TCONS_00011211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011211
Unique NameTCONS_00011211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011211 ID=TCONS_00011211|Name=TCONS_00011211|organism=Clytia hemisphaerica|type=transcript|length=1196bp
GTTTCAGAAACCCGGCATTCCATGTATTTTCATCTCCGGAATAGACCAAT
AATCTCCCCCTCAGTTTTTTCTCGCAACTTGGTCTCATTCTCCCATAGTT
TGAATTTTTGCTCACCATATTGTAcaagtactcttaggtgccaaataaac
gggggggggggNACCAGTTGCTGGAAGAAcaagaaatcaacaaaagatCA
AAAGAACTGGCTGCCTCCCTGCAAACGCAACTTTACGAAGCACAACAGCA
TATGAACATCGAACAACTAGACAAGTCAATGAGCTATCAATCCTTAGAAT
CCGCGCGGCGATTGGCGGACGAAATGAAGCAACAAGCGTCCGATTATGCA
AAGGAGGCAGGACATGGTAGAGTCACAAATAATAGCCTTCACGAGGAAAA
CGAAACTCTACAAATGAAGATTGCAAGACTGGAAAATGAATGTAAACTAT
TGAGGCAAGAAAATCAATTACTGTCAAAAGCTCAACCTTCCTCAAGGCCA
TCATGCTCTCCTTCACCGCAACGTCACAGATTCGAATCCAATACAAGTAC
ACATGGAGATGATGAAAACACGACATCTACCAGCAATAGTATTACTATTG
ATGAGaattgttctgtaaaatacaacgaTTGGGTGGACTGGCTGGTTATT
GAAGCATTCTGATCCAAGTCGAAATGAATTCTGCCAGCATCATAGTGGCT
AACAATCTGAAATTTCAAATCTTATCACTCCAACGATGTTAATTGgtctt
gaaaaatatatttcttggAATGCGTTCGATTAAACTGTGTGGATGGTTTG
TATTTAATGTGAAAGCCTACTTTGCTTGATTAATTGTAGTTTATGTTTCG
TGTTATTTGGTTTTTGGTGTTGCGTATTATCTAACTGTTAATTATACAAA
AtgtgttatttttttattgaatttcaattaatttaatttttagagAGTAC
acactttatttttttaatgaattaattttttcttaattattaatcgaaaa
atatttttatacatcaatcatatcatatcatattcTCGTATACGTTCAAA
CTTTCATCTTGCACTGTTGTTTCTTTCTAGCGGAAAAACCTTCTATCTCA
TTTTCTATCTCATTCAATGTGTCACCCTCtcttgacgtcaatgcaatgac
ttctttcgtTCTTAAATAAGTATTTATCTTTGATAATCCAGCCGGa
Run BLAST on NCBI

transcript from alignment at sc0000122:462403..468110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011211 ID=TCONS_00011211|Name=TCONS_00011211|organism=Clytia hemisphaerica|type=transcript|length=5708bp|location=Sequence derived from alignment at sc0000122:462403..468110+ (Clytia hemisphaerica)
GTTTCAGAAACCCGGCATTCCATGTATTTTCATCTCCGGAATAGACCAAT
AATCTCCCCCTCAGTTTTTTCTCGCAACTTGGTCTCATTCTCCCATAGTT
TGAATTTTTGCTCACCATATTGTAcaagtactcttaggtgccaaataaac
gggggggggggNACCAGTTGCTGGAAGAAcaagaaatcaacaaaagatCA
AAAGAACTGGCTGCCTCCCTGCAAAGTAAGAATATACCTGCATTTTATTT
ATTATCTTAAGTTAGAGtcaactttaaagaaagtaAATCTTTTTCCATCA
GAAATGTAAGACCATTCGTCAAAACGTTCAAAATTAATAGCCTTTTTTTA
TGTAATGTAGAGAGAAGAAAATTCCTTTGTCAAATAGAACAATCAACTGA
CAAAACGCGCATTAAAGTGTTTTAATGATTCGTTTAAAAACTGCAATGTT
TTGCGAGATGGGCAGCTTTCTTATGATCGTTTCAGACATCAGACCTTATA
CACTGCCAATCTGGCGTTTCAAGGAAGAATCTTTTTAGTGGAATTTTTCG
ATTTAGGATTCGAATTGAAAGTGCTAACAGTATACAGGCTCAAATTTTCA
TTCTTTGCAACTTTATTTTCCAGGAAGATATCTTCAGACACACAGCGAAC
ACCAAGAACTGATAGAGAAATTTAATCAAGTGTTAGGTATCTGATAAAAG
ACTGTTTAAATCCAGGTTTCTTTTGAATTGGTAGACAGTATATCCGAAGA
CCTTTCTGTTTTACCCAGTTTGAATCTTATGTTTATTTGTTTTCATTGTT
AGTTCGTTAGAAATCCCATCCAGTTTATTTCTTTCTTAGATTTCTTTAGT
