XLOC_005269 (gene) - C. hemisphaerica

Overview
NameXLOC_005269
Unique NameXLOC_005269
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000093:431201..441299-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005269 ID=XLOC_005269|Name=XLOC_005269|organism=Clytia hemisphaerica|type=gene|length=10099bp|location=Sequence derived from alignment at sc0000093:431201..441299- (Clytia hemisphaerica)
AAACAATCGTCAAACTTTGATGTAAGAAGCGTAAGGATGTAATGTAAGCT
TGATCTTTTTTCCTAAAAGCAGAACTCTCTGACAATTTTTTTTGGATTCA
AATGTCAACTTCTATATTGGTTGGTAGAATATACCAAAGTATAGTTACTT
TTGATTGATTGGCTGAAATGCTATTACAGATTTATTGTTAATGATTGCGC
TTTACTTATTAAATTCGCAAAGAAGATCAATTGAAAAATCAATATGTCGA
AACTACCATACGAAGGTAAGGACAATTCCAATTTTACAAAACTTTACATA
AAAAAATCTAGCGTTCGTAGCTTCCTTACAATCATCTTATCAGAAAAGAA
CCCGGGTAGGTAGAGACGTGCCCGTTTTCTTTATAAGAACATCCAAAATT
TTTGAACGCTTTGGAAGTTCTTAACTATTTTGAGATTCATGCCTAAAAAT
GTTCTTAACATGTTCTTATTTTCATCATTTTGTGAGTATCTTTGTCCATT
TTCCTAAGAAATTGAATGTTACAGAGCCCGCAAAGCCTTAAAACATTCTG
ATTGTTCTGAACATTTTGGCCATCGAAGCATTATGTTTTGATATAGTCTG
TTCTTATAAAACGTGTATATGCGTATGCTCCCGTGAGTATCACTATGTAT
GGCTAATACACGGTGACCATAGTCTTTTTAAGAATACCGTGGCTTTCTTA
TATTATGCTGTGACGACAGAAAGCTATTCTATTCAACGCGTATCTAGGGA
AAACGAAAATAACTTGGGCAATCACCCAGGGTCGTGAATCGAAAATTTCC
GACCCCCTCGGAATTCCGGACCAAAAATTCCCTTACCCCTATGGAATTCC
GGGTCTAAATTTCGGTTACCCCTATGGAAATTCATACCATATTCCGACCC
CGAAATTCAAGTAACCCCTATGGAATTCCTGCCAAGAATTTCGGGTTACC
CCTATGGAATTCCAACCCAGAATTTCGAGTCACCTTCTATGGAATTCCTG
CCCAGAATTTCGGGTTACCCCTATGGAATTCCGACCCAGAATTTCAAGTC
ACCCCCTATGGAATTCCTGCCCAGAATTTCGGGTTACCCCTATGGAATTC
CGACCCAGAATTTCAAGTCACCCCTATGNGGGGGGGGGGGCTCAATAAAG
GCTACCGTAAATACCTTTGCATAAATTGTTGTCCTGTTGATTACAGAAAA
AGGTGACTGATCAATCAGGAAGAATCAAATGTTGTACACACAGTTACAAA
GAAATATCAGCGTGTAAAGGAGAGTTTGGATATAACTATGCTAAGTGAGT
GAATGTAGTGAGATTACTTTAATAGACTCCTGCCCTCCCCAGTCGAATAT
ATTAGCACACCAATCGTCTTTGGCGAGAAAAAAATTCTAAAATTTTATTT
CTTTTCCAAAATATAAACGTTCATTGAATTCGTGTACCTTATTACACAAA
TATTACTAGGCAAGTAATCAACGGCCTTGAAATTGATACACAAAGTAATA
TTCGTGTAATAAGGTAATGCAAAACAGGGGAAACTACCTGTTACGAATTT
TTGGTAACACATCAATAAATGACACAACCATGTTTAATCACTTTCGGTAA
AAGTGGTATCAAATTTCTTAGAAAGACTTGTGATAAATACTTGTAAACTA
TACGTTTTTATACCCATATAAGAACATAATGCTTCAATGGCCAGAATAGC
CAAAAGCTAAGAACATCTTTAGGCTTTGCAGACTCGAAAACACCCTTATT
CTTAGAAAACTGGACAAAAATACTCACAAAATGGTGAAAATAAAAACATG
