XLOC_006125 (gene) - C. hemisphaerica

Overview
NameXLOC_006125
Unique NameXLOC_006125
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000118:86851..96507-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006125 ID=XLOC_006125|Name=XLOC_006125|organism=Clytia hemisphaerica|type=gene|length=9657bp|location=Sequence derived from alignment at sc0000118:86851..96507- (Clytia hemisphaerica)
ATTTTGAACAGTTTTGAACTATAAAAAAGTTAAACAAAATGGCGGAGGAT
GATGTCTTAGATGAAGATGCATTACAACAAATTTACACATGGATAGATGA
AGTGCCATTGTCACGCCCAAAGAAAAATATTGCACGTGATTTTAGTGATG
GAGGTACAATTTTATCTTTCCTTTCACAAGAAAGATTTTTTGTCTGGATT
TTCCTCTTCTAAAGGCTCTCGTGTCTCCAAAAATCTTGAAGCATAATATT
ATTTTATTACATGAACAATTGCCACCAGATTACTAAATGTTATTGAAAAT
AATATAAAAAAATAATTCATAAAACATGTATTTCTGGTGAAACGGAGACA
AGAGAAATGCATGCCGTTAGTAATATAGTTAGACTCTTTTCACATACGTT
TTAAAGGGAAGAAACTTCTGCTGGAAGAACTTTTTGAAAACAAATTTTTG
CTTTTTTTTGATAAATCCGCAAAATTAAATTCTGCAAAAATTTGTTCCTG
CGAAAATATCTTCCCTTGGTAAAGGTACATTTGGAATCTTTTTCAGTTTT
GATTGCTGAAATAATACACCATTATTTACCGAAGATGGTAGACCTTCACA
ACTATTCACCAGCGCATGCTACAGCAAAGAAAATGGATAATTGGAATGTG
TTAGGAAGTAAGAGTTTTATTTTTATGTTTATTTACCTTTATAGTGATTC
TTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTTTAAATTAACC
CATGTCCGTTCGTCCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTGTTCTCGTATTATTCTGCATTTTCATAC
TATTGTTCTCATTTTTCAATTGTCTTATTACATCAATCTTCAGGTAGGTC
CATTCAGCATGTAGCTTGTTCTTCTTTTTTTTTACTTTTTATGGAAAATT
TTCACGTGGGCCAAATTTCACAAAACGGTCTCTTTTTCACCAAATTCTTT
TTCATTTTCCTAGGTCCTAGCTTTGGACAAAAAAATACTAAGCTGTCATT
ATAATACTTTATTCTAGATGTGACTCATGAAGTTTAATTTTAATTCTTAT
ATGCCACCCCTATTTAAAAACTTCCTTAGGCAATTATTCTTTTTTCAAAA
GGAAAATGCTTCAATAAATTGAATTTCAATGTAAAAGATGGCCTGATCAA
AGGAGCTGTCTTTGCTGAACCTGGTGCTGTGGAATTGATTCTGAGAGATC
TGAGACTTTGTGTAAGTTGAATGTTTTTCAAAATTATATGATTCAGTGCT
GCAAATAGGGAAATTTCAGTTGGCCGGAAATTTTTCGAGTGTAACGAGAG
GGGGTCTGGCGGAACCATCTTTGTAGTCTGTTATTACAGATCGACTTATT
GGATTATTAGATTTGCTAAACACCTATTTTAATGAAGCGCTATAAGTATT
AATCTAAGCCTCTAATCTTCAAATTTTAAACGGACAAAATAAAAAACTGA
GCTTCAGAATGGCCGGTAGAAACTATGAAATGACCGGTAATTACCGGTCA
CCGGCCGTTATTTGCAGCACTGTGATTATTATTCCTAAATCAAGGCTTTA
AGTTTTTACTCCTCAGGAAAAAGAGATTATGGGTTGTGTTGTGTCATATA
