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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007831 ID=TCONS_00007831|Name=TCONS_00007831|organism=Clytia hemisphaerica|type=transcript|length=1348bp
CGGAAGCAGTGACTTTGAGTGTTTGAGGGAAGGTTTTTGTTGctgttttg
atattatttttcatgAGGGAAGTGTAGTGTGAGTGCTTGTATTAAAAGAT
GAATGAACACTCGTATGTGAAAATTTACATGTACAAAACTAACTGACCAT
TgacttttttttccatttcagaattttaagttaaaacagaaaaataagAG
GTCAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACA
ATTTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGG
AACATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACA
TTGATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATT
TTTGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGC
CTTTACATGCAGCTACTCTAGGAGGCAAACTAGAAGTAGTGGAATACTTG
TTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGACGAAATGGGGTGCGT
CGCTTCCGACCTCACAATGGATAGTGACATTCTTAAAACCATAAACAGAT
ACGCTAATGAATTGAATTTACGACGAGAATTAGAAAGAGTTGCGGGACAA
CAAGCTGCAGAACAAAGCAGTAAACGGAACACTCTTATATTCGAAACGAA
CGATATGGTCATTTCACGTTCGACAAGTGCTTTTACTACGTCATATGAAG
CGAGAGAAATAGAGGAACATCATTCGAATATTTTACCAATCACCGGACGA
AGTTTATTACAAATTCCCGGACAGCCCGTCAACACAGATACAACTTATCT
AGTTCGGCATAATTCAGCACCCATACAAAAAACATCACCCAAGACTCGTA
GATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAATTCGCCGAGCTTGACT
CGATTTTATAAACAAGAGGGTAAGCGAGTCTCAacgtcacgtgactctgg
tgtTTTTGACGACGAGTCCGACATGGACAGTTTGACGGACCAGCTCATCA
AAAGGAAGTTAAGTTCAATATCACAAACGGACCACTATAACATGATTTGA
ATCGAAAAGATGTGGCGATGATATAAATATCTACTGTAAATtgtattttt
ctggaaaaatgaTAAGATTGTTTTATGTAAATTATAAATATCTTAGGTGC
ATAAATTTCGTTTTCGTTTATTAAAAGAAACACGTGTAATTAAATTTACC
AGTCAAATTATTTATTGTATAATGGTGTATAATTAATTTTCTAgctattt
ttttgtaaaaaaacaaaattctaaTGACACCTTACATAAGAAATAAAC Run BLAST on NCBI transcript from alignment at sc0000080:408048..410110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007831 ID=TCONS_00007831|Name=TCONS_00007831|organism=Clytia hemisphaerica|type=transcript|length=2063bp|location=Sequence derived from alignment at sc0000080:408048..410110+ (Clytia hemisphaerica)
CGGAAGCAGTGACTTTGAGTGTTTGAGGGAAGGTTTTTGTTGctgttttg
atattatttttcatgAGGGAAGTGTAGTGTGAGTGCTTGTATTAAAAGAT
GAATGAACACTCGTATGTGAAAATTTACATGTACAAAACTAACTGACCAT
TgacttttttttccatttcagaattttaagttaaaacagaaaaataagAG
GTCAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACA
ATTTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGG
AACATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACA
TTGATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATT
TTTGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGC
CTTTACATGCAGCTACTCTAGGTATGAAATCTAAAGACTCGACTATTCCT
GAAACACTGTGTTTTCGCTCATAATATCTGATACATGATTTCCATCTCAT
GACCAACACAAGGAATTCTCTTCAAGGACACAAATCTTGACCTTGTCGAT
TAACCCTTTCTGACCTTTTTCAGTTTGTTTAAATTTGGAGAATAAAAGAT
AAGTTTATCGAGTTTCTCGCAAATGTCTTTGTAAGGAAGCTTTTACTTAA
GGAACAATTATTactgaaatttctgaaaacaGGGGACATGCATGGGTTTT
TGTGGGGTTTTTGTTCATGATTGACTAAGCACAAAAAGTATCAGAATCAC
TGTATTTGTGCACTAATCATTTTAAAAAAACTGTCCGTTTTTCTGTTCTG
ATGTAGCGGAATGAGACAGATACAGTGATTAAGAAATAAGcttcgaaaag
aaaaaaatattttgacaattttgattaACAAGCCCACGCACTCTTAAAGG
GTTTTAATTTGAGAAGAAATCAAACAGAAAAAATGTCGAGAATTGTATCA
ATTTTCCCAAAGAGTCACGTGTGAATACATTTGACCTTTCAAGACAGGTC
ATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAGTGCCGGTAGC
ATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGCTATAAAACAT
TAGAACCAACTAACccattaaaattttcttttccagGAGGCAAACTAGAA
GTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGA
CGAAATGGGGTGCGTCGCTTCCGACCTCACAATGGATAGTGACATTCTTA
AAACCATAAACAGATACGCTAATGAATTGAATTTACGACGAGAATTAGAA
AGAGTTGCGGGACAACAAGCTGCAGAACAAAGCAGTAAACGGAACACTCT
TATATTCGAAACGAACGATATGGTCATTTCACGTTCGACAAGTGCTTTTA
CTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTCGAATATTTTA
CCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGCCCGTCAACAC
AGATACAACTTATCTAGTTCGGCATAATTCAGCACCCATACAAAAAACAT
CACCCAAGACTCGTAGATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAAT
TCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGCGAGTCTCAac
gtcacgtgactctggtgtTTTTGACGACGAGTCCGACATGGACAGTTTGA
CGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACAAACGGACCAC
TATAACATGATTTGAATCGAAAAGATGTGGCGATGATATAAATATCTACT
GTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTATGTAAATTAT
AAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAAAGAAACACGT
GTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGGTGTATAATTA
ATTTTCTAgctatttttttgtaaaaaaacaaaattctaaTGACACCTTAC
ATAAGAAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007831-exon-sc0000080-1491911889:408048..408518 | TCONS_00007831-exon-sc0000080-1491911889:408048..408518 | Clytia hemisphaerica | exon |
| TCONS_00007831-exon-sc0000080-1510915933:408048..408518 | TCONS_00007831-exon-sc0000080-1510915933:408048..408518 | Clytia hemisphaerica | exon |
| TCONS_00007831-exon-sc0000080-1575043694:408048..408518 | TCONS_00007831-exon-sc0000080-1575043694:408048..408518 | Clytia hemisphaerica | exon |
| TCONS_00007831-exon-sc0000080-1491911889:409234..410110 | TCONS_00007831-exon-sc0000080-1491911889:409234..410110 | Clytia hemisphaerica | exon |
| TCONS_00007831-exon-sc0000080-1510915933:409234..410110 | TCONS_00007831-exon-sc0000080-1510915933:409234..410110 | Clytia hemisphaerica | exon |
| TCONS_00007831-exon-sc0000080-1575043694:409234..410110 | TCONS_00007831-exon-sc0000080-1575043694:409234..410110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:408048..410110 + |
Blast
The following BLAST results are available for this feature:
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