ATGAGATTTTTTTAGGCTTAAAACTCAAAAAGTTAAAAACATCCGAAGGC
TTCAAAAAATTTTAATATTCTTATAAAAAACATCATAAATACTTGCAAAT
AATGCACTTACTAATAAGCTGACATATAAATGCTGATAAGAAAGAAATCC
GTACTTAGCTAAGAAATTACTTTTTGTACGCATTCAAACAATCGTCAAAC
TTTGATGTAAGAAGCGTAAGGATGTAATGTAAGCTTGATCTTTTTTCCTA
AAAGCAGAACTCTCTGACAATTTTTTTTGGATTCAAATGTCAACTTCTAT
ATTGGTTGGTAGAATATACCAAAGTATAGTTACTTTTGATTGATTGGCTG
AAATGCTATTACAGATTTATTGTTAATGATTGCGCTTTACTTATTAAATT
CGCAAAGAAGATCAATTGAAAAATCAATATGTCGAAACTACCATACGAAG
GTAAGGACAATTCCAATTTTACAAAACTTTACATAAAAAAATCTAGCGTT
CGTAGCTTCCTTACAATCATCTTATCAGAAAAGAAGCCGGGTAGGTAGAG
ACGTACCCGTTTTCTTTATAAGAACATCCAAAATTTTTGAACACTTCGGA
AGTTCTTAACTATTTTGAGTTTTAAGCCTTAAAATGTTCTTAACATGTTC
TTATTTTCATCATTTTGTGAGTATCTTTGTCCATTTTTCTAAGAAATTGA
ATGTTACAGAGCCCGCAAAGCCTATAAAACATTCTTAGATTGTTCTGAAC
ATTTTGGCCATCGAAGAATTTATGCTTTTATATAGTCTGTTATTATAAAA
AAACGTGTATACGCGTTTCCAAATCAATTTTGCTCCATCGTCCCAGGGAC
AAAATCAACTTGTCTTTAGGGTATTTCCCTCACTTTTTTGTCCCATGAAG
CAAAAAAAGAAACCATGGGACACGCACTTTTTTCTTGTGTTGGTGGGGGT
GGAGCATGTCCTTCACACTACCGATCGGCTATTAGATATCGAGGTTAAAT
TTAACAGAAAGCTAAGCTAAGCTGCGATGCTGACGGTATGCGTATACACG
AAAATTTTGGTTGAATTTTTCTAACACTACAAAGATGTTGAATTGTTATA
TTGAAGAGAAGCTTCAAGGTATTGAAGCTCGTTGTGTATTTCGCTCATTT
CTAGCTCACATTCACTTCCTTTGCTAAATACAAGGCAAAACACCCTGACA
GCAATTGCTCTTCTTAATTTCAAGAAATCTTTGAGGGATGAAATTTTTAG
AAACATTCCAAGTTTTTAAATAGTAAAATCAGATACTTGCTAGGTATAAA
AAAACAATTTGACAACACTCCTGACACCGCCAGAGATATCAACTGCTGGT
TATTTGACGCAGCAGGGATAACTAATGATTTAGAATTTAACTTTGTCAGC
AATGTAAATTTGTATTAATCAATTAATTAATTAATTAATTAATTAATACG
TATAGAGTAATTAGTTTCGACAACGTAAATAATTCATCACAAAAAAGACT
ACTACATCACAAGCCCATCACAAGGTGCAATAGTCAGAAGCTTTTAGATA
AAGATTTAACTCGAATAAGATCTTTTGCTGTGTTGTGTATGGTGATGTGA
ATAGTTGAAAAGATGTGGAAAAGGGATATATCCCATAGTGGGAAACACTG
TCTCTCCTTTTGGAAGAATTTCTATATACTAGAGTGTTCATGTATGTTTT
GGAGATTGAAGTTTCTAAGGGCTCTGACCATAGTGAATTTTTCAGAATTG
CCGTGTTTAAAATGTGTTTTCTGACTGATGTGACCAACAAAACTATGGCA
TGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTGAAAATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATTTTCCGCAAAATTTAAAATAGTTCAACTCTTTGCGGACAGTGTAAAGA
AATTTTGAAACAAAAAAGTTAATTACCCATTAAAACTAAGCACTTTTTGT
AAAACAGGGTGATGCAACATACTATTAACATCTTTTTAAAGTTCATAACG
TAATTTTTGCAATTAAATTCTTAATTACTCTTAAGGGATTCGATTAAAAA
GGCAATTCTTTGTTAAAAGTGTTAAGGAACCTGAAATATAACTTTTATGT
