.79 20.17 22.82 21.44