TGAGCTAGAATATGACAATTGACAAGTTCCATGACAATTGACAAGTTCCA
GAAGCCTTTTAAACCCTGGTGAAGAGAATGGGCTCCAGTTTACCCGAAGA
AAAAGGGAATTCCATTTAGATTCCATTAGCTGCATGTTTGATAGGCCGAA
AATgcgaatttaaaaattttgtggcAGATTTAATTTCGCCAAAATGGCAA
ATATTtgcgaaatcgcgaaatttaatctcgcgaaagttaGTCCTATAAAA
GTAAACTGGGACCCAGTCTTTTTACAGGGCTCATATTGATAAGTGTATTC
ATttcaacaataaaatttttcagCGCAACTTTACGAAGCACAACAGCATA
TGAACATCGAACAACTAGACAAGTCAATGAGCTATCAATCCTTAGAATCC
GCGCGGCGATTGGCGGACGAAATGAAGCAACAAGCGTCCGATTATGCAAA
GGAGGCAGGACATGGTAGAGGTTTGTGTCCGGAAGAACTATCTTGTTGTA
TCGGctgtttgtttctttttattctttgtcTCGGAAAGCTACGAAGGCAA
TTTCTACCACTATTTggatatttttattaattttgaatgTTACAAATATT
AAATGGAGTGTGAATAAAAAGTACATGAAGAGCCGTCTTAATTTTTGATC
GGTCCTTCAATGAAGTTGATTGTCTTCTTCAACCTTCTTTACAGTCACAA
ATAATAGCCTTCACGAGGAAAACGAAACTCTACAAATGAAGATTGCAAGA
CTGGAAAATGAATGTAAACTGTAAGTCGGGTTTAATTtgtattattatcc
atatagcggtcattaagtaagccattaaagattcgaacggcgggtggtat
tgaaaggttctatgactcaaatagtcataccagcgctgagaaaactaagg
cgtcgtgcttcagagggctgaaatatcattaaccgccctggttatagagc
gataacgtcatttgcggcccgctcggaactttattgaagtcgttgcattg
aagcggtgagactaaaccgacgtcagaaaaaaacacttttttgtcatttg
aggcccgctcgcaagggtactcaaaacttgttgaagtcattgcattggaG
CGAAAATACTtggctgacgctagaaaaaaaacgttgtttgaatttttgat
acggataataatagtaatagcgttaagttttcgttcgttgttgtcattaa
ttctgcccttgcagtttgattattagccctctagtgccatttgcACCCTC
CGCTTCgcgaaaataacaacaacgacctcaaactgaacgccaTTGTTATA
TTAATTGGCAACATATGGTTGATGAAATATTTTGGCGTTTTTCATTACCC
GACCGAGCGAATTCATATcaagtaaaattgaaaaaaaatgagatcgggta
gctcagtcggtagagcattcgccttataatctaagggttgtgggttcgat
ccccggtcaccgccaactcagcggatgagtagcttagattgggtaatctg
atctaggcggtaagttactgggNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgatctcccaggt
ctagcgcaaatagaaaaggggatagactccctcactcccggctccgccga
cagccaccagatgaatatacttacttacttactactgAAAAAAAAATGGT
TCAAACACCGAAAAGCTCCGGGAAAATGAATTCAATCatgaaattttaag
ttttgttttaaaCCTATGTTTTTATCTTTCTCGAATCTCTCTCTTCATAG
ATTGAGGCAAGAAAATCAATTACTGTCAAAAGCTCAACCTTCCTCAAGGC
CATCATGCGTAAGTCTTTTCACATACTTACAGATTTGCTtctacttttga
aatatttttggaatacttataaaattttacttttaagtTACAATTGAGAG
CGTTCTCTAATCCGACGTTCTCTTATTCTACGCGTTCCATTATTCGATGG
TATTGAAAGCCATCGTGAACGAgaaactctctaattcgatagtaattcga
tacgctccattgggctattccagaaaaaaatgaatatatgGGGGGGTGGA
GGAATTGAAATCGactgttttttcgtttttttgtgaTTCGTTCTTTCAAA
TAGCACTTCTTCACGCATTTTCCTCTTTTGCAGTCTCCTTCACCGCAACG
TCACAGATTCGAATCCAATACAAGTACAGTGAGTGTAAACAATTTTTTGG
TTTATAACTTCTTATCAAAGCATGAGCATATCTTAAGTCCGtttgcttta
agtgtgcactattTTGCTTGCCATCttcaatcaattttaattctaacata
ttatataccgaaTATCAAAGCGAATTTATGGTACTTGAAGAAGTTGTTAT
TTTTACGTTAtgtaagggaagaaattttcgcggaatttaagtTCGCGGTT
GAGGGaactttttgtttacaattccaaaaagaccaattttagggtgattt
tttaaatcctgagaataATCATgtttcgtggaatttaatttcgcggattc
gTCAAAGaactgcgaaattaaattctgcgaaaatttcttcccttaaggta
tgcaAAATCTTGATGTAGTCGTTTATTGAAAGCCGTGTATTTAAAAAGAT
