TCONS_00006877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006877
Unique NameTCONS_00006877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006877 ID=TCONS_00006877|Name=TCONS_00006877|organism=Clytia hemisphaerica|type=transcript|length=1461bp
gccaaattaaatccacgccaaaattaatccactggATGTTGCCACTAAAA
AAAACCTGTATCTTTTCTTATTAAGTTTAGACCAAAATTAAGCtcactgt
tcttataaataataacaaacttttttctattttaaaaagtgtatatttga
aaattgatcaaaataaatttgaaaaagatgaCGGTATATCAATGTCTAGG
CTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGTGCAGGGAT
TATCTGTTCCTACGACCACCACAACAACAGCTGCTCCTACAACCACCACC
ACAACAACAGCTGCTCCTACGACCACCACAACAACAGCTGCTCCTACAAC
CACCACCACAACAACAGCTGCTCCTACAACAACCACCACAACAACAGCCG
CCCCTCCtacaacaaccacaacaacagCTGCCCCTACAACCaccaccaca
acaacaacaactgcCCCTCCTACAACCACCACAACAACAACAGCCGTCCC
TCATACAaccaccacaacaacaacaggCGTCCCTCCTACAATCTCTTCAT
CAGAACTTAACAACACTGTCTCGGTGAGATGTGATGACGAAAAGATGACC
ATTTTTATTCCCAAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCA
ATACAATATTTCATGGAATGATTCTACTTGTGGACCAAGTGAAAAATCCA
ATAAAACACATTTGGTCATGGTGGCTGGTTATTCCTCTTGTGGCACTAAA
GCTGTGGATGATGGGAAAAACGTCGTTTTTCGAAATAAGgtTTCTATCAG
CAAAAATACAACACATATTACTGAAAAACCTCATCTCGAGACAGCTAGTA
GCTATGTTAGTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTAGTTAAT
GTTTCACAAGAAGATGGATTCAATGTTACAATGCCTGATTCGGTGGTTGC
AAAAACAAGTTCGACTGACGAATTCACCGTGTCGATGAATCTCTTCAAAT
CAGAAGATTTCAACAAAATGTTCAGCTATCCTGCTGTTATCGATATTACT
GACCGATTCAATTTGGAAATCGAACTGGTAACTAGTTCCAGCCTCTTTAT
CATACCTCAAAATTGTCACGCAACGGCTGAATCAAATCGAGATAATTCTC
TCAAAGAAGACATCGTCATAGACAGATGTCCAACACctggtcacgatttc
caagaagaAAAACCAGCTGACAACGGCAAGAAATTTCGATTCTCATTGAA
CACGTTCAGATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAG
CTCACGTATGCATGAAAAACAGCACAGATCAAAAATGTCAATTCGGTTGT
GTCCAAAATCAAAGGAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTT
TGTTGATTTGACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGC
TACCAACCAAC
Run BLAST on NCBI

transcript from alignment at sc0000072:262274..267684+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006877 ID=TCONS_00006877|Name=TCONS_00006877|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at sc0000072:262274..267684+ (Clytia hemisphaerica)
gccaaattaaatccacgccaaaattaatccactggATGTTGCCACTAAAA
AAAACCTGTATCTTTTCTTATTAAGTTTAGACCAAAATTAAGCtcactgt
tcttataaataataacaaacttttttctattttaaaaagtgtatatttga
aaattgatcaaaataaatttgaaaaagatgaCGGTATATCAATGTCTAGG
CTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGTGCAGGGAT
TATGTAAGTAACTTTTTCTAcatattttatgttttcttataaacatTTAA
TTTATATAATATAAGCATTATgtatatctaggctcagatatggcaaaAAT
ATAAATGCGTAGTTAACCCAGGGGAGAGGGGGTACTTGTGactaaaacaa
caaaaatgacaaatttttacTCTAAAAGGtacaattttggattttttgca
TGNATAAATCTGAAAAAGATGACGGTATATCAATGTCTAGGCTTATTTAT
GCTCCTTTGTCAACTCTTCCAGTTTACAGCTGCGCAGGAATTATGTAAGT
AACTTTTTCTACATTTATATAAGCATTATATCTAGGTTcagatatggcaa
aaatttgaaTGCGTAGTTAACCCAGGGGCGGGGGTACTTGTGACTAAAAC
ACTCTCAAAGGGTCTCGAAAATGACAATTAAATCAAAAGgtacaattttt
gattttttgcatgctCGAACGTGCATCTCACTTCGCAAACCTAGTACACC
