TCONS_00009407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009407
Unique NameTCONS_00009407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009407 ID=TCONS_00009407|Name=TCONS_00009407|organism=Clytia hemisphaerica|type=transcript|length=2412bp
AAACACTGTCTCTCCTTTTGGAAGAATTTCTATATACTAGAGTGTTCATA
GTTTTACGACGAGGAGATGAACACAGAAATTCATATTGACGGAGATGGTG
TATCATCAGATAGACATGATCCAATACTGAAGATGAGAGATTATCTGGAC
AGCAAACCTGGATATGCCGTTCTAACTAGCATTtttttcctGACCGCTGG
TTGGGTCATATTAGTCACGTGGTCACAGAACAAAGAAAATCATTGGCAAG
CAGAAAAAATAAGTGGTATCACATCTTTCTTTTTATTCGCAACCATTACA
CCTTGGGCTATGATgctgtttttgatgacgttAATGGCATTaagaaggaa
aaagaaaatcaatgttTGGTTTTGTATTATTGGCTATTTCAGTGTTTTCT
GGTCAATCATCGTTATATGTGCTTCGTCCGTATTATATCATAATGCAACT
TTGGTATTATGTCAACGATATAGATGTAATGTCCTCAAATATGTGGCAgC
AAGTCTTGGTATAATTGGTGGTCTATCACTTGCAGTTCAGGCGTATCTTC
ACTTAAGAGTACTAAAGAAAAATCGCTGTTGTAAAGAAAGCGCTCCATAT
AGCAAAATGACTAAAGGAAGAGGGATTTGAAGCTGAAGAAATCTCCAAAC
CCCAAAGCAAAAAAGTATTGATGTTTCCATAGCTGGTACCAAAACAGCAA
TACAACGTCCATTTATCGTTCATAACATCCATCTCGCACCCGTTATAGct
agtttatgtattcgagatgtatcgaaggagacggtataccttatcgggga
aaacttcgtcggggaaaattttcgtcgggaaaaattcgttacttgctggt
agttggtaaacgcattaagggcGGGGGAAATTATCGttggggaaaatatt
cgtcacttgtccaaaatttcgtcacttttccccgacaaagttttccccga
taaggtattttccccgataaggtatggcATAGTTGGCATGTTCCCAAAAT
AGCTGGacaaaggtaaaaaaaaaaagactacGTCTggttaggtgagcaaa
ggcgatatgaGCCGTActtcaactatcgactttgttttatGTTAACTTCA
CTTACCGTTTCCCTCGATCTCCTCCAATACATACACTTGCTAATATGGAC
ATGGTGGTGTTAGAAATGTTGTCAACCGTAAAGTAAAGAAACTGCACAAC
TATATAATTAAATGCATCCATAAACCCTTAACGACGCGATTTTCTTTTAA
GGGGTCTTGTAaagtggcgtggtggcagggtGCAGGTGGGcaaatgcccc
ccccccagagACCGGCCCTAAAGGTTGATAGGTTGTATAGGGCTATGGCC
CGAACGTACCTGGTGAAAAAACATACATCTTTGTTTGGACGTGACGTTAG
AATATTTAGGTATTtataataaaattgaaaatatttagttTTTATACTTA
TAGTGGAAAACATTATTAGGTTTTCATCTTAGAAAACCAAAGTCATTGTA
CATAAATATTACAATTGATGATCTGACTTACCTTAAGAAGCACTTCCAgg
aaatgttcgtacatgggggtggaggatatatagtctggggggggggtagt
gaaaaatctaaatttgcCTTGTCTAGGAGAAAAATCTGCTCTGATTAtgg
gtgattttgaatgtccgggggtcaattgatgcttgtccagggggctGAGA
ATTATACTGCCCGttgggtcaaaagtcacaatctTCGGCgtgtaaaattc
aaaaaatgttatatcctcctgCTCCcaatattcaaatattttctagAAGA
GTCCATTGTTCCATAACTTTATATTCAAAGTCTCTTTCTCTAGAGCTTCT
CCGATATTGTAATAGGTGTAATCCTTTGTTGTTATTATGAATCCATTACC
AAAACCAAAGTTATCAAAATCCCATTACTTTAATCCTATCGTTTCGAAAA
TCTCTAGAAAGCTTCATATATAACACACTGGAGTAAGTGATTCGTCGGAG
AAAGAAATGATATTCAACTTCGATGTTtataaatgtgaaaaaagaaaTAC
ATGAATGCTTGGACAACCAAACCAATAGTACAAAGGAAACCAAATGCCTA
AAAGGTGGGAAAACATTTCTTATTAATGAACTATCGTGAAGTTGGGTaac
