XLOC_006063 (gene) - C. hemisphaerica

Overview
NameXLOC_006063
Unique NameXLOC_006063
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000117:552665..558656+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006063 ID=XLOC_006063|Name=XLOC_006063|organism=Clytia hemisphaerica|type=gene|length=5992bp|location=Sequence derived from alignment at sc0000117:552665..558656+ (Clytia hemisphaerica)
GCTTAGGCCTCACTTTCACGAAATAAAGGACAACCTTGTCGATTTTATTG
ATTTCCATTGCGGAAAATTTGGTTAATTTATACGACAGTTGATTTTCATT
GAACTTGGGAAATCTAAGTTACCAAAATCTTTCTAGTTATAGATCTGACA
AGAaaattatggctgaaaattgcaaaaagtcACCATTATGAagaagattt
ttctttttatcgtATATCTATCACAAATCACCTTTACGCAAGCACGCTGG
GAGGTCAACAGACAAAGAACGCATGATGATATCATAGAGAAGCCGCGGAC
CGCTTCATGTGACCGATTGGAGTACAACCGTCTGGATGAAGGTGATTGTA
GATGCCCACGAAAGATTTTTCACGTTTACAGCAAAACAGAGTATGGTTGT
TATGATGCTGAAGCATTTTGCGAGACAGAGCTTTCAAGGAAATGGTTGGT
TAAAGGTGACTTTTATTAGCTGTCATTAAAATAAAAGGATTTTTCAGTTT
AATTATGGAACGCAGCTTCCGTAGTAATAGAACGAAGCATTCCAGAAGCA
AGACCTCTTTATTTGGTTTGAGCATTTCTTTACATTGTACGCGAGTCTTT
GTTACTAGAAATAGttagaaagtttttaaaatctaTGCAGATTTGGTAAA
GCCATTCATATACACATTCCTTCCCACTAGTGTGTTTGCTTtattaaccc
tatttttatcaggggggggtgttttccaccaggctggcactcttttgtta
atagctcactgaaaattttttttaacactctgaaagtttttgaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNactctgaaagtttttgacttttaatataatcctattagcagcatgta
taccaaattttacaattatacaccgaccagatcaggttttatgacttttt
agttcaggcatatcataaaatccagctaaaaccgtgtaaaatcccaaaat
cttaaatttagcataacttctGATCTAGTTATCcaattgacttcaaaatt
tgacaggttttaggtatcaataataaattttgaaaaatatttttaaaatt
ttcaaaaattgctgacctcatcaaaaattacgtcattgttttttgaaaaa
atttactcattttctgcatggattttaaacctcgattttattagtatgtt
aaaaaccggcagatatgttaaagatattctttttggcttttggaaattca
aaacagaactgaaaaatctccattcatTCAACTTTAatagctattttatt
gaatagtactttttcattggtcagcgataattgtgaaactttgtgatgac
gtcatcacctttatgatgacgtcatcaattcaattttttttctatgaatT
CCTTTTATAGTAGAAAatatttgtgccaaatttcaagtccatacctttcc
taaatcaaaagttatgcaaggctggtggaaaacacccccccttgagaata
caaaatccgaaaaagcctgataataatagggttaaacgTGACCCTCCAAG
AGCAATGTTCACTAATGAACAATTAAACTaattttttcgagttatggagt
aaggtttataaggcattggtAACTGAATGCAAGCTTAAAACTAGTATTTA
ATCACACTGTATTTCTCCTTTTATATTATGGAAATATCATTACATTGTCA
TAAAAATTTGCTTTCTTTCATAAATTTTGTGGCCTTCTTGCCTACACTAC
TGGAAGGGACCATAACAATCTTTCGAATTACCTTACTATTACCTAACCGT
