XLOC_003856 (gene) - C. hemisphaerica

Overview
NameXLOC_003856
Unique NameXLOC_003856
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000072:262274..267684+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003856 ID=XLOC_003856|Name=XLOC_003856|organism=Clytia hemisphaerica|type=gene|length=5411bp|location=Sequence derived from alignment at sc0000072:262274..267684+ (Clytia hemisphaerica)
gccaaattaaatccacgccaaaattaatccactggATGTTGCCACTAAAA AAAACCTGTATCTTTTCTTATTAAGTTTAGACCAAAATTAAGCtcactgt tcttataaataataacaaacttttttctattttaaaaagtgtatatttga aaattgatcaaaataaatttgaaaaagatgaCGGTATATCAATGTCTAGG CTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGTGCAGGGAT TATGTAAGTAACTTTTTCTAcatattttatgttttcttataaacatTTAA TTTATATAATATAAGCATTATgtatatctaggctcagatatggcaaaAAT ATAAATGCGTAGTTAACCCAGGGGAGAGGGGGTACTTGTGactaaaacaa caaaaatgacaaatttttacTCTAAAAGGtacaattttggattttttgca TGNATAAATCTGAAAAAGATGACGGTATATCAATGTCTAGGCTTATTTAT GCTCCTTTGTCAACTCTTCCAGTTTACAGCTGCGCAGGAATTATGTAAGT AACTTTTTCTACATTTATATAAGCATTATATCTAGGTTcagatatggcaa aaatttgaaTGCGTAGTTAACCCAGGGGCGGGGGTACTTGTGACTAAAAC ACTCTCAAAGGGTCTCGAAAATGACAATTAAATCAAAAGgtacaattttt gattttttgcatgctCGAACGTGCATCTCACTTCGCAAACCTAGTACACC CCCCCGCGATATTGAACTAATTAATGAAAATGTTATGCTGGTGGAGGTAT TGGCCGGCCTGGACTTAAGAGCCTGTAGTAGATGGATACAGTATTTTTAT TGCTGCACGAACAATAAATAGACACAGGTAGTATGTTCTTATAATTTGAA ATTCTAATTCTTTTCAGCTGTTCCTACGACCACCACAACAACAGCTGCTC CTACAACCACCACCACAACAACAGCTGCTCCTACGACCACCACAACAACA GCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTACAACAACCAC CACAACAACAGCCGCCCCTCCtacaacaaccacaacaacagCTGCCCCTA CAACCaccaccacaacaacaacaactgcCCCTCCTACAACCACCACAACA ACATCCACCCCTCCTACAACAACCACCACAACAACAGCCGCCCCTCCtac aacaaccacaacaacagCTGCTCCTACGaccaccacaacaacaacaacca cgaCCACAACAACAGCCGTCCCTCCTACGACCACCACAACAACAGCCGTC CCTCCTACGACCACTACAACAACAGCCTCCCCTCCTACGACCACCACAAC AACAGCCGTCCCTCATACAaccaccacaacaacaacaggCGTCCCTCCTA CAATCTCTTCATCAGGTACTTTTGATTATCTGATCGTTAAGGGGCATTGT TATTTCGCGATACTAGGACTGAAATGAATATCTCAAACACCTTTATAAAC CCTACACTAAGCTCCGCCTATGATCGAAGTGATATCATTGAAGAAGAAAC TATTGAAGCGTTAAAAGTTTGCCTAACGTCCAACGGGtctacagtgcact ttttcaaaaaatctttatccagctggcacacaacgttgtttcaatgttca tctaCTTTCGGGTATCTAATAACCGTCCCCccctaattaatttttcgaaa attttccacccaggacatttttattccaaccccctgcttattaatttttg ggaaattgtttttgaaaattccctcttttgtcctaattcagctgtattag cctccttttcaaaatttttccacccaggacatttttgttccaaccccccc ccccccccacctgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAaccttattaagtt ttgagattttttccacctCCCCCCCTCCGCTAATTCCAATCCCcttggct attaggtacccgagagtaatgtTTACAACGTCCATGTAACGTTAAAAacg aacgttaaaacaacgtcacGTGCCAGTTAGATATGGAGCGTTTAATGAGT GAACGAGGCTCTCGTGCCTGAAACGAGGGGGTCtcagtctgaatcgcaga ccttatagatatacttccttaGTTTGATTCGCAAACCTCGCTAGAGGATG AGAAGAAGCCTAATACTTCCTATATAAAAAACTTTctctataagaaactc ttttcaCTATAGGATGAACAGAAGTCTAGGACCCAGTTCAAATCCTAGCT CCTTCAAATGTTCCGCTAAATTGATAAACAAGATACCACGTATTATATGA TACCTGTGATTGAAAAAGGGGTTGTATCTATTTAGAACTTAACAACACTG TCTCGGTGAGATGTGATGACGAAAAGATGACCATTTTTATTCCCAAAAGT GAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATATTTCATGGAA TGATTCTACTTGTGGACCAAGTGAAAAATCCAATAAAACACATTTGGTCA TGGTGGCTGGTTATTCCTCTTGTGGCACTAAAGCTGTGGATGATGGGAAA AACGTCGTTTTTCGAAATAAGGTAACTAAGCATATAATCATTATTGTTTC TCGAATAATCTCTAAGACGAACACCGGTTGTAAAAACTTTATTAAAAACA ATATTAGGTTCTCCTAAATATTTTAAGAGGAAATGCATTAAGAGAACTAA TTTTATCGGGgagcaaaaattgtaaaaaatttagatttgcCGAGAACTTA TTATGTCGAGcaataattttaatttcaaaattgtcgTAATTTTTCAAAGC ATCCCCCTAATTTTTATATTAAACGTTCATTATAAAGTTAGAAGAAAGAT CTTatgttgaaaataaattgccaaaattaTTTGTCAACGAATTAATTCTT CTTCGTAATTTTTGCTCCTATCGCCAAAATTAGAtccctaaatattttca