CTCGAGCAAGCTTCGAAATTCTTACACACTGTTTGTGCTGAGAGGGGTTA
AAAGGAACTTCAAGAAGGAGAAAGCTTCATGAAAAATTACAACTACTATA
CTGTTGCCATTTTCAACACGACAAGTCAGTTTACCAAtatgtttcttttt
caaatgaaTTCACTTTTCTTTACAGCATGGAGATGATGAAAACACGACAT
CTACCAGCAATAGTATTACTGTAAGTCTCTTCATTGACATCGCTGGTTTT
CATTTCTATATACAATTTTCGTAGACATTGTACATGTTATTCTTCTCACG
CATACACACCTCGACATATCTTCGATTCTTTTGCACGTCTTAAGCccggt
ctccacttgcgcgcgctgcgatcaaACTCTATCTAGCAAAGCtcccacgc
tattggtcaaaagaaaaatgaagcaattccattggcgcgatctgacgcaA
CGGTCGAAAAAAGTTAAAAcgtattcaacttttttttcgagcgctcGCTA
Cattttcatgatgtaatcttttttccaggcaaaaaggattgaagccaaac
gGTGTGGTCGCAGCGCGCGttagtggagaccggcctttactcTTGATTTA
TACCTACCATAAAGTGGCAATTTACTCAATTGttttaaatatcaaaaaat
ttgagaTAGAAATTATGTTTTAGAATTGTGGTTCTTATTGATTTCAGCGT
GCTTTATACCTGTAGTGTTTCTCTTGTCTTGAGGCCTTCATTTTAGGATA
GCTTGGATGCTTGTTACCCTTTCTCTTGCAATTCAACATCTCATTGGGTT
CCCAGCTAGAAGTAACCacaattttaaaatataattgctAAACTCTTGAA
TGACTGCTAATAATTTGGTAGtctttttaaaactgtttttattatattta
tgtGATATTATTAAATGTTTGAAATAAAGCTATAAGTTAATAATTCACGC
ACTAAACGATAAACagattaaataaatttttaatattaaaGTAGTGAACG
TAACTTATAATAACATGGTCGGATTgcttgaatgaatgaatgaaagaacg
aatgaatgaatgaatgaatgaatgaatgagtggTTGGTTGGTTGCGTGAA
TCGCTAAAATACGATTAAAATGTCGCGGATAGTATAAGATTAAACGATAA
AGCGCTTCATAATCATTCCATCGAAAAGCATCTTGGCTATCTTAATATGT
TGGCAAGAGAAACACTACCAGGTAACCTTGCTAAGATTTTTGTTCAAATC
TTTTCATTGCTTTTATTTATGTtgtgtacagggtgtcccgtaAAATGTCC
TGTGTCAGAACACGActacaaataaaaaaataatcaactaCACAAATGTT
TCCAACTTGTAGTCAAATTTTGATACAACACTCTTTTTCAGGACACCCTG
TAAAATTCTTGTGctatattttcagatttttttgtccTTTAGGGTCGGCG
CAAAATCTGAGAATttgcaaaaactaaaacttgGTATAATTTATTTCCCC
CCCTGTAGATTGATGAGaattgttctgtaaaatacaacgaTTGGGTGGAC
TGGCTGGTTATTGAAGCATTCTGATCCAAGTCGAAATGAATTCTGCCAGC
ATCATAGTGGCTAACAATCTGAAATTTCAAATCTTATCACTCCAACGATG
TTAATTGgtcttgaaaaatatatttcttggAATGCGTTCGATTAAACTGT
GTGGATGGTTTGTATTTAATGTGAAAGCCTACTTTGCTTGATTAATTGTA
GTTTATGTTTCGTGTTATTTGGTTTTTGGTGTTGCGTATTATCTAACTGT
TAATTATACAAAAtgtgttatttttttattgaatttcaattaatttaatt
tttagagAGTACacactttatttttttaatgaattaattttttcttaatt
attaatcgaaaaatatttttatacatcaatcatatcatatcatattcTCG
TATACGTTCAAACTTTCATCTTGCACTGTTGTTTCTTTCTAGCGGAAAAA
CCTTCTATCTCATTTTCTATCTCATTCAATGTGTCACCCTCtcttgacgt
caatgcaatgacttctttcgtTCTTAAATAAGTATTTATCTTTGATAATC
CAGCCGGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006278XLOC_006278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011211-exon-sc0000122-1491911889:462403..462627TCONS_00011211-exon-sc0000122-1491911889:462403..462627Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:462403..462627TCONS_00011211-exon-sc0000122-1510915933:462403..462627Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:462403..462627TCONS_00011211-exon-sc0000122-1575043694:462403..462627Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