TCAAACGAATGCTTGAATATTTAATTTTTCTCGCTTTTTAATGTGACTGT
ACTGTACTGGTGTCTTAAGGGCTACAAATACAGACAAAATATTTTGTCAG
ACAAAAAATTGGTGAGTTGTGAGTGTTAACAGTATATTGTAAAGTGCTTA
CAATATATTGAAAAGGTGTTTACAATATTCTTCCAGCTCGATTTACAACA
TTCCAAAATAGGGTGATTGTTTACATAGGAAATTCCACCTTCTAATAGAC
TATCTGATTGTTTACTTCGCACATTACGGATCGCAAACCATATTACCAAT
TATTGTTCGGTCTAAGTAGCCCTTTAGGTTAAAATTTTTCTTCTTTGCTC
CAGATTGACACATATGCAGCACGAAAGAAAGCGCAAGCCATGATGGAAAA
ACACCAAATACACGATGAGTTATCTAACAGTACAAATAGTTATGAAGGAA
CCGGTCAATACCAACCAGGTCTGTATAATTGAGATCATTTATTGAAAGAA
AATAGTACCCTAATGGAAGAACTACTCTGTGTGTCAATTTATAACTCCAC
GAAATTTTCCGTTTAAATTTTTTTTTCACCCACATTGAGTAGTGTTAAAA
AAACTCCGATCAAAAATTTTGCTTGACCGTGCGAGAATCGGGATTAATCG
ATTGAACTGTTGGCTTGTCCTATTGGTTATACAATTTTTTTCAAAGCTTT
TGTTAATCTGATGAGCTATCTGAAAAAAGTTTAAAAATTTCTATACTAAA
CGTCTAAATCTCTTCCTAGGCGAGACCAATTTTATTTATTGTTCTACGGG
AAGATCTTCAGTAAAAATGTGGGTCGGTCTATTGGTATAATAAAAATAAA
TTTCTTAAAATCTAGGGTCGGAAAGTCCATCCAGCTTTTCAAATTCGATA
ATTAATTTTTCGATTTTGGAAAAAACAGGGTCGGTCGGACCCGTAGAACA
TAAAATTAGTTTGGTCTCGCCTTAACCAATACAAATGTTTACCGTGTAAA
GTATCTTTAGAAAAACTGAACATGAAGTTGAGTGTTTTCATAATTTTACA
AATCCTTGAACTCAAAAAAACTTTAGAAAGTTTCTCCCTTAAACTCGGTG
ACAAAACTAAAACGTTTTCTCTCGAAGGCTATGAAGGATATCAGTATGAA
CCACAAGTTTCAACCCAACAAGAAGCATACCACTCACAACAACAACCTCC
ACAATCTAATGGTCATTCACTGAACGAACATGGCCCGTATAACTATCAAA
GTCAGGTAATATTTAATTTGAAACTTCATTTCAAAACCTATTTTACAGAT
AATTTTGATTTTTGTTACTATCTTGTGATACTGAGTGAAAAAGCCATTAT
TTTCAAGATGTTATGTTTTCAAACGTTATGGACTATATTTGATTTGATTT
GGTCGAAGTTTTAGGCAAGGGGAAATTCCACTAGTCAGTTTTTTAAAGAT
TCAAAGTTTTTTTTGTAAGTTCAATAGCCAATTAGAAGAAAATATTCTGT
TCTTTTTAAAATATACTCGCTTTAGAGAACTCGTTTAAATTTTGTAATTT
TGTACTGTATTTTAATTTTCTTACACATACAGCCACACGCGGTACAAAGC
CCTCAAAAAGCAGACAAACCATCGCCTCAACATCGTAAACCTGTCACGCA
AGTTTCCAAATACTCCAAACCTAAAAGGTATGGACTGGTATTATTTTTTG
TATCTGTTAAAAATTTATTTGCGTTCATCTATCAACCCTTTCGTGGCGCG
ATATGCTTTTTAGGGGACTGGTAATGAATTTGCAAAGAAGTTTTTCTCGG
CGCACGGCATTTTTAAACTACTTCTAAAACAAACCAAGCAAACTCCCGCC
AAAACTTTTACTTCATTTCGAGAGACATTTCCCTAAGTTTCTGAGGTGGA
GTGCAAACTAATTTTAGCATTCGAATGGCTTAATTTAATTGACGTAGCTT
TCTCACAGGGTATCTAACATATCTTTCACAAGATTCCTTCTGAACTTGTG
TTTTCGATACAGTCGTCACAAGAAATTTTACTTGTAAATTCAATGTCAGT
CTCCTAAAAAGCTGACCGCACCGCTAAGGAATTTTGATAGATATGCAAGG