atcagtggaggctaacatgcatagccctcaaatgaatgacctggctggtc
cttaaaatacaaagttaaatcaaaacaaaaatggtagagtagagctgcga
gcggagctgcgtagttcatttgttttgaaattttgctcctttgattggtc
attcatttgagggctgtgcatgttagcctccactgatgcaagttacccga
tctcacggtatcaaaataaaaaacaaaattaggTGTTAGAAAAAAGTCAG
CATCACAATCCT
Run BLAST on NCBI

transcript from alignment at sc0000093:431201..437857-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009407 ID=TCONS_00009407|Name=TCONS_00009407|organism=Clytia hemisphaerica|type=transcript|length=6657bp|location=Sequence derived from alignment at sc0000093:431201..437857- (Clytia hemisphaerica)
AAACACTGTCTCTCCTTTTGGAAGAATTTCTATATACTAGAGTGTTCATG
TATGTTTTGGAGATTGAAGTTTCTAAGGGCTCTGACCATAGTGAATTTTT
CAGAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTGACCAACAAAA
CTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTGAA
AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTTTCCGCAAAATTTAAAATAGTTCAACTCTTTGCGGACAG
TGTAAAGAAATTTTGAAACAAAAAAGTTAATTACCCATTAAAACTAAGCA
CTTTTTGTAAAACAGGGTGATGCAACATACTATTAACATCTTTTTAAAGT
TCATAACGTAATTTTTGCAATTAAATTCTTAATTACTCTTAAGGGATTCG
ATTAAAAAGGCAATTCTTTGTTAAAAGTGTTAAGGAACCTGAAATATAAC
TTTTATGTTCAAATACCAAAATAAATTTTTGGACTATGGTCAGAGCCCTT
AAAGCCCGAAGAACCTTTATTTACGCCGCTTTAGTTAAATTGACAGATTG
AATCCAATGCTTTCTTTGTTTTCACCATTGATGTTTTCACACAGTATATT
TTTCAAAATTTAGCAATGGAATTTTAACTTTCAATCTGCCGTCTATGTGA
GAGCCACGCGGGTCACGTGTCTTAGATAGGAAATTAAGTGGCATCATTTC
CCATCTAGCCACTGCAGGACTTTGAACTCATTGGAAAAGGAGACAGGGGT
GTAAAATCTTGATGTTATAAAGAGATGAGAGAAATCCGATACAACATATT
TTTCTGGCATATAAAGTTACTGTCATTTTAACAACCATAAACTTTGATTT
GAAATGGTGTTTCAAACAGAGCTTTCGTTGTTTAATGTTAACGAAAGCAA
ATCTTTATCATAGTATTTTTTTCCAAGGGGAAAACCTTTCAGAGAGAAAG
TGTCATTAAAAACAAAAATATCATTTGCTTTTTTCATAACTTTTGACACC
ATCATCACATTTCTAAGAAACACTGATTCTTTCCGGTAGCTAAAAAGTGA
AATTATTGCTAACATCATTATGGTGAAAGTTCTTTTACAGATGAAAGGGA
TTATTTGACTGGAATAATTGTTTATGTGTTCTAATTCATATTATGTGTTT
GGTTTGGTGACATGAAGTTTAAAGCAACGAAGCTAAAGTGAAATAAAGAA
TGCGCTAAAGAACATTTTCATTTTAAAAGCAGCGCAAATCAAGCTCCACT
TTTCCTTGCCTGAGTAAGGTTGAAGATTCTCCTCTAGCACTTCGAGTTTT
AAAATCAATTGTTATAGTGTCATTAATGCTTTTCTCAGATTCTAACTCAA
ACTAAATCTTTCTTTATAGAGTTTTACGACGAGGAGATGAACACAGAAAT
TCATATTGACGGAGATGGTGTATCATCAGATAGACATGATCCAATACTGA
AGATGAGAGATTATCTGGACAGCAAACCTGGATATGCCGTTCTAACTAGC
ATTGTAAGTATTGAAAAAAATTCATTCATAGTATATCAGCACGGATCCTT
TAGTAAATGTGGATTCCAGTAATCTAACCTTTCTACTACTCCCAAATACT
CCAGGAAATACAAGGGGGGACTCACGTTTGCAAACCCAAAATTCCAATTG
ACAGTAAACAAATCAAAAATGGAAGTACTCTATTAAAGATAGTGAATGAT