TTCACAAAATTTGAGCTGAGGTAATTTTCGATCGAAAACACTGCCTTTAA
AAACTAAGTTCGCACACGTTTTTCCTGCGTTACATAAATTATGTTCGAGT
TAAAAATGTTTTCTGACATAAATCTCACAGACAGAAGCTTGATCATTTAG
AAGTTGTACGAAGAAAGTTAATCAAAATTTGTCGGAAATAAATACTTGTA
ACGAAGGGCATCTTTtaactattttgaaattttgtttccaGACTCGCGAT
GTCACCTTGCCAACGGCATGCTATGGAAATACGAATCAAGAAACGGCAAG
ACAAATCAAATATTACACTTCAATGCCGATCATTTGAATGACAACATGCA
CGCATGCGCAGTAGGAGATGAATCGAATTTGAAAGTCACCACAAGTTATT
GGGATGAAGAAAAAGGTTGGAAGAGTGCTAATAGTGGTAATGATGGATCA
ATGAAATTGGGGAAACTAAGAATGAGACCGGATTCAAGACAGGTGAGAGA
AATAATGACTTTTAAGAGAAATTCCCTAGAAAGAGATtttcttaagattt
ttttattctgaATGTGACACGTGACAAAACAAAGGATATTACAAATGAAA
CGAGATGCGAACTAAATAAAAAGAGCAAAACCAaacacacccctttctca
cagatcCACTGAGAACCTTTCCCAAtggaaaaattgtcaaaaatatcGTT
CCCTgttgaaaattatactccagTTTTTGTCCCCgcagaaaataatcaga
taagcaaatcctcactataaaatattgtgctaatatttccatccccactg
aattatctgtctaaaaaacaataaaattcaacTCCCCAGCCTTAAAAGGA
CATaaggaatatcaatcccaatcgagttttggtccattatttttaccccc
accggctgataaaatcccataggtctgtgagaagggggtatgtAAATCAA
GTGTACATCAAAGAATTTAACTAAACTTCATCCCTTTTTGTAGGTCCAAA
TTTCAGCAAACATAGACCATGGTGTCGGATTGTTTCGAATCAAGATTCAG
TGTCCACTAGAAGAAAGATTTGCTTTCTTTGTCCGAATCATTGGAAAAGG
TAAGTTCTATTTCAAACCTTAGGATAACAGGGTCACCAAATGGTTTTGTA
ACTGATCAGAGCCTTTTCATCTGGATGGAATAGAAAAAAATAGGCACCTT
TTTGGTAGCATGGGTGCAGTTTCTTGTTCGCCAGACTGGAAATAATGTGA
GAGTCTGATGTAAAAGATAGctctaaaatcatttttgcattAGATGTAAT
CTTATCGCGAGCAGTTCTTATAAGTAGTTTGAATGTTTTCTGatattaaa
tgtttttttataattcctTAAAAAACTTCTACCCTCAATAAGTGGAAGTT
ATGTGTGAAATCACCATTTATCCTAAATTTCTGTTTCCTTCCAGCGATCT
ACAAAACTTCTGGGCCATCTTTGAGGAAACTCACCAAATCAACAACACCT
TCAACAGAGATGGTGGAAACACCTCCCCCACGTGAACCGAATATCGATTA
TGTTGGACCAGTCACTCGATGGTTGAAACTGTTGCCAACAATCAAAGTAT
ATCCGACACTACCAAAGACGAAACGTATTGAATACCCCAATGAGATTGTT
GTTAAAACTACACAAAGAACTTTCACCTATCCATCAACCAAACAGTCCGT
AAACAAAAACGAAAAGATGGAAATTACAAACTCCCCGAATGAGATTTTAG
GAGACATTACACCAAAAATTACCAGCTCAGATTCAACAAACAAAGTTTCT
GAAAACAATAACGGAAAGACAGAACCTACAAACTCTCCCAATGAGATTGT
TGTAGAATCTTCTCCTCGGGTAGACTACGAAATCATGTCTCATCCACCAA
CCAAAGCTATTGGAAACAGTCTGATTGAGATGTCTTCACCAGAGATTGAC
TATTCAAATCGACCAACAGATTCTACAAAAgctgaacaaaaaaataacGT
TGAGTTTACGTCCTTATTGTCAATTGAAAATGAACATCAATCAACAAAGA
TTCCTGGAGTTGGTGAAAGTAAAGAGCAGGCAAAAACTTCTTCTCCAAAT
ATTGAATACAAATTAACAAGAGAAGCCAAAATTGATAACAATTCGATAGA
GACAACCTCGAATTCTAATCACAGAGGAGAGATCAGTAACGGAAGGAAGA
CACCAACGAGAACTACCAGCGTTGATGTAAACTCAATAGAGACATCATCC
