XLOC_006010 (gene) - C. hemisphaerica

Overview


Name	XLOC_006010
Unique Name	XLOC_006010
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at sc0000109:517167..525301+

gene from alignment at sc0000109:517167..525301+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_006010 ID=XLOC_006010|Name=XLOC_006010|organism=Clytia hemisphaerica|type=gene|length=8135bp|location=Sequence derived from alignment at sc0000109:517167..525301+ (Clytia hemisphaerica)
CGTGACTTTGTTGACTCCCATTCGACTCGATCGGCATTTacagactggat
ggcgcgataaAGTGACCCGGTattatatggtaatatgcttttgcttaggc
ggactgtaaaacagatttttagttgttttggaagataaaaacagtatgaa
gcaatgtttttatttggaaataagggattgcaaatctgttattgatgttt
gtttctcattttcgACTATACCTTTcgactccaagtagttttaatattat
ttggatttttaacattttctctcaaaatggcgacctcgacAAACGCTCCT
AGTGTAGACTTCACTGTaattcactggactcagcgtcataaaaaattatc
aaaaagcaaagttcagccaaaagtagactctagtcaaCCTCCACTGTTAG
TTCTCAAAGAAGTCTTTTGGGAGGAAGTAAAGATGGCAATTATAAACTAA
TGTGTTGTAGATTGTCAAGTGATTATTGTCAGGCGATCACATGCaaacac
aggttgcaaaataaaagtctgaagacaaatcacgcttttactcgaaattc
tTATgggcttgttacatgacatttatttctgattggttcgaatttattga
cactaatagaGTTATTGACTGTAAGTTGTAAaacaagtaacatgggaata
aaatagcgaactttttcgagtaatcacatattTTGACTGCATTGGTATAA
TTTTACAACCCGTGTATTCATATCTTCAAAACCCTTAAACTACGaaatca
taaaaattctctCGTATGTTTTTTCAGAGTGCATCGTGTATGAGTAAGAA
GAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTCTTGACCA
GCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGATGGTAAG
AATGATCGATAGTTGATTGTATTGATGAATCGATTGAAATTCTAATGGTT
TATAAAATTCTTTGAGATATTTCGATTGATAGTCAGCTGTAGTAAAGGCC
GCTATGTCTTCCCGTGTACAggagcttgtgcaaagggattttatgattaa
ttcaccaatgacgtcagtttccattgCNTTTCAACTTTACCGCCGAAGCT
GCTACAGACACTCCTAAAGATGCAGACCTTAGAGCTGCATTTACAGCGCT
CAAAGGGTTAGGATATTTCAACACAGATATGGTTTATACTGCAGCCACCT
TTACAAACACTGGTAAGAAGAAAATATCAAAGTCTAAGTATATTTGACTT
AACATAACATCTAGTGTGGCTCCGCATCAATAACGGGGTTGTATTTTCCG
AAAATGATTGCGATGGTGTCGTCATTGGAAAAAAGATATGTGTGAATATA
AAGAAATCTATAAGAACttgaaaatgatgaagaaaaCTGAATTTCAActt
aaagtaaaaagtaaagtaAAATTATGAAAGAGCACCCCACTCAAGAAACT
TAAAAGAGATTAATAAAGTTAAATCAAATTAAAGTTCCTTGCCCCAATCT
AATACTATTAAAGATGAAAATATTCATGTTTGCAGGCAAGAAACGGTCCA
GTGTTAGTGGTGAACCAGACAACTCTGCAGCAACAAAGAAAATGTGTTTC
GAGAAAAACTCAAAGTCGTTCAAAAGCCGACTTAACGAACTAGCGCAACA
GAACAAGTTGCAGCAACCAACGTATGAGACGATTAGCACGACAAATGGAT
TTTTCACAACAGTCACTTTCAACGGGCGGCAATTCAAGGTAAAAACCGTT
TTGAAACTACTGCTAGTATTTATCCAAACTATTAAGGTTGAGGCCTTGGA
GCTAGAAATTCTATCTAtgaggcttttccagaaaaaatctgaatatgagc
agggtggaggatataactttttttggaaatgtatggacattgtgactttt
gaccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNcccggaccttattaggacccccccccgtttattaatttttga
aaaaaattcccagctaccaaaaagaaagttccttgttttactctaaaaaa
cctaaatttagtctattttgaccctttttagggtttttaaggTCCacttt
ccaaccccccccgtttatttggcacctaagagtacaaaccttaaggcttc
actttttcttacttgggaaaggttgaagattcaaaTCTTGCTCTTCGAGC
TTCAACCTCAATGATCCAAATCATCACGCTAGACTGCAGGTGCTCAGTAT
CCCAATGAGTCAAATAAGGGAGTATTTGATTTACAAAAAGAAGAGAGTCG
AATAGCCtagggtccacttaaagctatttttataTCGTTCGTGACTTTGT
TGACTCCCATTCGACTCGATCGGCATTTACAGACTGGATGGCACGATAAA
GTGACCCGGTATTAtgtggtaatatgcttttgcttaggcggactgtaaaa
cagatttttagttgttttggaaggtaaaaacagtatgaagcaatgttttt
atttggaaataagggattgcaaatcctggcaaatctgttattgatgtttg
tttctcattttcgATTATACCTTTCAATTACAAGAAGGTTTAtagttatt
tggatttttaacattttctctcaaaatggcgacctcgacAAACGCTCCTA
GTGTAGACTTCACTGGaattcactggactcagcgtcataaaaaattatca
aaaagcaaagttcagccaaaagtagactctagtcaaCCTCCACTGTTACA
TTGTTAGTTCTCAAAGAAGTCTTTTGGGAGGAAGTAAAGATGGCAATTAT
AAACTAATGTGTTGTAGATTGTCAAGTGATTATTGTCAGGCGATCACATG
Caaacacaggttgcaaaataaaagtctgaagacaaatcacgcttttactc
gaaattctTATgggcttgttacatgacatttatttctgattggttcgaat
gtATTGACACTAATAGAGTTATTGACTGTAAGTTGTAAaacaagtaacat
gggaataaaatagcgaactttttcgagtaatcacatattTTGACTGCATT
GGTATAATTTTACAACCCGTGTATTCATATCTTCAAAACCCTTAAACTAC
GaaatcataaaaattctctCGTATGTTTTTTCAGAGTGCATCGTGTATGA
GTAAGAAGAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTC
TTGACCAGCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGA
TGGTAAGAATGATCGATAGTTGATTGTATTGATGAATCGATTGAAATTCT
AATGGTTTATAAAATTCTTTGAGATATTTCGATTGATAGTCAGCTGTAGT
AAAGGCCGCTATGTCTTCCCGTGTACAggagcttgtgcaaagggatttta
tgattaattcaccaatgacgtcagtttccattgCAACGGGTGGTCACACC
CGGTCACACCCGGCCTcgcctctcaaattttgatcttctacattcaagga
acaatattcaatcataaaatctctttgcacaagctgctgcacacgggaag
ctttttcgcgacatagtgctggggtgaaacaaggcatgtcccaaatatat
tttgcgtgacgcacaccgcttcccattattcattacctttcatatatagc
tcaaaagaatcgtatcaacgagaggatttcgaaaagtgctgggtcaaaaa
tttacatcaaggcaatctcaagatatcggccaaaaactgattttgacgtt
ataaaatacatcgaaaaaacacgtcaaaaagactatttaaatgacgtcat
tattgaagaaaggcgataattccgattaacttactacaatcaaagcaaaa
ttttgactggatTTAAATTaacgattttaaaatatttcatgaaaaaaaaa
tttgaaaattcatgatgacgtcagcattttttgacgtattttaatttttc
cggacaacaaatgacgtcattcaaattttctgaaattttttgaacaaata
tttcagaatcattaatttacaactccagtcaaaatttggtgttgattgca
ttaataaaatagatcttatcggagtttttgatttttctaaaaaagcgatg
cattgcgggattgtttcgggagtattacaatagaaatctcttaggaattc
ctcgagggaattctattgtaatacccccgaaacaatcccacaatgcattg