CTTATTATTGAAATACTTATGTTTATACAGTCGAGTTTCTATAATTTGAA
CTTACACGGGGAACACAAATATGTTCGATTTAAGACAATTTCGAGTTATG
AATTAGGGTTTGTAAGGCATCTATACCTAAAGAAACGAGAAAATTTGTTC
GAGTTTTTAGGAGGCTTTCGATTTGAGACTCTATTGTATTTTTTCACAAT
TTACAGGAGAGATTCAGACAATGAGAAAGGTAACGGACAACAAGAGAATT
TGAGGATTGCTTTNTAACCAATACAAATGTTTACCGTGTAAAGTATCTTT
AGAAAAACTGAACATGAAGTTGAGTGTTTTCATAATTTTACAAATCCTTG
AACTCAAAAAAACTTTAGAAAGTTTCTCCCTTAAACTCGGTGACAAAACT
AAAACGTTTTCTCTCGAAGGCTATGAAGGATATCAGTATGAACCACAAGT
TTCAACCCAACAAGAAGCATACCACTCACAACAACAACCTCCACAATCTA
ATGGTCATTCACTGAACGAACATGGCCCGTATAACTATCAAAGTCAGGTA
ATATTTAATTTGAAACTTCATTTCAAAACCTATTTTACAGATAATTTTGA
TTTTTGTTACTATCTTGTGATACTGAGTGAAAAAGCCATTATTTTCAAGA
TGTTATGTTTTCAAACGTTATGGACTATATTTGATTTGATTTGGTCGAAG
TTTTAGGCAAGGGGAAATTCCACTAGTCAGTTTTTTAAAGATTCAAAGTT
TTTTTTGTAAGTTCAATAGCCAATTAGAAGAAAATATTCTGTTCTTTTTA
AAATATACTCGCTTTAGAGAACTCGTTTAAATTTTGTAATTTTGTACTGT
ATTTTAATTTTCTTACACATACAGCCACACGCGGTACAAAGCCCTCAAAA
AGCAGACAAACCATCGCCTCAACATCGTAAACCTGTCACGCAAGTTTCCA
AATACTCCAAACCTAAAAGGTATGGACTGGTATTATTTTTTGTATCCGTT
AAAAATTTATTTGCGTTCATCTATCAACCCTTTCGTGGCGCGATATGCTT
TTTAGGGGACTGGTAATGAATTTGCAAAGAAGTTTTTCTCGGCGCACGGC
ATTTTTAAACTACTTCTAAAACAAACCAAGCAAACTCCCGCCAAAACTTT
TACTTCATTTCGAGAGACATTTCCCTAAGTTTCTGAGGTGGAGTGCAAAC
TAATTTTAGCATTCGAATGGCTTAATTTAATTGACGTAGCTTTCTCACAG
GGTATCTAACATATCTTTCACAAGATTCCTTCTGAACTTGTGTTTTCGAT
ACAGTCGTCACAAGAAATTTTACTTGTAAATTCAATGTCAGTCTCCTAAA
AAGCTGACCGCACCGCTAAGGAATTTTGATAGATATGCAAGGCTTATTAT
TGAAATACTTATGTTTATACAGTCGAGTTTCTATAATTTGAACTTACACG
GGGAACACAAATATGTTCGATTTAAGACAATTTCGAGTTATGAATTAGGG
TTTGTAAGGCATCTATACCTAAAGAAACGAGAAAATTTGTTCGAGTTTTT
AGGAGGCTTTCGATTTGAGACTCTATTGTATTTTTTCACAATTTACAGGA
GAGATTCAGACAATGAGAAAGGTAACGGACAACAAGAGAATTTGAGGATT
GCTTTGGAAGAAAAAGAACAAGCTTTGTTGGCTTCACAAGAAACTGTACA
GGTATACCAACTTTGTTACTTCTAGTTAGCTCAGCTTCTTAGACCATGTT
ATAGGGTGTTCCAAAAAAAAAGTCCTGATTCAAAACGCGACCACAAGTAG
AAATATTTTAATTAAAGAGAGAAACTAGACATACACAAACAAAATTTCTT
CTGCTTGAAGTCGTGTTCTCACACAGGACTTTTATTCCGGGACACCCTGT
ATATGTAGAAAATATTTGTGTGCTTGCGTATTTTAATAAGATGCAATCAT
TAATATCTTTTGCTTTGTATGAAAGAGCATAAAAAATAGTTTATTACACA
ATTGATTTTTTAATTATGTTTATGACGTTTCTGTTTCATTAGAACCACTT
