TCONS_00010906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010906
Unique NameTCONS_00010906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010906 ID=TCONS_00010906|Name=TCONS_00010906|organism=Clytia hemisphaerica|type=transcript|length=761bp
cagttttgaactataaaaaagttaaacaaaatGGCGGAGGATGATGTCTT
AGATGAAGATGCATTACAACAAATTTACACATGGATAGATGAAGTGCCAT
TGTCACGcccaaagaaaaatattgcacgTGATTTTAGTGATGGAGTTTTG
ATTGCTGAAATAATACACCATTATTTACCGAAGATGGTAGACCTTCACAA
CTATTCACCAGCGCATGCTACAGCAAAGAAAATGGATAATTGGAATGTGT
TAGGAAgaaaatgcttcaataaattgaatttcaatgtaAAAGATGGCCTG
ATCAAAGGAGCTGTCTTTGCTGAACCTGGTGCTGTGGAATTGATTCTGAG
AGATCTGAGACTTTGTATTGACACATATGCAGCACGAAAGAAAGCGCAAG
CCATGATGGAAAAACACCAAATACACGATGAGTTATCTAACAGTACAAAT
AGTTATGAAGGAACCGGTCAATACCAACCAGGCTATGAAGGATATCAGTA
TGAACCACAAGTTTCAACCCAACAAGAAGCATACCACTCACAACAACAAC
CTCCACAATCTAATGGTCATTCACTGAACGAACATGGCCCGTATAACTAT
CAAAGTCAGCCACACGCGGTACAAAGCCCTCAAAAAGCAGACAAACCATC
GCCTCAACATCGTAAACCTGTCACGCAAGTTTCCAAATACTCCAAACCTA
AAAGGAGAGATTCAGACAATGAGAAAGGTAACGGACAACAAGAGAATTTG
AGGATTGCTTT
Run BLAST on NCBI

transcript from alignment at sc0000118:91945..96499-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010906 ID=TCONS_00010906|Name=TCONS_00010906|organism=Clytia hemisphaerica|type=transcript|length=4555bp|location=Sequence derived from alignment at sc0000118:91945..96499- (Clytia hemisphaerica)
CAGTTTTGAACTATAAAAAAGTTAAACAAAATGGCGGAGGATGATGTCTT
AGATGAAGATGCATTACAACAAATTTACACATGGATAGATGAAGTGCCAT
TGTCACGCCCAAAGAAAAATATTGCACGTGATTTTAGTGATGGAGGTACA
ATTTTATCTTTCCTTTCACAAGAAAGATTTTTTGTCTGGATTTTCCTCTT
CTAAAGGCTCTCGTGTCTCCAAAAATCTTGAAGCATAATATTATTTTATT
ACATGAACAATTGCCACCAGATTACTAAATGTTATTGAAAATAATATAAA
AAAATAATTCATAAAACATGTATTTCTGGTGAAACGGAGACAAGAGAAAT
GCATGCCGTTAGTAATATAGTTAGACTCTTTTCACATACGTTTTAAAGGG
AAGAAACTTCTGCTGGAAGAACTTTTTGAAAACAAATTTTTGCTTTTTTT
TGATAAATCCGCAAAATTAAATTCTGCAAAAATTTGTTCCTGCGAAAATA
TCTTCCCTTGGTAAAGGTACATTTGGAATCTTTTTCAGTTTTGATTGCTG
AAATAATACACCATTATTTACCGAAGATGGTAGACCTTCACAACTATTCA
CCAGCGCATGCTACAGCAAAGAAAATGGATAATTGGAATGTGTTAGGAAG
TAAGAGTTTTATTTTTATGTTTATTTACCTTTATAGTGATTCTTTTTTGG
ACCTACCTCCGGGTACCCCGGTGGAGGTCCTTTAAATTAACCCATGTCCG
TTCGTCCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGTTCTCGTATTATTCTGCATTTTCATACTATTGTTC
TCATTTTTCAATTGTCTTATTACATCAATCTTCAGGTAGGTCCATTCAGC
ATGTAGCTTGTTCTTCTTTTTTTTTACTTTTTATGGAAAATTTTCACGTG
GGCCAAATTTCACAAAACGGTCTCTTTTTCACCAAATTCTTTTTCATTTT
CCTAGGTCCTAGCTTTGGACAAAAAAATACTAAGCTGTCATTATAATACT
TTATTCTAGATGTGACTCATGAAGTTTAATTTTAATTCTTATATGCCACC
CCTATTTAAAAACTTCCTTAGGCAATTATTCTTTTTTCAAAAGGAAAATG
CTTCAATAAATTGAATTTCAATGTAAAAGATGGCCTGATCAAAGGAGCTG
TCTTTGCTGAACCTGGTGCTGTGGAATTGATTCTGAGAGATCTGAGACTT
TGTGTAAGTTGAATGTTTTTCAAAATTATATGATTCAGTGCTGCAAATAG
GGAAATTTCAGTTGGCCGGAAATTTTTCGAGTGTAACGAGAGGGGGTCTG
GCGGAACCATCTTTGTAGTCTGTTATTACAGATCGACTTATTGGATTATT
AGATTTGCTAAACACCTATTTTAATGAAGCGCTATAAGTATTAATCTAAG
CCTCTAATCTTCAAATTTTAAACGGACAAAATAAAAAACTGAGCTTCAGA
ATGGCCGGTAGAAACTATGAAATGACCGGTAATTACCGGTCACCGGCCGT
TATTTGCAGCACTGTGATTATTATTCCTAAATCAAGGCTTTAAGTTTTTA
CTCCTCAGGAAAAAGAGATTATGGGTTGTGTTGTGTCATATATCAAACGA
ATGCTTGAATATTTAATTTTTCTCGCTTTTTAATGTGACTGTACTGTACT