ctgttttagaaaaataaaaaaatccgataaggtctattgaagttatcgct
gtttttcaataatgacgttatttgaatcttacttatgacgtgtttttcga
tgtattttataacgtcaaaatcaatttttgaccgatatcttgagattggc
ttaatgcaaatttttgacccagcgcTTTTCGAAATCCGCTCGttgatatg
attcttttgagctatataattatgaacgttaaggaataattggaagcggt
gcgcgtcacgcaaaatatatttgggacatgccttgtttcacccgagtgGC
CCCTACTACTGATGCAGTACCTTaatacacgaatattactaggctgcaag
tattcaacggccttgaaatttgcatgatctgaaattaacacgaatttttc
tgctttttcaaagaaacagcggccggttttaattaagggggtttttatta
acatgaAATTTTTCACTTCGTGTttataaaatgactagtaatattcgtgt
aataaggtattctTAAATAGACACCTTGGTATCATCGGGTGCAAATGCAA
GTTTTTTTTACTGTTAACTAGTCGTTCAGATACATCAAAATATACTAGTA
CCTACCCACCGATACCGAAAGGTACCTGACAcgattttgccaaatttgaa
tGACGATAAATGTCTATTTCTTTGATCGCATTATCGCATGTCACGACTAA
AAACCATCTGACAGTATTTGATTCAGATGAACTTGTATCGGACAGGTTGA
TAGGTTGTTTTAACGTTACACTTTTTATTTCACGAGGCATTCTTAATCAG
TACTTATAGAAATATTGAACacatttttgtcaattctagaTGTTGCAGAT
ATGATCAAAAGTGCTCGCGTAGGTTCAAACGTCATGAATTTATCCTTGAA
AAATCGTTTACAAGAGTATTGCCAACGTTTGAAGAAAGAACTACCCACCT
ATAAATCTGAATTGGGAGATAATGGTTTCTTTATGACCGTCTGTACCGTT
GATGAGATCGCCTACGAAGGTGGACCGGCCAAAACGCGAAAAGAAGCAGA
GAAAAATGCAGCGGAGGCAGCTCTTAAAGAACTCGGGTTAATGGCTGTTC
GAGAACAATAAATAGAGAATGGGTGACTACATTTCAGGGATAGGATATGG
AGAATTTTTAAACGGTGAACGGGTCGAAGCGGAGCACGACCGGCAgtgtg
ttttcaaaaatatactttatATCAGAAACTATGACAGCGTTATCGGACAT
GACTTTCAGTTATACATACAATTACTTTGATGATGTGTATTTGATAAAGT
GTACAGTTTACTGATTTGAACAATATCCGCCAGATTTCATTTTCCATGAT
GGTTTTTATTTGATGTATCTGATAtacggggaaaattttcgtcggggaaa
agtgacgaaattttggccaagtgacgaatatttttccccgacgaaagtTT
TCGCTGGCCTTAATGCgcttaccaactaccagcaagtgacgaatattttt
cctcgacgtaaattttccccgacgaaaattttccccgacgaaattttccc
cgataaggtatgtgcTGAAATATGATAAATGTAAATGTTATTCATAATGT
ATAAAGTTCACGATTCTTTATGACAAAACATTTTATTTCGATGCgatttt
attttccattttatgagtagagtattattttttttaaaggttttaaatag
AACATGACATGATTATAAtcaaaagtctaaaaata

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00010721	TCONS_00010721	Clytia hemisphaerica	transcript
TCONS_00010722	TCONS_00010722	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
Putative dsRNA binding protein	TCONS_00010722-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000109	supercontig	sc0000109:517167..525301 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.55	17.82	5.6	5.38	67.18	53.75	49.34	53.74	43.72	39.13	54.36	58.68	51.89	64.48	43.8	41.51	47.14	43.46	34.52	29.31	43.61	40.51	58.03	50.61	61.8	74.25	26.07	26.01	32.97	37.5

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XLOC_006010 (gene) - C. hemisphaerica