TCONS_00006880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006880
Unique NameTCONS_00006880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006880 ID=TCONS_00006880|Name=TCONS_00006880|organism=Clytia hemisphaerica|type=transcript|length=952bp
aaaagtgtatatttgaaaattgatcaaaataaatttgaaaaagatgaCGG
TATATCAATGTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTTT
ACAGCTGTGCAGGGATTATCTGTTCCTACGACCACCACAACAACAGCTGC
TCCTACAACCACCACCACAACAACAGCTGCTCCTACGACCACCACAACAA
CAGCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTACAACAACC
ACCACAACAACAGCCGCCCCTCCtacaacaaccacaacaacagCTGCCCC
TACAACCaccaccacaacaacaacaactgcCCCTCCTACAACCACCACAA
CAACAACAGCCGTCCCTCCTACGACCACCACAACAACAGCCGTCCCTCCT
ACGACCACTACAACAACAGCCTCCCCTCCTACGACCACCACAACAACAGC
CGTCCCTCATACAaccaccacaacaacaacaggCGTCCCTCCTACAATCT
CTTCATCAGAACTTAACAACACTGTCTCGGTGAGATGTGATGACGAAAAG
ATGACCATTTTTATTCCCAAAAGTGAAATCCCGAACCTAGAAGGCGATAT
TTCTCAATACAATATTTCATGGAATGATTCTACTTGTGGACCAAGTGAAA
AATCCAATAAAACACATTTGGTCATGGTGGCTGGTTATTCCTCTTGTGGC
ACTAAAGCTGTGGATGATGGGAAAAACGTCGTTTTTCGAAATAAGgtTTC
TATCAGCAAAAATACAACACATATTACTGAAAAACCTCATCTCGAGACAG
CTAGTAGCTATGTTAGTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTA
GTTAATGTTTCACAAGAAGATGGATTCAATGTTACAATGCCTGATTCGGT
GGTTGCAAAAACAAGTTCGACTGACGAATTCACCGTCTCGATGAATCTCT
TN
Run BLAST on NCBI

transcript from alignment at sc0000072:262408..266489+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006880 ID=TCONS_00006880|Name=TCONS_00006880|organism=Clytia hemisphaerica|type=transcript|length=4082bp|location=Sequence derived from alignment at sc0000072:262408..266489+ (Clytia hemisphaerica)
aaaagtgtatatttgaaaattgatcaaaataaatttgaaaaagatgaCGG
TATATCAATGTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTTT
ACAGCTGTGCAGGGATTATGTAAGTAACTTTTTCTAcatattttatgttt
tcttataaacatTTAATTTATATAATATAAGCATTATgtatatctaggct
cagatatggcaaaAATATAAATGCGTAGTTAACCCAGGGGAGAGGGGGTA
CTTGTGactaaaacaacaaaaatgacaaatttttacTCTAAAAGGtacaa
ttttggattttttgcaTGNATAAATCTGAAAAAGATGACGGTATATCAAT
GTCTAGGCTTATTTATGCTCCTTTGTCAACTCTTCCAGTTTACAGCTGCG
CAGGAATTATGTAAGTAACTTTTTCTACATTTATATAAGCATTATATCTA
GGTTcagatatggcaaaaatttgaaTGCGTAGTTAACCCAGGGGCGGGGG
TACTTGTGACTAAAACACTCTCAAAGGGTCTCGAAAATGACAATTAAATC
AAAAGgtacaatttttgattttttgcatgctCGAACGTGCATCTCACTTC
GCAAACCTAGTACACCCCCCCGCGATATTGAACTAATTAATGAAAATGTT
ATGCTGGTGGAGGTATTGGCCGGCCTGGACTTAAGAGCCTGTAGTAGATG
GATACAGTATTTTTATTGCTGCACGAACAATAAATAGACACAGGTAGTAT
GTTCTTATAATTTGAAATTCTAATTCTTTTCAGCTGTTCCTACGACCACC
ACAACAACAGCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTAC
GACCACCACAACAACAGCTGCTCCTACAACCACCACCACAACAACAGCTG
CTCCTACAACAACCACCACAACAACAGCCGCCCCTCCtacaacaaccaca
acaacagCTGCCCCTACAACCaccaccacaacaacaacaactgcCCCTCC
TACAACCACCACAACAACATCCACCCCTCCTACAACAACCACCACAACAA
CAGCCGCCCCTCCtacaacaaccacaacaacagCTGCTCCTACGaccacc
acaacaacaacaaccacgaCCACAACAACAGCCGTCCCTCCTACGACCAC