GGTGTCTTAAGGGCTACAAATACAGACAAAATATTTTGTCAGACAAAAAA
TTGGTGAGTTGTGAGTGTTAACAGTATATTGTAAAGTGCTTACAATATAT
TGAAAAGGTGTTTACAATATTCTTCCAGCTCGATTTACAACATTCCAAAA
TAGGGTGATTGTTTACATAGGAAATTCCACCTTCTAATAGACTATCTGAT
TGTTTACTTCGCACATTACGGATCGCAAACCATATTACCAATTATTGTTC
GGTCTAAGTAGCCCTTTAGGTTAAAATTTTTCTTCTTTGCTCCAGATTGA
CACATATGCAGCACGAAAGAAAGCGCAAGCCATGATGGAAAAACACCAAA
TACACGATGAGTTATCTAACAGTACAAATAGTTATGAAGGAACCGGTCAA
TACCAACCAGGTCTGTATAATTGAGATCATTTATTGAAAGAAAATAGTAC
CCTAATGGAAGAACTACTCTGTGTGTCAATTTATAACTCCACGAAATTTT
CCGTTTAAATTTTTTTTTCACCCACATTGAGTAGTGTTAAAAAAACTCCG
ATCAAAAATTTTGCTTGACCGTGCGAGAATCGGGATTAATCGATTGAACT
GTTGGCTTGTCCTATTGGTTATACAATTTTTTTCAAAGCTTTTGTTAATC
TGATGAGCTATCTGAAAAAAGTTTAAAAATTTCTATACTAAACGTCTAAA
TCTCTTCCTAGGCGAGACCAATTTTATTTATTGTTCTACGGGAAGATCTT
CAGTAAAAATGTGGGTCGGTCTATTGGTATAATAAAAATAAATTTCTTAA
AATCTAGGGTCGGAAAGTCCATCCAGCTTTTCAAATTCGATAATTAATTT
TTCGATTTTGGAAAAAACAGGGTCGGTCGGACCCGTAGAACATAAAATTA
GTTTGGTCTCGCCTTAACCAATACAAATGTTTACCGTGTAAAGTATCTTT
AGAAAAACTGAACATGAAGTTGAGTGTTTTCATAATTTTACAAATCCTTG
AACTCAAAAAAACTTTAGAAAGTTTCTCCCTTAAACTCGGTGACAAAACT
AAAACGTTTTCTCTCGAAGGCTATGAAGGATATCAGTATGAACCACAAGT
TTCAACCCAACAAGAAGCATACCACTCACAACAACAACCTCCACAATCTA
ATGGTCATTCACTGAACGAACATGGCCCGTATAACTATCAAAGTCAGGTA
ATATTTAATTTGAAACTTCATTTCAAAACCTATTTTACAGATAATTTTGA
TTTTTGTTACTATCTTGTGATACTGAGTGAAAAAGCCATTATTTTCAAGA
TGTTATGTTTTCAAACGTTATGGACTATATTTGATTTGATTTGGTCGAAG
TTTTAGGCAAGGGGAAATTCCACTAGTCAGTTTTTTAAAGATTCAAAGTT
TTTTTTGTAAGTTCAATAGCCAATTAGAAGAAAATATTCTGTTCTTTTTA
AAATATACTCGCTTTAGAGAACTCGTTTAAATTTTGTAATTTTGTACTGT
ATTTTAATTTTCTTACACATACAGCCACACGCGGTACAAAGCCCTCAAAA
AGCAGACAAACCATCGCCTCAACATCGTAAACCTGTCACGCAAGTTTCCA
AATACTCCAAACCTAAAAGGTATGGACTGGTATTATTTTTTGTATCTGTT
AAAAATTTATTTGCGTTCATCTATCAACCCTTTCGTGGCGCGATATGCTT
TTTAGGGGACTGGTAATGAATTTGCAAAGAAGTTTTTCTCGGCGCACGGC
ATTTTTAAACTACTTCTAAAACAAACCAAGCAAACTCCCGCCAAAACTTT
TACTTCATTTCGAGAGACATTTCCCTAAGTTTCTGAGGTGGAGTGCAAAC
TAATTTTAGCATTCGAATGGCTTAATTTAATTGACGTAGCTTTCTCACAG
GGTATCTAACATATCTTTCACAAGATTCCTTCTGAACTTGTGTTTTCGAT
ACAGTCGTCACAAGAAATTTTACTTGTAAATTCAATGTCAGTCTCCTAAA
AAGCTGACCGCACCGCTAAGGAATTTTGATAGATATGCAAGGCTTATTAT
TGAAATACTTATGTTTATACAGTCGAGTTTCTATAATTTGAACTTACACG
GGGAACACAAATATGTTCGATTTAAGACAATTTCGAGTTATGAATTAGGG
TTTGTAAGGCATCTATACCTAAAGAAACGAGAAAATTTGTTCGAGTTTTT
AGGAGGCTTTCGATTTGAGACTCTATTGTATTTTTTCACAATTTACAGGA
GAGATTCAGACAATGAGAAAGGTAACGGACAACAAGAGAATTTGAGGATT
GCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006125XLOC_006125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010906-exon-sc0000118-1575043694:96355..96499TCONS_00010906-exon-sc0000118-1575043694:96355..96499Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:95851..95961TCONS_00010906-exon-sc0000118-1575043694:95851..95961Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:94697..94806TCONS_00010906-exon-sc0000118-1575043694:94697..94806Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:93840..93954TCONS_00010906-exon-sc0000118-1575043694:93840..93954Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:93053..93180TCONS_00010906-exon-sc0000118-1575043694:93053..93180Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:92631..92725TCONS_00010906-exon-sc0000118-1575043694:92631..92725Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1575043694:91945..92001TCONS_00010906-exon-sc0000118-1575043694:91945..92001Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:96355..96499TCONS_00010906-exon-sc0000118-1510915933:96355..96499Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:95851..95961TCONS_00010906-exon-sc0000118-1510915933:95851..95961Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:94697..94806TCONS_00010906-exon-sc0000118-1510915933:94697..94806Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:93840..93954TCONS_00010906-exon-sc0000118-1510915933:93840..93954Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:93053..93180TCONS_00010906-exon-sc0000118-1510915933:93053..93180Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:92631..92725TCONS_00010906-exon-sc0000118-1510915933:92631..92725Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1510915933:91945..92001TCONS_00010906-exon-sc0000118-1510915933:91945..92001Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:96355..96499TCONS_00010906-exon-sc0000118-1491911889:96355..96499Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:95851..95961TCONS_00010906-exon-sc0000118-1491911889:95851..95961Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:94697..94806TCONS_00010906-exon-sc0000118-1491911889:94697..94806Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:93840..93954TCONS_00010906-exon-sc0000118-1491911889:93840..93954Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:93053..93180TCONS_00010906-exon-sc0000118-1491911889:93053..93180Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:92631..92725TCONS_00010906-exon-sc0000118-1491911889:92631..92725Clytia hemisphaericaexon
TCONS_00010906-exon-sc0000118-1491911889:91945..92001TCONS_00010906-exon-sc0000118-1491911889:91945..92001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:91945..96499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44603	2.16263	2.24976	3.10691	25.5008	19.6642	12.3581	14.5619	8.06347	10.7522	5.7253	2.15712	3.00281	2.86411	0.565645	1.55781	3.99294	5.2418	6.50237	5.49906	3.13016	0.606535	4.65359	5.46048	18.9043	10.1455	3.48277	4.18976	0	1.36584
Blast
[Close]
BLAST of TCONS_00010906 vs. Swiss-Prot (Human)
Match: SPEF1 (Sperm flagellar protein 1 OS=Homo sapiens GN=SPEF1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 8.227e-36
Identity = 53/100 (53.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   49 LDEDALQQIYTWIDEVPLSRPKKNIARDFSDGVLIAEIIHHYLPKMVDLHNYSPAHATAKKMDNWNVLGRKCFNKLNFNVKDGLIKGAVFAEPGAVELIL 348
            +DE+AL Q+Y W+D +PLSRPK+N++RDFSDGVL+AE+I  Y PKMV++HNY PA++  +K+ NW  L RK   +LNF+V D +++      PG VEL+L
Sbjct:    5 VDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVL 104
The following BLAST results are available for this feature:
BLAST of TCONS_00010906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPEF18.227e-3653.00Sperm flagellar protein 1 OS=Homo sapiens GN=SPEF1... [more]
back to top