TCONS_00007832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007832
Unique NameTCONS_00007832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007832 ID=TCONS_00007832|Name=TCONS_00007832|organism=Clytia hemisphaerica|type=transcript|length=1372bp
CGGAAGCAGTGACTTTGAGTGTTTGAGGGAAGGTTTTTGTTGctgttttg
atattatttttcatgAGGGAAGTGTAGTGTGAGTGCTTGTATTAAAAGAT
GAATGAACACTCGTATGTGAAAATTTACATGTACAAAACTAACTGACCAT
TgacttttttttccatttcagaattttaagttaaaacagaaaaataagAG
GTCAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACA
ATTTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGG
AACATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACA
TTGATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATT
TTTGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGC
CTTTACATGCAGCTACTCTAGGAGGCAAACTAGAAGTAGTGGAATACTTG
TTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGACGAAATGGGGTGCGT
CGCTTCCGACCTCACCATGGATAGTGACATTCTCAAAACCATAAACAGAT
ACGCTAATGAATTGAATTTACGACGAGAATTAGAACGAGTTGCCGGACAA
CAAGCTGTGGAACAAAGCAGTAAACGGAACACTCTTATATTCGAAACGAA
CGATATGGTCATTTCACGTTCGACAAGTGCTTTTACTACGTCATATGAAG
CGAGAGAAATAGAGGAACATCATTCGAATATTTTACCAATCACCGGACGA
AGTTTATTACAAATTCCCGGACAGCCCGTCAACACAGATACAACTTATCT
AGTTCGGCATAACTCAGCGCCCATACAAAAAACATCACCCAATACTCGTA
GATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAATTCGCCGAGCTTGACT
CGATTTTATAAACAAGAGGGTAAGCGAGTCTCAacgtcacgtgactctgg
tgtTTTTGACGACGAGTCCGACATGGACAGTTTGACGGACCAGCTCATCA
AAAGGAAGTTAAGTTCAATATCACAAACGGACCACTATAACATGATTTGA
ATCGAAAAGATGTGGCGATGATATAAATATCTACTGTAAATtgtattttt
ctggaaaaatgaTAAGATTGTTTTATGTAAATTATAAATATCTTAGGTGC
ATAAATTTCGTTTTCGTTTATTAAAAGAAACACGTGTAATTAAATTTACC
AGTCAAATTATTTATTGTATAATGGTGTATAATTAATTTTCTAgctattt
ttttgtaaaaaaacaaaattctaaTGACACCTTACATAAGAAATAAACGG
CAAGAGGAAACCTTGAAAACAG
Run BLAST on NCBI

transcript from alignment at sc0000080:408048..411494+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007832 ID=TCONS_00007832|Name=TCONS_00007832|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at sc0000080:408048..411494+ (Clytia hemisphaerica)
CGGAAGCAGTGACTTTGAGTGTTTGAGGGAAGGTTTTTGTTGctgttttg
atattatttttcatgAGGGAAGTGTAGTGTGAGTGCTTGTATTAAAAGAT
GAATGAACACTCGTATGTGAAAATTTACATGTACAAAACTAACTGACCAT
TgacttttttttccatttcagaattttaagttaaaacagaaaaataagAG
GTCAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACA
ATTTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGG
AACATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACA
TTGATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATT
TTTGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGC
CTTTACATGCAGCTACTCTAGGTATGAAATCTAAAGACTCGACTATTCCT
GAAACACTGTGTTTTCGCTCATAATATCTGATACATGATTTCCATCTCAT
GACCAACACAAGGAATTCTCTTCAAGGACACAAATCTTGACCTTGTCGAT
TAACCCTTTCTGACCTTTTTCAGTTTGTTTAAATTTGGAGAATAAAAGAT
AAGTTTATCGAGTTTCTCGCAAATGTCTTTGTAAGGAAGCTTTTACTTAA
GGAACAATTATTactgaaatttctgaaaacaGGGGACATGCATGGGTTTT
TGTGGGGTTTTTGTTCATGATTGACTAAGCACAAAAAGTATCAGAATCAC
TGTATTTGTGCACTAATCATTTTAAAAAAACTGTCCGTTTTTCTGTTCTG
ATGTAGCGGAATGAGACAGATACAGTGATTAAGAAATAAGcttcgaaaag
aaaaaaatattttgacaattttgattaACAAGCCCACGCACTCTTAAAGG
GTTTTAATTTGAGAAGAAATCAAACAGAAAAAATGTCGAGAATTGTATCA
ATTTTCCCAAAGAGTCACGTGTGAATACATTTGACCTTTCAAGACAGGTC
ATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAGTGCCGGTAGC
ATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGCTATAAAACAT
TAGAACCAACTAACccattaaaattttcttttccagGAGGCAAACTAGAA
GTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGA
CGAAATGGGGTGCGTCGCTTCCGACCTCACAATGGATAGTGACATTCTTA
AAACCATAAACAGATACGCTAATGAATTGAATTTACGACGAGAATTAGAA
AGAGTTGCGGGACAACAAGCTGCAGAACAAAGCAGTAAACGGAACACTCT
TATATTCGAAACGAACGATATGGTCATTTCACGTTCGACAAGTGCTTTTA
CTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTCGAATATTTTA
CCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGCCCGTCAACAC
AGATACAACTTATCTAGTTCGGCATAATTCAGCACCCATACAAAAAACAT
CACCCAAGACTCGTAGATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAAT
TCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGCGAGTCTCAac
gtcacgtgactctggtgtTTTTGACGACGAGTCCGACATGGACAGTTTGA
CGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACAAACGGACCAC
TATAACATGATTTGAATCGAAAAGATGTGGCGATGATATAAATATCTACT
GTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTATGTAAATTAT
AAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAAAGAAACACGT
GTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGGTGTATAATTA
ATTTTCTAgctatttttttgtaaaaaaacaaaattctaaTGACACCTTAC
ATAAGAAATAAACGGCAAGAGGAAACCTTGAAAACAGCTTTCACAAATTT
ACTCTAGTTGCAGATAGCCCACATAAAAGGAAATCGTTATTGATGGGTCA
GTAATTAAATGTAATGCTCTCACAATTTAATTTTGTGACAGATATAGATT
GTAAGTAAATCATCTGCTGAGGTGCACCTGCTAAGCTAAATTGAGTTGAC
ATAGAGATAATCACTGTCTTTCGCTATGTCATACTCCTATTattggaaat
attttcaataaatatGGAACATTTTTCTGAGTTTAAAGACAGCATACGTA
GGTAACAGAAATTAAGTAACCCCTTTTTCAAACGCTGAATNTGACCTTTC
AAGACAGGTCATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAG
TGCCGGTAGCATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGC
TATAAAACATTAGAACCAACTAACccattaaaattttcttttccagGAGG
CAAACTAGAAGTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTC
TTGCGAAGGACGAAATGGGGTGCGTCGCTTCCGACCTCACCATGGATAGT
GACATTCTCAAAACCATAAACAGATACGCTAATGAATTGAATTTACGACG
AGAATTAGAACGAGTTGCCGGACAACAAGCTGTGGAACAAAGCAGTAAAC
GGAACACTCTTATATTCGAAACGAACGATATGGTCATTTCACGTTCGACA
AGTGCTTTTACTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTC
GAATATTTTACCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGC
CCGTCAACACAGATACAACTTATCTAGTTCGGCATAACTCAGCGCCCATA
CAAAAAACATCACCCAATACTCGTAGATCTGAGAGTTCTTCCGAAAGTTC
GGAACAGAATTCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGC
GAGTCTCAacgtcacgtgactctggtgtTTTTGACGACGAGTCCGACATG
GACAGTTTGACGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACA
AACGGACCACTATAACATGATTTGAATCGAAAAGATGTGGCGATGATATA
AATATCTACTGTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTA
TGTAAATTATAAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAA
AGAAACACGTGTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGG
TGTATAATTAATTTTCTAgctatttttttgtaaaaaaacaaaattctaaT
GACACCTTACATAAGAAATAAACGGCAAGAGGAAACCTTGAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004443XLOC_004443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007832-exon-sc0000080-1491911889:408048..408518TCONS_00007832-exon-sc0000080-1491911889:408048..408518Clytia hemisphaericaexon
TCONS_00007832-exon-sc0000080-1510915933:408048..408518TCONS_00007832-exon-sc0000080-1510915933:408048..408518Clytia hemisphaericaexon
TCONS_00007832-exon-sc0000080-1575043694:408048..408518TCONS_00007832-exon-sc0000080-1575043694:408048..408518Clytia hemisphaericaexon
TCONS_00007832-exon-sc0000080-1491911889:410594..411494TCONS_00007832-exon-sc0000080-1491911889:410594..411494Clytia hemisphaericaexon
TCONS_00007832-exon-sc0000080-1510915933:410594..411494TCONS_00007832-exon-sc0000080-1510915933:410594..411494Clytia hemisphaericaexon
TCONS_00007832-exon-sc0000080-1575043694:410594..411494TCONS_00007832-exon-sc0000080-1575043694:410594..411494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:408048..411494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119879	0.287379	0	0	7.55789	5.61094	5.07625	4.56489	1.53193	0.566845	1.40014	2.20438	7.43755	5.12911	6.25489	9.09346	12.2224	19.2707	21.1147	26.9769	12.0612	9.39448	3.14878	4.89154	0.649783	1.83421	1.68713	1.03974	1.95185	1.3418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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