AGAACGGATCTTCCGATCACAAGACATCATCCAAACAAATCCATCAAAGA
AGGTCATGCTATAGGTACAAACACTCTTACAGACAACAACGACATTGACT
TAACGATTGACTTAGAAACACCAACTCCACATACTTCAAGAGTATTTGAC
AAATTAGCAATTcgtcaaaaaacaacaaaaataccTAGTAATCTGTTTAC
AAACTACAAAGACTTATCTAACAATTTGGAGAATCCTACGAAAGAAATTT
CGACGGATGATATTTCAAATTGGAGACAAGTGGACAAAACCTTATCTCCA
ACCAGAACTTTAAACAGTAAAGATAATGATTTGAGCAACAACTATGAAAT
TTCTCCAAATGACAACATCCAAACGACgaatgacatttcaaaatggACAC
AAGTTGACAAGACCTCATCTCTCACCAAAACTCCAAACATTAAAGATACT
GActcaaacaaaaacttgaaaatttctccaacaGACAATCTCAAAAAGAC
AAACGACATTTCAAAATGGACACAAGTTGACAAGACCTCATCTCTTACAG
AAACTTCAAACAGAAAAGATATTAACTCAACCAACAACTTGGATATTTCT
CCAACTGAAAGCATCAAAGTTACTGATGATATTTCAAAATGGGTACCAAT
TGCAAAAACCTCATCTCCAACCAAAACTTTAAATAACAAAGATATTGACT
TGCCCAACAGCTTGGAGATTTCTTCAACAGACGACATCCAAACGAcgaat
gaaatttcaaaatgggcACAAGTTGACAAGACCTCATCTCcaacaaaaac
ttcaaacattaAAGATACTGACgcaaatgaaaatttgaaaacctctccaa
caaaaaataccaaaaatactGATGACAATTCAAAACGTACACAAGTTGAC
GAGACCTCATCTCTAACCaaaactccaaacaaaaaagataatggctcaaa
caaaaacttgaagATCTCTCCAACAGACAATCTCAAAAAGACTGATGAGA
ATTCAAAATGGACACAAGTTGACGAGACCTCATCTCCAACAAAAAGCATT
GACGCTTCGACTGAAACTCCAGAAGAATCTTTCTCGTCTTCTAATACTGA
GGGTGGTTTCATCGACTTATCTGATTTACTATGGGAATCATtaaaattct
ttgaagagaattATGAAAGTACAACTGAACAACCTAATGAGCTAAGTTCC
ACGCAAATGCCAACCACTgaagattttgaagatttctatACTTATTCTAG
GGGCACTAAGAAAGCTACTACAGATTCGATACCGTTTGAGACAATACCAA
CAATTTTTGTAGATTCTCACTCTTCAACTAAGAATTCTAACGTCAAAACT
AATCCAACTATTTTAACAGAAACCACTGACTTTACAGAGATTAAGACAAC
TTCAACTTCCAAAGATAAGACTCCATATTCAGTAAAACCTGAAACAACCG
GAAATAATATTGaaattgattctaaaaatcCTACTGATACAATCACCGGA
ACGCCAGATCCAATGAAAACAAGAGAACATATAACAGGAAAAACACTTAC
AGGTTCCTCAAACAACCTATTGTTTGGTATTTCAACGGCAACTTTGTCAC
AATCACCAACTGAAACTCCAGAAGAATCTTTCTCATCTTCTAACACTAAA
AATCACTTCATCGACTTATCCGATTTATTATGGGAATCATTAAAATTCTA
CGAGGAGAATTATGGAAGTACAACTGAACTACCTAATGAGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010806TCONS_00010806Clytia hemisphaericatranscript
TCONS_00010807TCONS_00010807Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010806-proteinTCONS_00010806-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:552665..558656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.01	0	0.01	0	0.21	0.11	0.09	0.08	0.07	0.05	0	0.01	0.03	0.12	0.11	0.23	1.96	2.43	0	0.21	10.21	9.37	0.6	1.03	2.79	2.7	0	0	0	0.01