AGTAACGATAGTCCAATACTGAAGATGAGAGATTATTTTATAAGGAAATC
TGAATGCTGCACTAACTACCATTTTGTAAAAACGCCCCCTTCTCACAGAC
CCAGTGGGAAGCCTTCCCCACTGGAAAAATTGGCCAAAACATTTTCCCCA
GTGGAAGATTATACTCTAGTTTTTGTCCCCGCTGAAAATCCTCACTGCAA
ATTATTGTGCTATTTTCTCCATCCCTATTGAATTCTCTGGCTAGAAAACA
ATGGAATTCAAATCCCAAGCTATGAAAAGCATGGGGATATCAATATCGAG
TTTTAGTTCGTTATTTTTACCCCCACTGGCTGATAAAATCCCACCGAGTT
TGTGAGAAGGGGATGTGTAAGAGGTTCTAGACAAGGTTATCCCTCCAATA
GTTTGTATTCATAGGATATGAAAATGTTTTGAATTATTTCAAGAGGGTAA
ATTCTCTTTGCCTAGGGATAAACTTGTTTTGCCAAGGTATGCTTTTCCCA
GTGATAAATTTGCTTTCCTCGGAGTAAATTTTGTTCTGCCAGAATTTCTG
TGATGGCTGTTCTTACTGTTTTCTCATTTCATGTTTTTCATGATTTATTC
ATCTATATTCTATTCTATATAGTTTTTCCTGACCGCTGGTTGGGTCATAT
TAGTCACGTGGTCACAGAACAAAGAAAATCATTGGCAAGCAGAAAAAATA
AGTGGTATCACATCTTTCTTTTTATTCGCAACCATTACACCTTGGGCTAT
GATGCTGTTTTTGATGACGTTAATGGCATTAAGAAGGAAAAAGAAAATCA
ATGTTTGGTTTTGTATTGTAAGTAAACATTTACACGTTTTTTTTTTTAAG
AAACACACTTTTAAGAAATATGCTGAGGCTGAGAATGAGAAAATATTTAT
TTCTTATAAATATAAATTAATATATTTTGTTTTTTTTAAGAACCTTCCAA
TCAAAACAAATGTTTTTTTCCTTGCATGAAAAATAGACTGATTATATCAA
AAAGTTTAGAAACATGTAAAAAACATTTAAGGCTCAAAAAGCCGATTTTT
TAAGAAACACTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAACTAAAA
ACGTGTATACACCCCTGTCTCTATACAGCCACATTTGAACTTTTTTCCAC
AGTGAGTATGAAGAATTTAATCAAACCCCAATGTGAATAAAAATTATATT
GTTTCAAGCTAAAAGAATTCAATAGAAATAATTTTTTTCATAGAATTTCA
AATGAAAATAAAAACAAAGTCGATTTTTCAGTTTGATCAAAGCTGTAGGG
TATTTTTCCTACCTCAGACGTAATTTTGGCCAAATTTTCAAGCAGTTTTT
ATGCTATAAGTACATTAATCCTTTTGCTTCGGAATTCATCATTTTAGATT
GGCTATTTCAGTGTTTTCTGGTCAATCATCGTTATATGTGCTTCGTCCGT
ATTATATCATAATGCAACTTTGGTATTATGTCAACGATATAGATGTAATG
TCCTCAAATATGTGGCAGTAAGTCTTATAGTTTATAGCTCGGTTGGTACA
GGGTGGTACAGGGTGGTACAATGTATAATGCTTTTTGTAGAGCGTTATTT
GGGAGTCAAAGACAGTATATTGTTTTTTTTATAACCCGTTCTTTGTGACC
CGGTGAATTGTTGCTTGCAGAAATTTAATTGAATAAAATAATGAAAAGAA
ATTTTCTTTCTGTAAACAAACCCCCTATATTTTTAGAATATTGCAAATCA
AGCTGACAATATATTGCGGACATCTTTTCGATATATTGCCGGAACTCAGC
AATATATTTTCAATATATTGTGTAGTATATGTAGCCCTTAAGGATAAACT
AACTCTAAACTGTCATAACCACTAGCAAAGGCATTCGAGAGGGGATGTCA
GTTTAATATAGGTTCCTCTTGGAATAAAATTTCAGGCTACTTTTATTTCT
CACCTGGGACATTTTTGGCGGTGTCTATTAGTTGGGAGTGTTATCAGTGG
CGTTGTGGGAAAATTTTTCTGTAGGGGCCAAAGTCAATTGTTTAAAAATA
ACGCCCCTTCCCTAATTTTCCAAAGTGGTGCCCCCACCCACCAGTTTCTA
AACTTTTACTAATTCATCTGCCTAGGCATAATGAGGAAGGAAATATTTAG
TGGAGAAGAGTAGTAGATATATCTTTGATGAATGGAAAAGGGAAAAACAC
AGAAAACAGGCCCCACCATGGTTGGGGCCGACTAGAAAATTTTGAAAATC
GACTACCAAGATACCGCTAAATCAGTAAATAAAACTAGACAAATTTGACA
CTGTGTAATGCGAGCGAAGCGAGCGAAAAAATTGATGTCTTATGATTTCA