AAGTGTCAATTACTGTTTTGTGTTAAAGAGAGAAGCTAACACACAGAGAT
CTTTCTACTTGTAGTTGTGTTCTGACACAGGACTTTTCCGGGACACCCTG
TATATCATGAAATAATGAAAGTCTTTTTAAATGAGTCTGTATTAATCATA
GCCTTTTTGTTGGGGGTAATTTGGCTCATTTGAGTTGGGTACCTTAAGGG
AAGAAATATTCGCGGAAAGAAATTTTCGCGGAATTTTAAAAAACCGCGAA
ATTAAATTCCGCAAAAATTTCTTCCCTTAAGGTAAGTCAAAAGTGATCCC
ACAGTGGCTATAAAGAGCGTGAGTGAGATCAAAATAAACAATATAACATA
TGATATCTTATAATAACTAATTTTTGGGCTGCAAAAAAATAGTTCTTGCC
AAAATTAAAAAAAACCGCTTCCTCGCTATAAGTTTGAACTATTTAAGGAC
TTTAGTTAAAACTTGAACTTTATAAAAATTTCCATTTCAGATTCTTCAAG
ATAAAGTGAAACACTTGGAACATCTTGTACAACTAAAAGATTTAAAAATA
ATTGAACTAAATGATGAACTAACCTCATCAAATCAACCCCGCCCTTCTTA
CCAACCCCCAACTCGACAACCGCCCTTATACACCCCAAATTCCACCCAAT
ACGCCTCAACACACCCATACAGTCCTAACACAACTCAATATGTTCCGAAC
ACACCTAATTTAGACCAATATTCACCGAGTCCTGCTTCTCAACCTAATGC
ACCAACTACAGTCCAGTATATCCCTTCCCAGTACGTACCGCCCTCCTCTG
TAAACCCTCACGCCCAAGACCACCGGGCTTTCAGAGCCTCTTATAAATAT
TGAAACCTTTAAAACCTTCATAAATTTTAACTATCAAAAACCAGACTACA
CCCACATCTAAAATCATTTTAATATTTGTAAAAATTAATCTTTGGTAAGT
ATAATTAAATTAAAATTAAAATAAAGTCATTTATAATTTTAAGTAAAAAA
GTCGAAAAGTACTTAAAAATGCTAAGATAATAAACGAAACTTTNAAATTA
TTTTAATATTTGTAAAGATAAATCTTTGGTAAGTATAAGTAAAGTAAAAT
GAAAATAAACTCATTGATAAAATTTTAGCATAAAAACTCAAGTCAATTTA
AGTATTTTAAAATACCGAGATACTGTAATTATTTTTAAAGTAAAAAAAAA
AAACGATCTCATTTGTTTCAATATAATATGATTTTTTTCAACGTTTCACC
ATTTGATAACAGATTCTTCAAGCAAAAATTCGTCGTCTTGAGCATTTACT
TCATTTGAAAGACTTACGTTTGAACGAAATCAAAAAACAACTTCCGCCTT
CCGCCCAAAGCCAAATTACATCCGCCCAACCACAACCCTTACACCCTGGA
GCAGCACCTATGTTACCCGGAGCTTATAGACATTTACATCCTCAGCAAAT
TCATCCGGGCGGTCCCCCGCCCTCTCAACAATTTCCCATCCGTCCACCAT
TACCGCAAATTCCGAGACCGCCCGGTAACGAAGAATATCGGAAATACCCA
AGATGAGCATTTTTTGAAATGGTGTTAATACAAATGAAAAATTAAGCACG
TTGGAGAGTGAATAGTGCATTCGATGAAGCCATCCTGAACAGTCGCACAA
CCGGAGAACGAAGACATTTAACATCATTATTGTGGCTTCATTGGCTTGAA
ATTTCGAGTTTCATTTATATCAATACTATTATAGAGTATTGTGTCGAAAA
GCTACGAGGAATTTAGATTGACATAGTTAAGGTTGATTTACATATATGCT
GGGATCACACAGTATATTTCACTTATAGACATATTGATAAAAGTCTGAAA
CTTGTTAAAACTCGGATTTATAGATCAATATAGCATTAATATGGACAATA
TGGAATCAAGTAAAACCATGTCGAATCAAGTTAGACCATGTCGAATCATC
TTCTTAAGAATTTAAATATTGGTATGCTTATAAATTTGTGCACGCAATGA
AAAGATGTTAATTGAATACACTCATTTTGTTTTATAAGCATACGGTAAAT
TTCGGCTGAAGCTCACTATGCTTAAGTGAAGCTCAATTTTGAGCCTCGAC