TCAAATACCAAAATAAATTTTTGGACTATGGTCAGAGCCCTTAAAGCCCG
AAGAACCTTTATTTACGCCGCTTTAGTTAAATTGACAGATTGAATCCAAT
GCTTTCTTTGTTTTCACCATTGATGTTTTCACACAGTATATTTTTCAAAA
TTTAGCAATGGAATTTTAACTTTCAATCTGCCGTCTATGTGAGAGCCACG
CGGGTCACGTGTCTTAGATAGGAAATTAAGTGGCATCATTTCCCATCTAG
CCACTGCAGGACTTTGAACTCATTGGAAAAGGAGACAGGGGTGTAAAATC
TTGATGTTATAAAGAGATGAGAGAAATCCGATACAACATATTTTTCTGGC
ATATAAAGTTACTGTCATTTTAACAACCATAAACTTTGATTTGAAATGGT
GTTTCAAACAGAGCTTTCGTTGTTTAATGTTAACGAAAGCAAATCTTTAT
CATAGTATTTTTTTCCAAGGGGAAAACCTTTCAGAGAGAAAGTGTCATTA
AAAACAAAAATATCATTTGCTTTTTTCATAACTTTTGACACCATCATCAC
ATTTCTAAGAAACACTGATTCTTTCCGGTAGCTAAAAAGTGAAATTATTG
CTAACATCATTATGGTGAAAGTTCTTTTACAGATGAAAGGGATTATTTGA
CTGGAATAATTGTTTATGTGTTCTAATTCATATTATGTGTTTGGTTTGGT
GACATGAAGTTTAAAGCAACGAAGCTAAAGTGAAATAAAGAATGCGCTAA
AGAACATTTTCATTTTAAAAGCAGCGCAAATCAAGCTCCACTTTTCCTTG
CCTGAGTAAGGTTGAAGATTCTCCTCTAGCACTTCGAGTTTTAAAATCAA
TTGTTATAGTGTCATTAATGCTTTTCTCAGATTCTAACTCAAACTAAATC
TTTCTTTATAGAGTTTTACGACGAGGAGATGAACACAGAAATTCATATTG
ACGGAGATGGTGTATCATCAGATAGACATGATCCAATACTGAAGATGAGA
GATTATCTGGACAGCAAACCTGGATATGCCGTTCTAACTAGCATTGTAAG
TATTGAAAAAAATTCATTCATAGTATATCAGCACGGATCCTTTAGTAAAT
GTGGATTCCAGTAATCTAACCTTTCTACTACTCCCAAATACTCCAGGAAA
TACAAGGGGGGACTCACGTTTGCAAACCCAAAATTCCAATTGACAGTAAA
CAAATCAAAAATGGAAGTACTCTATTAAAGATAGTGAATGATAGTAACGA
TAGTCCAATACTGAAGATGAGAGATTATTTTATAAGGAAATCTGAATGCT
GCACTAACTACCATTTTGTAAAAACGCCCCCTTCTCACAGACCCAGTGGG
AAGCCTTCCCCACTGGAAAAATTGGCCAAAACATTTTCCCCAGTGGAAGA
TTATACTCTAGTTTTTGTCCCCGCTGAAAATCCTCACTGCAAATTATTGT
GCTATTTTCTCCATCCCTATTGAATTCTCTGGCTAGAAAACAATGGAATT
CAAATCCCAAGCTATGAAAAGCATGGGGATATCAATATCGAGTTTTAGTT
CGTTATTTTTACCCCCACTGGCTGATAAAATCCCACCGAGTTTGTGAGAA
GGGGATGTGTAAGAGGTTCTAGACAAGGTTATCCCTCCAATAGTTTGTAT
TCATAGGATATGAAAATGTTTTGAATTATTTCAAGAGGGTAAATTCTCTT
TGCCTAGGGATAAACTTGTTTTGCCAAGGTATGCTTTTCCCAGTGATAAA
TTTGCTTTCCTCGGAGTAAATTTTGTTCTGCCAGAATTTCTGTGATGGCT
GTTCTTACTGTTTTCTCATTTCATGTTTTTCATGATTTATTCATCTATAT
TCTATTCTATATAGTTTTTCCTGACCGCTGGTTGGGTCATATTAGTCACG
TGGTCACAGAACAAAGAAAATCATTGGCAAGCAGAAAAAATAAGTGGTAT
CACATCTTTCTTTTTATTCGCAACCATTACACCTTGGGCTATGATGCTGT
TTTTGATGACGTTAATGGCATTAAGAAGGAAAAAGAAAATCAATGTTTGG
TTTTGTATTGTAAGTAAACATTTACACGTTTTTTTTTTTAAGAAACACAC
TTTTAAGAAATATGCTGAGGCTGAGAATGAGAAAATATTTATTTCTTATA