CACAACAACAGCCGTCCCTCCTACGACCACTACAACAACAGCCTCCCCTC
CTACGACCACCACAACAACAGCCGTCCCTCATACAaccaccacaacaaca
acaggCGTCCCTCCTACAATCTCTTCATCAGGTACTTTTGATTATCTGAT
CGTTAAGGGGCATTGTTATTTCGCGATACTAGGACTGAAATGAATATCTC
AAACACCTTTATAAACCCTACACTAAGCTCCGCCTATGATCGAAGTGATA
TCATTGAAGAAGAAACTATTGAAGCGTTAAAAGTTTGCCTAACGTCCAAC
GGGtctacagtgcactttttcaaaaaatctttatccagctggcacacaac
gttgtttcaatgttcatctaCTTTCGGGTATCTAATAACCGTCCCCccct
aattaatttttcgaaaattttccacccaggacatttttattccaaccccc
tgcttattaatttttgggaaattgtttttgaaaattccctcttttgtcct
aattcagctgtattagcctccttttcaaaatttttccacccaggacattt
ttgttccaacccccccccccccccacctgcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCAaccttattaagttttgagattttttccacctCCCCCCCTCCGCTAAT
TCCAATCCCcttggctattaggtacccgagagtaatgtTTACAACGTCCA
TGTAACGTTAAAAacgaacgttaaaacaacgtcacGTGCCAGTTAGATAT
GGAGCGTTTAATGAGTGAACGAGGCTCTCGTGCCTGAAACGAGGGGGTCt
cagtctgaatcgcagaccttatagatatacttccttaGTTTGATTCGCAA
ACCTCGCTAGAGGATGAGAAGAAGCCTAATACTTCCTATATAAAAAACTT
TctctataagaaactcttttcaCTATAGGATGAACAGAAGTCTAGGACCC
AGTTCAAATCCTAGCTCCTTCAAATGTTCCGCTAAATTGATAAACAAGAT
ACCACGTATTATATGATACCTGTGATTGAAAAAGGGGTTGTATCTATTTA
GAACTTAACAACACTGTCTCGGTGAGATGTGATGACGAAAAGATGACCAT
TTTTATTCCCAAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCAAT
ACAATATTTCATGGAATGATTCTACTTGTGGACCAAGTGAAAAATCCAAT
AAAACACATTTGGTCATGGTGGCTGGTTATTCCTCTTGTGGCACTAAAGC
TGTGGATGATGGGAAAAACGTCGTTTTTCGAAATAAGGTAACTAAGCATA
TAATCATTATTGTTTCTCGAATAATCTCTAAGACGAACACCGGTTGTAAA
AACTTTATTAAAAACAATATTAGGTTCTCCTAAATATTTTAAGAGGAAAT
GCATTAAGAGAACTAATTTTATCGGGgagcaaaaattgtaaaaaatttag
atttgcCGAGAACTTATTATGTCGAGcaataattttaatttcaaaattgt
cgTAATTTTTCAAAGCATCCCCCTAATTTTTATATTAAACGTTCATTATA
AAGTTAGAAGAAAGATCTTatgttgaaaataaattgccaaaattaTTTGT
CAACGAATTAATTCTTCTTCGTAATTTTTGCTCCTATCGCCAAAATTAGA
tccctaaatattttcaatttggaAAAAGCAGttttgggctcttccagaaa
atgccCATACAAGGcaggtggaggatatagtgtccgcaGGGGAGGGGGTA
GTGAGAAAAGTACAACATTTGCCTTATCTGGGGTAaactaatgcttgtcc
ggggggggggggggggcgggccctgctgtccggggggggggggggggggg
aaaaagggaaaaatttgCCTTATTGGGGGTAAAtaaacccccgggggggg
gggggggggggaaaaagggaaaaatttgCCTTATTGGGGGTAAAtaaacc
cccgggggggggggggggggggctagacctgctgtccggggggagagtca
aaagtcacaatgtccgggggtaaatttccaaaaaatgtcatatcCTCCGC
CCCCTCccgtattcaatttttttctgcaaaagccCTTAGCGGAATTGGAC
AAAGATTCTTAATACAATTTGTTTCCAAACAAGcatttttactttatata
aaaatttgtccgaTTTTTTTGGACACACGGtatgttcgaattagagaaac
tTGAACGACtttaaacaataaattaaataataaattttccaaaatttttt
cttttaggtTTCTATCAGCAAAAATACAACACATATTACTGAAAAACCTC
ATCTCGAGACAGCTAGTAGCTATGTTAGTAGCTATATTGCGGAGTGCCGA
GTTCAGAAGCTAGTTAATGTTTCACAAGAAGATGGATTCAATGTTACAAT
GCCTGATTCGGTGGTTGCAAAAACAAGTAAGAAGACTGACTTATTGAcct
ttactcgacgttttttcgtgactttttttacatgaatctgccAATAAGAA
CGTGTATTCCCGTCTGAGAGTTCAAAATCTAGTGAACCTGTCTCAAAAGG
GTTcagaaatccaatgattgtattgACCTCTagtaattaaaatttttaaa
tccaatttaataaaatataaaGATCCCTCGTGTAAAAGTTACCAAAAACA
CAAAGATAGGGGTTACTCGGACAGGAAATTATATACACGAGACGCATTCC