atttggaAAAAGCAGttttgggctcttccagaaaatgccCATACAAGGca ggtggaggatatagtgtccgcaGGGGAGGGGGTAGTGAGAAAAGTACAAC ATTTGCCTTATCTGGGGTAaactaatgcttgtccgggggggggggggggg cgggccctgctgtccgggggggggggggggggggaaaaagggaaaaattt gCCTTATTGGGGGTAAAtaaacccccgggggggggggggggggggaaaaa gggaaaaatttgCCTTATTGGGGGTAAAtaaacccccggggggggggggg ggggggctagacctgctgtccggggggagagtcaaaagtcacaatgtccg ggggtaaatttccaaaaaatgtcatatcCTCCGCCCCCTCccgtattcaa tttttttctgcaaaagccCTTAGCGGAATTGGACAAAGATTCTTAATACA ATTTGTTTCCAAACAAGcatttttactttatataaaaatttgtccgaTTT TTTTGGACACACGGtatgttcgaattagagaaactTGAACGACtttaaac aataaattaaataataaattttccaaaattttttcttttaggtTTCTATC AGCAAAAATACAACACATATTACTGAAAAACCTCATCTCGAGACAGCTAG TAGCTATGTTAGTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTAGTTA ATGTTTCACAAGAAGATGGATTCAATGTTACAATGCCTGATTCGGTGGTT GCAAAAACAAGTAAGAAGACTGACTTATTGAcctttactcgacgtttttt cgtgactttttttacatgaatctgccAATAAGAACGTGTATTCCCGTCTG AGAGTTCAAAATCTAGTGAACCTGTCTCAAAAGGGTTcagaaatccaatg attgtattgACCTCTagtaattaaaatttttaaatccaatttaataaaat ataaaGATCCCTCGTGTAAAAGTTACCAAAAACACAAAGATAGGGGTTAC TCGGACAGGAAATTATATACACGAGACGCATTCCCTGCGTATCGCCTATC AAATGCATGTAGCCTACTAACTCCTCTCTGGCACCTAATAAGTCCAGCAG GGATGTAAAATTTCGGGATATCTTTCAGGTTCGACTGACGAATTCACCGT CTCGATGAATCTCTTNTGTAAAATTTCGGGATATCTTTCAGGTTCGACTG ACGAATTCACCGTGTCGATGAATCTCTTCAAATCAGAAGATTTCAACAAA ATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTCAATTTGGA AATCGAACTGGTAACTAGTTCCAGCCTCTTTATCATACCTCAAAATTGTC ACGCAACGGCTGAATCAAATCGAGATAATTCTCTCAAAGAAGACATCGTC ATAGACAGGTATTTAATGAAAAcagtaaaggcttggggacacgagaattt ttttcgcgttggtgcaatgcaaatgctctatcccaccaacctgaaacgct ttctcgcgTCTTCAcctcatttttctttctaccaataaaagtgaaaccTG ACTTTTCTTCTTCCTGACTTTACGctgacaaaatcagcgtgtcttctggg tatttccctcactttttgtcccgtTAAACGGGATCCAGGGCCTATTCACC GCGATTTCCATGGACAAAAAGGGGTATGTAAGGAGTGGAGATTACGATCG GGAactctttgtttcagctaatgaCCCCTTAGACCATGTTCATACATTAA GGTTTCTTATCACTTGAGTATAGATTTGGTTACGACAAGAAATGGTCATG TTCGTTTCGAGAAATGTTTCGGTGCAGTTTCGTTCCGATGAATAAAGTGG AGTGTAACTGATTCGatacgtttttctttttagcgtctttttttttgaca tttcaaatttttggtgtGCACGCAGGCTTTTAGAACGTTTCATTTCGAAA CAATGTGGAACATCAACGTCTGAACATTACAATGTCTTAGACGATTTAGC CACCACTAATATCAACTTCTCGATCACATACAGCATAATTGATTTAAAAC TTATCAACTATTCTCAATTTCTTAGATGTCCAACACctggtcacgatttc caagaagaAAAACCAGCTGACAACGGCAAGAAATTTCGATTCTCATTGAA CACGTTCAGATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAG CTCACGTATGCATGAAAAACAGCACAGATCAAAAATGTCAATTCGGTTGT GTCCAAAATCAAAGGAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTT TGTTGATTTGACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGC TACCAACCAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006874TCONS_00006874Clytia hemisphaericatranscript
TCONS_00006875TCONS_00006875Clytia hemisphaericatranscript
TCONS_00006876TCONS_00006876Clytia hemisphaericatranscript
TCONS_00006877TCONS_00006877Clytia hemisphaericatranscript
TCONS_00006878TCONS_00006878Clytia hemisphaericatranscript
TCONS_00006879TCONS_00006879Clytia hemisphaericatranscript
TCONS_00006880TCONS_00006880Clytia hemisphaericatranscript
TCONS_00006881TCONS_00006881Clytia hemisphaericatranscript
TCONS_00006882TCONS_00006882Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006875-proteinTCONS_00006875-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:262274..267684 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
ZP1zona pellucida sperm-binding protein 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.4 0.28 0.33 0.25 340.09 220.25 91.26 96.86 60.64 93.71 27.58 35.74 0.25 0.5 0.02 0.05 59.4 142.42 0.32 0 72.14 66.77 1.11 2.63 1.4 1.24 104.53 68.26 6.59 6.55