AATATAAATTAATATATTTTGTTTTTTTTAAGAACCTTCCAATCAAAACA
AATGTTTTTTTCCTTGCATGAAAAATAGACTGATTATATCAAAAAGTTTA
GAAACATGTAAAAAACATTTAAGGCTCAAAAAGCCGATTTTTTAAGAAAC
ACTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAACTAAAAACGTGTAT
ACACCCCTGTCTCTATACAGCCACATTTGAACTTTTTTCCACAGTGAGTA
TGAAGAATTTAATCAAACCCCAATGTGAATAAAAATTATATTGTTTCAAG
CTAAAAGAATTCAATAGAAATAATTTTTTTCATAGAATTTCAAATGAAAA
TAAAAACAAAGTCGATTTTTCAGTTTGATCAAAGCTGTAGGGTATTTTTC
CTACCTCAGACGTAATTTTGGCCAAATTTTCAAGCAGTTTTTATGCTATA
AGTACATTAATCCTTTTGCTTCGGAATTCATCATTTTAGATTGGCTATTT
CAGTGTTTTCTGGTCAATCATCGTTATATGTGCTTCGTCCGTATTATATC
ATAATGCAACTTTGGTATTATGTCAACGATATAGATGTAATGTCCTCAAA
TATGTGGCAGTAAGTCTTATAGTTTATAGCTCGGTTGGTACAGGGTGGTA
CAGGGTGGTACAATGTATAATGCTTTTTGTAGAGCGTTATTTGGGAGTCA
AAGACAGTATATTGTTTTTTTTATAACCCGTTCTTTGTGACCCGGTGAAT
TGTTGCTTGCAGAAATTTAATTGAATAAAATAATGAAAAGAAATTTTCTT
TCTGTAAACAAACCCCCTATATTTTTAGAATATTGCAAATCAAGCTGACA
ATATATTGCGGACATCTTTTCGATATATTGCCGGAACTCAGCAATATATT
TTCAATATATTGTGTAGTATATGTAGCCCTTAAGGATAAACTAACTCTAA
ACTGTCATAACCACTAGCAAAGGCATTCGAGAGGGGATGTCAGTTTAATA
TAGGTTCCTCTTGGAATAAAATTTCAGGCTACTTTTATTTCTCACCTGGG
ACATTTTTGGCGGTGTCTATTAGTTGGGAGTGTTATCAGTGGCGTTGTGG
GAAAATTTTTCTGTAGGGGCCAAAGTCAATTGTTTAAAAATAACGCCCCT
TCCCTAATTTTCCAAAGTGGTGCCCCCACCCACCAGTTTCTAAACTTTTA
CTAATTCATCTGCCTAGGCATAATGAGGAAGGAAATATTTAGTGGAGAAG
AGTAGTAGATATATCTTTGATGAATGGAAAAGGGAAAAACACAGAAAACA
GGCCCCACCATGGTTGGGGCCGACTAGAAAATTTTGAAAATCGACTACCA
AGATACCGCTAAATCAGTAAATAAAACTAGACAAATTTGACACTGTGTAA
TGCGAGCGAAGCGAGCGAAAAAATTGATGTCTTATGATTTCAAAATTGTT
GTCAGCAAATTGGTCTTGAGGAGCAGTTAGATTTTCATTTAATAATAGTA
TATTGTACACAAAAAAACTTATAAATTAGCTAGATTGCAAAGAAGTTACC
AAATAACTGTATAGCGAGCGACGCGAGCGAAAAAAATTGCAAGTATTTTA
AGACTCCTGGGGCGAAATTTAAGGCGCATAAAGTATGATTTTTAAAATTG
GGGCGTTTAAAAAAATCTCTTTTGGTGCCCCATGCTCTTCGGCGCCCCTT
CGAAAAAGCTCCGCTGGGGGGGGCATGGCCCCCCGGCCCCCCCTGCCACA
ACGCCACTGAGTGTTATGCCTTTTATTTAGAAAGTATTCAAAAACTTTTT
CTACTATTTTTCCGGATGCCCGGAAAATCGGTACGGACATTTGAAAGAAG
GACTGCTATCATCGTAATATATTTTTCTATTTCAGGCAAGTCTTGGTATA
ATTGGTGGTCTATCACTTGCAGTTCAGGCGTATCTTCACTTAAGAGTACT
AAAGAAAAATCGCTGTTGTAAAGAAAGCGCTCCATATAGCAAAATGACTA
AAGGAAGAGGGATTTGAAGCTGAAGAAATCTCCAAACCCCAAAGCAAAAA
AGTATTGATGTTTCCATAGCTGGTACCAAAACAGCAATACAACGTCCATT
TATCGTTCATAACATCCATCTCGCACCCGTTATAGCTAGTTTATGTATTC