AAATTGTTGTCAGCAAATTGGTCTTGAGGAGCAGTTAGATTTTCATTTAA
TAATAGTATATTGTACACAAAAAAACTTATAAATTAGCTAGATTGCAAAG
AAGTTACCAAATAACTGTATAGCGAGCGACGCGAGCGAAAAAAATTGCAA
GTATTTTAAGACTCCTGGGGCGAAATTTAAGGCGCATAAAGTATGATTTT
TAAAATTGGGGCGTTTAAAAAAATCTCTTTTGGTGCCCCATGCTCTTCGG
CGCCCCTTCGAAAAAGCTCCGCTGGGGGGGGCATGGCCCCCCGGCCCCCC
CTGCCACAACGCCACTGAGTGTTATGCCTTTTATTTAGAAAGTATTCAAA
AACTTTTTCTACTATTTTTCCGGATGCCCGGAAAATCGGTACGGACATTT
GAAAGAAGGACTGCTATCATCGTAATATATTTTTCTATTTCAGGCAAGTC
TTGGTATAATTGGTGGTCTATCACTTGCAGTTCAGGCGTATCTTCACTTA
AGAGTACTAAAGAAAAATCGCTGTTGTAAAGAAAGCGCTCCATATAGCAA
AATGACTAAAGGAAGAGGGATTTGAAGCTGAAGAAATCTCCAAACCCCAA
AGCAAAAAAGTATTGATGTTTCCATAGCTGGTACCAAAACAGCAATACAA
CGTCCATTTATCGTTCATAACATCCATCTCGCACCCGTTATAGCTAGTTT
ATGTATTCGAGATGTATCGAAGGAGACGGTATACCTTATCGGGGAAAACT
TCGTCGGGGAAAATTTTCGTCGGGAAAAATTCGTTACTTGCTGGTAGTTG
GTAAACGCATTAAGGGCGGGGGAAATTATCGTTGGGGAAAATATTCGTCA
CTTGTCCAAAATTTCGTCACTTTTCCCCGACAAAGTTTTCCCCGATAAGG
TATTTTCCCCGATAAGGTATGGCATAGTTGGCATGTTCCCAAAATAGCTG
GACAAAGGTAAAAAAAAAAAGACTACGTCTGGTTAGGTGAGCAAAGGCGA
TATGAGCCGTACTTCAACTATCGACTTTGTTTTATGTTAACTTCACTTAC
CGTTTCCCTCGATCTCCTCCAATACATACACTTGCTAATATGGACATGGT
GGTGTTAGAAATGTTGTCAACCGTAAAGTAAAGAAACTGCACAACTATAT
AATTAAATGCATCCATAAACCCTTAACGACGCGATTTTCTTTTAAGGGGT
CTTGTAAAGTGGCGTGGTGGCAGGGTGCAGGTGGGCAAATGCCCCCCCCC
CAGAGACCGGCCCTAAAGGTTGATAGGTTGTATAGGGCTATGGCCCGAAC
GTACCTGGTGAAAAAACATACATCTTTGTTTGGACGTGACGTTAGAATAT
TTAGGTATTTATAATAAAATTGAAAATATTTAGTTTTTATACTTATAGTG
GAAAACATTATTAGGTTTTCATCTTAGAAAACCAAAGTCATTGTACATAA
ATATTACAATTGATGATCTGACTTACCTTAAGAAGCACTTCCAGGAAATG
TTCGTACATGGGGGTGGAGGATATATAGTCTGGGGGGGGGGTAGTGAAAA
ATCTAAATTTGCCTTGTCTAGGAGAAAAATCTGCTCTGATTATGGGTGAT
TTTGAATGTCCGGGGGTCAATTGATGCTTGTCCAGGGGGCTGAGAATTAT
ACTGCCCGTTGGGTCAAAAGTCACAATCTTCGGCGTGTAAAATTCAAAAA
ATGTTATATCCTCCTGCTCCCAATATTCAAATATTTTCTAGAAGAGTCCA
TTGTTCCATAACTTTATATTCAAAGTCTCTTTCTCTAGAGCTTCTCCGAT
ATTGTAATAGGTGTAATCCTTTGTTGTTATTATGAATCCATTACCAAAAC
CAAAGTTATCAAAATCCCATTACTTTAATCCTATCGTTTCGAAAATCTCT
AGAAAGCTTCATATATAACACACTGGAGTAAGTGATTCGTCGGAGAAAGA
AATGATATTCAACTTCGATGTTTATAAATGTGAAAAAAGAAATACATGAA
TGCTTGGACAACCAAACCAATAGTACAAAGGAAACCAAATGCCTAAAAGG
TGGGAAAACATTTCTTATTAATGAACTATCGTGAAGTTGGGTAACATCAG
TGGAGGCTAACATGCATAGCCCTCAAATGAATGACCTGGCTGGTCCTTAA
AATACAAAGTTAAATCAAAACAAAAATGGTAGAGTAGAGCTGCGAGCGGA
GCTGCGTAGTTCATTTGTTTTGAAATTTTGCTCCTTTGATTGGTCATTCA
TTTGAGGGCTGTGCATGTTAGCCTCCACTGATGCAAGTTACCCGATCTCA
CGGTATCAAAATAAAAAACAAAATTAGGTGTTAGAAAAAAGTCAGCATCA
CAATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005269XLOC_005269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009407-exon-sc0000093-1575043694:437809..437857TCONS_00009407-exon-sc0000093-1575043694:437809..437857Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1575043694:436105..436238TCONS_00009407-exon-sc0000093-1575043694:436105..436238Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1575043694:435091..435285TCONS_00009407-exon-sc0000093-1575043694:435091..435285Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1575043694:434391..434510TCONS_00009407-exon-sc0000093-1575043694:434391..434510Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1575043694:431201..433114TCONS_00009407-exon-sc0000093-1575043694:431201..433114Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1510915933:437809..437857TCONS_00009407-exon-sc0000093-1510915933:437809..437857Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1510915933:436105..436238TCONS_00009407-exon-sc0000093-1510915933:436105..436238Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1510915933:435091..435285TCONS_00009407-exon-sc0000093-1510915933:435091..435285Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1510915933:434391..434510TCONS_00009407-exon-sc0000093-1510915933:434391..434510Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1510915933:431201..433114TCONS_00009407-exon-sc0000093-1510915933:431201..433114Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1491911889:437809..437857TCONS_00009407-exon-sc0000093-1491911889:437809..437857Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1491911889:436105..436238TCONS_00009407-exon-sc0000093-1491911889:436105..436238Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1491911889:435091..435285TCONS_00009407-exon-sc0000093-1491911889:435091..435285Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1491911889:434391..434510TCONS_00009407-exon-sc0000093-1491911889:434391..434510Clytia hemisphaericaexon
TCONS_00009407-exon-sc0000093-1491911889:431201..433114TCONS_00009407-exon-sc0000093-1491911889:431201..433114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:431201..437857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147652	0.858513	0.152388	0.219471	0.300747	1.94293	0.108484	0.164386	0.938532	0	0.097416	0.669242	0	0	0	0	0.135358	0	0	0.230956	0	0	0	0	0.982405	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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