CTGCGTATCGCCTATCAAATGCATGTAGCCTACTAACTCCTCTCTGGCAC
CTAATAAGTCCAGCAGGGATGTAAAATTTCGGGATATCTTTCAGGTTCGA
CTGACGAATTCACCGTCTCGATGAATCTCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003856XLOC_003856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006880-exon-sc0000072-1491911889:262408..262526TCONS_00006880-exon-sc0000072-1491911889:262408..262526Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:262408..262526TCONS_00006880-exon-sc0000072-1510915933:262408..262526Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:262408..262526TCONS_00006880-exon-sc0000072-1575043694:262408..262526Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1491911889:263191..263425TCONS_00006880-exon-sc0000072-1491911889:263191..263425Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:263191..263425TCONS_00006880-exon-sc0000072-1510915933:263191..263425Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:263191..263425TCONS_00006880-exon-sc0000072-1575043694:263191..263425Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1491911889:263534..263688TCONS_00006880-exon-sc0000072-1491911889:263534..263688Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:263534..263688TCONS_00006880-exon-sc0000072-1510915933:263534..263688Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:263534..263688TCONS_00006880-exon-sc0000072-1575043694:263534..263688Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1491911889:264709..264944TCONS_00006880-exon-sc0000072-1491911889:264709..264944Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:264709..264944TCONS_00006880-exon-sc0000072-1510915933:264709..264944Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:264709..264944TCONS_00006880-exon-sc0000072-1575043694:264709..264944Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1491911889:265915..266083TCONS_00006880-exon-sc0000072-1491911889:265915..266083Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:265915..266083TCONS_00006880-exon-sc0000072-1510915933:265915..266083Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:265915..266083TCONS_00006880-exon-sc0000072-1575043694:265915..266083Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1491911889:266452..266489TCONS_00006880-exon-sc0000072-1491911889:266452..266489Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1510915933:266452..266489TCONS_00006880-exon-sc0000072-1510915933:266452..266489Clytia hemisphaericaexon
TCONS_00006880-exon-sc0000072-1575043694:266452..266489TCONS_00006880-exon-sc0000072-1575043694:266452..266489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:262408..266489 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.88712	0	0	0	0	0	0	0.595173	4.60779	0	0	0.00831355	3.03907	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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