XLOC_004443 (gene) - C. hemisphaerica

Overview
NameXLOC_004443
Unique NameXLOC_004443
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000080:408048..411494+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004443 ID=XLOC_004443|Name=XLOC_004443|organism=Clytia hemisphaerica|type=gene|length=3447bp|location=Sequence derived from alignment at sc0000080:408048..411494+ (Clytia hemisphaerica)
CGGAAGCAGTGACTTTGAGTGTTTGAGGGAAGGTTTTTGTTGctgttttg
atattatttttcatgAGGGAAGTGTAGTGTGAGTGCTTGTATTAAAAGAT
GAATGAACACTCGTATGTGAAAATTTACATGTACAAAACTAACTGACCAT
TgacttttttttccatttcagaattttaagttaaaacagaaaaataagAG
GTCAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACA
ATTTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGG
AACATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACA
TTGATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATT
TTTGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGC
CTTTACATGCAGCTACTCTAGGTATGAAATCTAAAGACTCGACTATTCCT
GAAACACTGTGTTTTCGCTCATAATATCTGATACATGATTTCCATCTCAT
GACCAACACAAGGAATTCTCTTCAAGGACACAAATCTTGACCTTGTCGAT
TAACCCTTTCTGACCTTTTTCAGTTTGTTTAAATTTGGAGAATAAAAGAT
AAGTTTATCGAGTTTCTCGCAAATGTCTTTGTAAGGAAGCTTTTACTTAA
GGAACAATTATTactgaaatttctgaaaacaGGGGACATGCATGGGTTTT
TGTGGGGTTTTTGTTCATGATTGACTAAGCACAAAAAGTATCAGAATCAC
TGTATTTGTGCACTAATCATTTTAAAAAAACTGTCCGTTTTTCTGTTCTG
ATGTAGCGGAATGAGACAGATACAGTGATTAAGAAATAAGcttcgaaaag
aaaaaaatattttgacaattttgattaACAAGCCCACGCACTCTTAAAGG
GTTTTAATTTGAGAAGAAATCAAACAGAAAAAATGTCGAGAATTGTATCA
ATTTTCCCAAAGAGTCACGTGTGAATACATTTGACCTTTCAAGACAGGTC
ATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAGTGCCGGTAGC
ATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGCTATAAAACAT
TAGAACCAACTAACccattaaaattttcttttccagGAGGCAAACTAGAA
GTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGA
CGAAATGGGGTGCGTCGCTTCCGACCTCACAATGGATAGTGACATTCTTA
AAACCATAAACAGATACGCTAATGAATTGAATTTACGACGAGAATTAGAA
AGAGTTGCGGGACAACAAGCTGCAGAACAAAGCAGTAAACGGAACACTCT
TATATTCGAAACGAACGATATGGTCATTTCACGTTCGACAAGTGCTTTTA
CTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTCGAATATTTTA
CCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGCCCGTCAACAC
AGATACAACTTATCTAGTTCGGCATAATTCAGCACCCATACAAAAAACAT
CACCCAAGACTCGTAGATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAAT
TCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGCGAGTCTCAac
gtcacgtgactctggtgtTTTTGACGACGAGTCCGACATGGACAGTTTGA
CGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACAAACGGACCAC
TATAACATGATTTGAATCGAAAAGATGTGGCGATGATATAAATATCTACT
GTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTATGTAAATTAT
AAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAAAGAAACACGT
GTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGGTGTATAATTA
ATTTTCTAgctatttttttgtaaaaaaacaaaattctaaTGACACCTTAC
ATAAGAAATAAACGGCAAGAGGAAACCTTGAAAACAGCTTTCACAAATTT
ACTCTAGTTGCAGATAGCCCACATAAAAGGAAATCGTTATTGATGGGTCA
GTAATTAAATGTAATGCTCTCACAATTTAATTTTGTGACAGATATAGATT
GTAAGTAAATCATCTGCTGAGGTGCACCTGCTAAGCTAAATTGAGTTGAC
ATAGAGATAATCACTGTCTTTCGCTATGTCATACTCCTATTattggaaat
attttcaataaatatGGAACATTTTTCTGAGTTTAAAGACAGCATACGTA
GGTAACAGAAATTAAGTAACCCCTTTTTCAAACGCTGAATNTGACCTTTC
AAGACAGGTCATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAG
TGCCGGTAGCATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGC
TATAAAACATTAGAACCAACTAACccattaaaattttcttttccagGAGG
CAAACTAGAAGTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTC
TTGCGAAGGACGAAATGGGGTGCGTCGCTTCCGACCTCACCATGGATAGT
GACATTCTCAAAACCATAAACAGATACGCTAATGAATTGAATTTACGACG
AGAATTAGAACGAGTTGCCGGACAACAAGCTGTGGAACAAAGCAGTAAAC
GGAACACTCTTATATTCGAAACGAACGATATGGTCATTTCACGTTCGACA
AGTGCTTTTACTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTC
GAATATTTTACCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGC
CCGTCAACACAGATACAACTTATCTAGTTCGGCATAACTCAGCGCCCATA
CAAAAAACATCACCCAATACTCGTAGATCTGAGAGTTCTTCCGAAAGTTC
GGAACAGAATTCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGC
GAGTCTCAacgtcacgtgactctggtgtTTTTGACGACGAGTCCGACATG
GACAGTTTGACGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACA
AACGGACCACTATAACATGATTTGAATCGAAAAGATGTGGCGATGATATA
AATATCTACTGTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTA
TGTAAATTATAAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAA
AGAAACACGTGTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGG
TGTATAATTAATTTTCTAgctatttttttgtaaaaaaacaaaattctaaT
GACACCTTACATAAGAAATAAACGGCAAGAGGAAACCTTGAAAACAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007831TCONS_00007831Clytia hemisphaericatranscript
TCONS_00007832TCONS_00007832Clytia hemisphaericatranscript
TCONS_00007833TCONS_00007833Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007833-proteinTCONS_00007833-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:408048..411494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.86	0.81	0.14	0.19	22.25	15.36	14.9	12.75	5.46	7.75	4.74	7.87	28.94	20.86	13.11	25.45	26.14	48.11	52.11	57.62	24.79	22.62	9.14	10.02	9.54	13.72	4.46	2.62	3.6	3.88