TTATGCTTAACCTTATGCTTGGTAAAAATATTATGAAGAGGGGCGGGGTA
AAAATTTTTGCAAATTTTCCCCTCTTTAATCTTGAGAAAAATGAAGATAT
TCTATTGTTTTCAAATGTTTACCATATAATTTCGAATCTTTTGTTGTGTG
TTCATGTTTCAAATACAGACTGCTACACTTCTGAAGTTTTGGAAATTATG
ATTCTAAAAATTTCTTTGGCTGAGCCTCAAGGTATGCTTAGCATATGCTT
AATTTTTCTGGAAATTTGAGCTTCAGTATGCTTATAAACGTTATGCTTAT
AAAACAAAATGAGTGTATCTCCCTGGTCGGGTAGTTGGCTTGTTTTTGAA
TTTCGAGGTTGATATTTTTTTCCCATTATTTTTTGATCACATGATTAAAA
TCTGCGTCAGAGAAAGAGAGGTCAATAATTAAATTGTTGTGGAAGCTGCA
TTGACATTCTTACAGACAAAAAAAATTGCCGTTGGTTCCTTTACCTCTAG
TTTAGACGGCCCACTTTTCGCCCTGCCTATTCTAATTGTGAATTAAAATG
GGCATAAAGTGGGCTGAAGCGCCCAAAATCCTCCTATGCAACTGAAATCC
ATTTTCCACGAATAATTTATTTTGTAAATACCTTCTTTTTTTTTAATACA
ATGATGTAATGCTAAGATTGTAAGATATGTTAATTATATATGATGATTTG
CACTTTTTTTATACTTTTTATGATGATAAATTATAAATGTCTGGTTGAAT
GAATGTTGGAAAAAAATCTAAATTAAAAAACTACTATTGGAGATATTTTG
GAGTGACCTAGAATCAGTAGGCATTTTGCTAATAGGATAATGGTCTATTC
CAGAAATAGTCTGTACCCCCTATGTTGNGAAAAAAATCTTAATTAAAAAA
CTACTATTGGAGATATTTTGGAGTGACCTAGAATCAGTAGGCATTTTGCT
AATAGGATAATGGTCTATTCCAGAAATAGTCTGTACCCCCTATGTTGAGG
AGGTGTGACGTCCAAACCCCAGTATGTTTTGGTTTTTGAATGAAAAAATC
TAGGGTGGTCAGTATAATCCGGGTGAAAATCCAGGGGTGGNAAATGAAAA
AATCTAGGGTGGTCAGTATAATCGGGGTGAAAATCCACGGGTGGTCCGTA
TAACGAGGTCGAAAATCCAGGGTGGTCCAAAAATGGGAGAAAAAAATCCA
AGGGGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010906TCONS_00010906Clytia hemisphaericatranscript
TCONS_00010905TCONS_00010905Clytia hemisphaericatranscript
TCONS_00010904TCONS_00010904Clytia hemisphaericatranscript
TCONS_00010903TCONS_00010903Clytia hemisphaericatranscript
TCONS_00010902TCONS_00010902Clytia hemisphaericatranscript
TCONS_00010901TCONS_00010901Clytia hemisphaericatranscript
TCONS_00010900TCONS_00010900Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010900-proteinTCONS_00010900-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:86851..96507 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SPEF1sperm flagellar protein 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.72	5.64	5.97	6.34	48.45	35.62	24.95	28.78	16.94	21.12	14.97	9.84	12.91	13.81	5.15	9.09	10.51	10.48	14.55	15.73	10.38	9.27	10.61	12.66	32.43	24.94	10.75	10.25	3.85	5.23