:463576..463722TCONS_00011211-exon-sc0000122-1491911889:463576..463722Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:463576..463722TCONS_00011211-exon-sc0000122-1510915933:463576..463722Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:463576..463722TCONS_00011211-exon-sc0000122-1575043694:463576..463722Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:463947..464022TCONS_00011211-exon-sc0000122-1491911889:463947..464022Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:463947..464022TCONS_00011211-exon-sc0000122-1510915933:463947..464022Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:463947..464022TCONS_00011211-exon-sc0000122-1575043694:463947..464022Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:465153..465210TCONS_00011211-exon-sc0000122-1491911889:465153..465210Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:465153..465210TCONS_00011211-exon-sc0000122-1510915933:465153..465210Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:465153..465210TCONS_00011211-exon-sc0000122-1575043694:465153..465210Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:465536..465580TCONS_00011211-exon-sc0000122-1491911889:465536..465580Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:465536..465580TCONS_00011211-exon-sc0000122-1510915933:465536..465580Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:465536..465580TCONS_00011211-exon-sc0000122-1575043694:465536..465580Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:466178..466222TCONS_00011211-exon-sc0000122-1491911889:466178..466222Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:466178..466222TCONS_00011211-exon-sc0000122-1510915933:466178..466222Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:466178..466222TCONS_00011211-exon-sc0000122-1575043694:466178..466222Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1491911889:467511..468110TCONS_00011211-exon-sc0000122-1491911889:467511..468110Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1510915933:467511..468110TCONS_00011211-exon-sc0000122-1510915933:467511..468110Clytia hemisphaericaexon
TCONS_00011211-exon-sc0000122-1575043694:467511..468110TCONS_00011211-exon-sc0000122-1575043694:467511..468110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:462403..468110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.39833	11.1115	7.03251	4.38133	14.6312	10.7904	22.3695	26.2323	24.3489	25.9473	13.516	20.9144	11.1048	12.0588	13.1817	13.8038	6.64956	5.74507	9.4693	11.8884	4.0581	2.62081	4.39109	4.76372	4.23409	4.22568	4.84359	3.63712	6.21361	4.9953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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