XLOC_005960 (gene) - C. hemisphaerica

Overview
NameXLOC_005960
Unique NameXLOC_005960
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000108:547832..551327+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005960 ID=XLOC_005960|Name=XLOC_005960|organism=Clytia hemisphaerica|type=gene|length=3496bp|location=Sequence derived from alignment at sc0000108:547832..551327+ (Clytia hemisphaerica)
GCGTGGCAAAATTTGACgagacttttgaattttttaaagagtATAAAAAA
CCTTCAATATGGAGTTTATTCAAACGACACACAGcagaatcaatcaatca
tcgaaaaaagaaggaagaaaaaaaaagaattttgttcACTCGAAAGAAAC
TGATAAAGAAACATAACATTACATTTCAAAGATTTGTACTGACTTTAAAA
CAAGATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAG
AGATTCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATT
TTATACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGG
TATGtgtgattttcttctttttataagaacaaaaagctTTCATGACCAAA
GCATGAGTTAcagacattttaaagctttaaaaaatctaaaacactCAAAT
TCTTAGGAAATCTaacaagaaatttaaatttgtaGAGCCACAGGAAGCAA
TGAAAACCATTTCACATCTAAAACCTACActtgattacaaaaatatttgg
tTGTCTCATATATCTTATTTACACAATGGTAAATTataataatatcaaaa
catgaTCACATGATACCAAGAAGTATAattcatttttgtttgttttaaaa
gtTCTAACGTAATTCAAAACAACATATCCAAAACCTACActtgattacaa
aaatatttggtTGTCTCGTATATCTTATTTACACAATGGTAAATTataat
aatatcaaaacatCATCACATGATACCAAGAAGTATAattcatttttgtt
tgttttaaaagtTCTAACGTGATTCAAAACAACAGAGTGATTAAACAGGG
TAGATTCTCAATTTTATATTTCTATCTAAAGGTTTTAACGTGGAGACAGT
AGAATACAAGAATATCAATTTCACCGTATGGGATGTTGGTGGTCAACATA
AGATTCGACCATTATGGAGACACTACTTCTCCAATACACAAGGTAAGTTG
TTTCAAACCTGCATGAAGTACTTAGCACCTTGACGCTTACGAATCAGTGT
GAGACAGAACAAAGGTTATCATGGTCAGAGGCCAAGCGTTAAACGCTCAA
AATGAAATTGCATGGATTAAGAATAACAAGCCCCTCCCATCCTGACAATT
TTAAAGGCGTACTTTTGTCTACTCCTGTTAATGTTGTTAATAAGTTGATT
TCAGATTCTGTCCAAGACTTATTTGGCCTCAAAAAGTCTGTTCAACATTC
ACGAAATCAAGTTAAAtgcttttttatgaaaatgtactctataagaatat
tcaagACGAAGCAATTATTTACAAAATACTATAATAATGTAATAATCATA
AATTTGGCAACCTAAGAATGCCACTTCCAGGgcattttagagcatttttg
cCTGTAAATAAATATCCACGGTGAAATGGATATACACCTATATCCAAAtt
agaaagaaaaatcaatgaTGCGTACCTTTTCTTTCTCACACACACAGGCA
TCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGAAGCCAAA
GAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATGCTTCACT
TCTTGTCTTTGCTAATAAACAGgtaaaaaacaaatagaaagtTGATAAAT
AGATTCAAGTACTAGTAAAGGTATTTTTAGGCCCTCCATCAAACGACCAT
ACCTCAACCCACTAAATTTCCAGCCAAAATGACCTATTGTGACGGTTGAG
TGCAACACTTGCACACACCTTTTTTGACGTGTTTTATATCTTGTTATTAC
GAAATTTATGACCCTGTGATGCAAGGGAGTCGATTTTTGTGACCCTGCCA
GAAACTCAATTGCTGTTTTATGGTTTCACTGTGAGAGACGAGGGTGTAAA
AGGACCCTTATGGTCCCCTTATGGCTCGCCTAAGTGCTCCCCCCGGAGGT
GCAACAGCTTTCAACACCAACAAACCTTTGGCTAAAGaaatacttaaaaa
aattaCCATTTTTTATAGGACTTACCAAACGCACTGAGTGCATCACAGAT
CACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAGTTGGTATACAC
AAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAGGACTTGATTGG
CTGGctgaagatttgaagaaaaagaaagtcatGTAATATTCGTATGCATA
CAAACAATGAGATATATTGTATATAGTTTAAAATCTGAAACACTAAAATC
ATTAATCACTAGCACCTGTAAATATAGCTTTCCTTAAATATTTATATAAA
ACTtgtaattcaaaaaaaatatatttcattaaaTTAGGCTTTTAAAATGG
CAagatattttttaaagtattcagAAAACAGCATTTTACGTAGTCCAGGA
TAATTGGATTTCGGCATTAAAGTTGATGCTGTAAACTCTTTTTATAATAA
CAGTTATACACTTAAGACCAGCGTCAAGCATGGAAAGAATAAGTTTAGGC
AAATCAAAGTTCAAGGAACCAAAAATAGGACGTCAAGTTTTAAAATGagt
taggcgagaccaatttaatttgttttcttacgggccaagctatccaaaaa
agagggtcggtcggtcggcggaaaaataaaaagtagaatttcaccaataa
aatctcctaaaaaggcagcaaaaactacgaCATCAaggatgaaatcaaaa
attgaacataaaattctcaaacctTGGAAAAACGACCGAAAATATGACAg
cctgtaaagcaatgaaaataaaaagtgtactaccaccaaaatcaatttta
tttttgttttgatttttggaatttcagggtcggtcgggcccgtaaaacaa
ctaattaaATTAGTCTCGCCTTACTCTTTTAAACAGGATAAAATCATTGA
GGTTCAAAGTGCCACAAAATTAACAACAGTCTAGGCTTATCTGACAGAAA
TTCacctgttcttataaaaaaagtttttaatttaaCTACATCAGACAGTT
TTAGCCTTTACAAAGAGTAACGAGAGAGATTAATACGAGAGATCTTATTA
GTGAGATTAAGTAAATCGgtataatcacgacgacgaacgaaaatttaaca
ggctagtgagtttcaaccaatcaaatttcgtattttaactagcctattac
atttttcgtccgtgattatcctggtatgctaaACCTCAGTATTATGAAAA
TGTCAATACAGTCAGTCTTCAAACCTATTTATCCAAGATCCTGAGTAATT
ATAATTATACCATTCTCATTATAGATTGACAActcaataaaaatcaaaaa
gcaaaatacataaaaaaacattaaagcTACATGCAGTTCTACTATTCTAC
TATTAAGGCTATCAAGGAAATGTTAGTTAACTGGGACACCATTCATCAAA
TCTAAGACAGCAACACCAACAAGCAGTGAAAGACTCAATGTTGAACACAT
TCAAGTCTTGGATTGAAAGAACGAATTCGGTTATATTATTTTTGGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010641TCONS_00010641Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010641-proteinTCONS_00010641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:547832..551327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62	0.45	0.62	0.51	8.43	5.57	4.13	4.13	5.08	8.05	15.43	2.74	9.25	6.56	7.3	3.5	1.65	1.34	12.83	13.91	2.83	2.48	1.86	2.16	3.91	7.91	4.92	2.7	14.23	8.37