GAGATGTATCGAAGGAGACGGTATACCTTATCGGGGAAAACTTCGTCGGG
GAAAATTTTCGTCGGGAAAAATTCGTTACTTGCTGGTAGTTGGTAAACGC
ATTAAGGGCGGGGGAAATTATCGTTGGGGAAAATATTCGTCACTTGTCCA
AAATTTCGTCACTTTTCCCCGACAAAGTTTTCCCCGATAAGGTATTTTCC
CCGATAAGGTATGGCATAGTTGGCATGTTCCCAAAATAGCTGGACAAAGG
TAAAAAAAAAAAGACTACGTCTGGTTAGGTGAGCAAAGGCGATATGAGCC
GTACTTCAACTATCGACTTTGTTTTATGTTAACTTCACTTACCGTTTCCC
TCGATCTCCTCCAATACATACACTTGCTAATATGGACATGGTGGTGTTAG
AAATGTTGTCAACCGTAAAGTAAAGAAACTGCACAACTATATAATTAAAT
GCATCCATAAACCCTTAACGACGCGATTTTCTTTTAAGGGGTCTTGTAAA
GTGGCGTGGTGGCAGGGTGCAGGTGGGCAAATGCCCCCCCCCCAGAGACC
GGCCCTAAAGGTTGATAGGTTGTATAGGGCTATGGCCCGAACGTACCTGG
TGAAAAAACATACATCTTTGTTTGGACGTGACGTTAGAATATTTAGGTAT
TTATAATAAAATTGAAAATATTTAGTTTTTATACTTATAGTGGAAAACAT
TATTAGGTTTTCATCTTAGAAAACCAAAGTCATTGTACATAAATATTACA
ATTGATGATCTGACTTACCTTAAGAAGCACTTCCAGGAAATGTTCGTACA
TGGGGGTGGAGGATATATAGTCTGGGGGGGGGGTAGTGAAAAATCTAAAT
TTGCCTTGTCTAGGAGAAAAATCTGCTCTGATTATGGGTGATTTTGAATG
TCCGGGGGTCAATTGATGCTTGTCCAGGGGGCTGAGAATTATACTGCCCG
TTGGGTCAAAAGTCACAATCTTCGGCGTGTAAAATTCAAAAAATGTTATA
TCCTCCTGCTCCCAATATTCAAATATTTTCTAGAAGAGTCCATTGTTCCA
TAACTTTATATTCAAAGTCTCTTTCTCTAGAGCTTCTCCGATATTGTAAT
AGGTGTAATCCTTTGTTGTTATTATGAATCCATTACCAAAACCAAAGTTA
TCAAAATCCCATTACTTTAATCCTATCGTTTCGAAAATCTCTAGAAAGCT
TCATATATAACACACTGGAGTAAGTGATTCGTCGGAGAAAGAAATGATAT
TCAACTTCGATGTTTATAAATGTGAAAAAAGAAATACATGAATGCTTGGA
CAACCAAACCAATAGTACAAAGGAAACCAAATGCCTAAAAGGTGGGAAAA
CATTTCTTATTAATGAACTATCGTGAAGTTGGGTAACATCAGTGGAGGCT
AACATGCATAGCCCTCAAATGAATGACCTGGCTGGTCCTTAAAATACAAA
GTTAAATCAAAACAAAAATGGTAGAGTAGAGCTGCGAGCGGAGCTGCGTA
GTTCATTTGTTTTGAAATTTTGCTCCTTTGATTGGTCATTCATTTGAGGG
CTGTGCATGTTAGCCTCCACTGATGCAAGTTACCCGATCTCACGGTATCA
AAATAAAAAACAAAATTAGGTGTTAGAAAAAAGTCAGCATCACAATCCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009409TCONS_00009409Clytia hemisphaericatranscript
TCONS_00009408TCONS_00009408Clytia hemisphaericatranscript
TCONS_00009407TCONS_00009407Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009409-proteinTCONS_00009409-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:431201..441299 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7	1.87	0.74	0.79	6.13	4.89	3.66	4.53	2.88	5.81	2.9	2.28	7.97	5.51	6.35	8.6	5.06	8.37	5.7	7.34	5.11	5.23	5.37	5.63	6.38	8.2	8.06	7.08	3.55	3.61