CCCCCGCGATATTGAACTAATTAATGAAAATGTTATGCTGGTGGAGGTAT
TGGCCGGCCTGGACTTAAGAGCCTGTAGTAGATGGATACAGTATTTTTAT
TGCTGCACGAACAATAAATAGACACAGGTAGTATGTTCTTATAATTTGAA
ATTCTAATTCTTTTCAGCTGTTCCTACGACCACCACAACAACAGCTGCTC
CTACAACCACCACCACAACAACAGCTGCTCCTACGACCACCACAACAACA
GCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTACAACAACCAC
CACAACAACAGCCGCCCCTCCtacaacaaccacaacaacagCTGCCCCTA
CAACCaccaccacaacaacaacaactgcCCCTCCTACAACCACCACAACA
ACATCCACCCCTCCTACAACAACCACCACAACAACAGCCGCCCCTCCtac
aacaaccacaacaacagCTGCTCCTACGaccaccacaacaacaacaacca
cgaCCACAACAACAGCCGTCCCTCCTACGACCACCACAACAACAGCCGTC
CCTCCTACGACCACTACAACAACAGCCTCCCCTCCTACGACCACCACAAC
AACAGCCGTCCCTCATACAaccaccacaacaacaacaggCGTCCCTCCTA
CAATCTCTTCATCAGGTACTTTTGATTATCTGATCGTTAAGGGGCATTGT
TATTTCGCGATACTAGGACTGAAATGAATATCTCAAACACCTTTATAAAC
CCTACACTAAGCTCCGCCTATGATCGAAGTGATATCATTGAAGAAGAAAC
TATTGAAGCGTTAAAAGTTTGCCTAACGTCCAACGGGtctacagtgcact
ttttcaaaaaatctttatccagctggcacacaacgttgtttcaatgttca
tctaCTTTCGGGTATCTAATAACCGTCCCCccctaattaatttttcgaaa
attttccacccaggacatttttattccaaccccctgcttattaatttttg
ggaaattgtttttgaaaattccctcttttgtcctaattcagctgtattag
cctccttttcaaaatttttccacccaggacatttttgttccaaccccccc
ccccccccacctgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAaccttattaagtt
ttgagattttttccacctCCCCCCCTCCGCTAATTCCAATCCCcttggct
attaggtacccgagagtaatgtTTACAACGTCCATGTAACGTTAAAAacg
aacgttaaaacaacgtcacGTGCCAGTTAGATATGGAGCGTTTAATGAGT
GAACGAGGCTCTCGTGCCTGAAACGAGGGGGTCtcagtctgaatcgcaga
ccttatagatatacttccttaGTTTGATTCGCAAACCTCGCTAGAGGATG
AGAAGAAGCCTAATACTTCCTATATAAAAAACTTTctctataagaaactc
ttttcaCTATAGGATGAACAGAAGTCTAGGACCCAGTTCAAATCCTAGCT
CCTTCAAATGTTCCGCTAAATTGATAAACAAGATACCACGTATTATATGA
TACCTGTGATTGAAAAAGGGGTTGTATCTATTTAGAACTTAACAACACTG
TCTCGGTGAGATGTGATGACGAAAAGATGACCATTTTTATTCCCAAAAGT
GAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATATTTCATGGAA
TGATTCTACTTGTGGACCAAGTGAAAAATCCAATAAAACACATTTGGTCA
TGGTGGCTGGTTATTCCTCTTGTGGCACTAAAGCTGTGGATGATGGGAAA
AACGTCGTTTTTCGAAATAAGGTAACTAAGCATATAATCATTATTGTTTC
TCGAATAATCTCTAAGACGAACACCGGTTGTAAAAACTTTATTAAAAACA
ATATTAGGTTCTCCTAAATATTTTAAGAGGAAATGCATTAAGAGAACTAA
TTTTATCGGGgagcaaaaattgtaaaaaatttagatttgcCGAGAACTTA
TTATGTCGAGcaataattttaatttcaaaattgtcgTAATTTTTCAAAGC
ATCCCCCTAATTTTTATATTAAACGTTCATTATAAAGTTAGAAGAAAGAT
CTTatgttgaaaataaattgccaaaattaTTTGTCAACGAATTAATTCTT
CTTCGTAATTTTTGCTCCTATCGCCAAAATTAGAtccctaaatattttca
atttggaAAAAGCAGttttgggctcttccagaaaatgccCATACAAGGca
ggtggaggatatagtgtccgcaGGGGAGGGGGTAGTGAGAAAAGTACAAC
ATTTGCCTTATCTGGGGTAaactaatgcttgtccgggggggggggggggg
cgggccctgctgtccgggggggggggggggggggaaaaagggaaaaattt
gCCTTATTGGGGGTAAAtaaacccccgggggggggggggggggggaaaaa
gggaaaaatttgCCTTATTGGGGGTAAAtaaacccccggggggggggggg
ggggggctagacctgctgtccggggggagagtcaaaagtcacaatgtccg
ggggtaaatttccaaaaaatgtcatatcCTCCGCCCCCTCccgtattcaa
tttttttctgcaaaagccCTTAGCGGAATTGGACAAAGATTCTTAATACA
ATTTGTTTCCAAACAAGcatttttactttatataaaaatttgtccgaTTT
TTTTGGACACACGGtatgttcgaattagagaaactTGAACGACtttaaac
aataaattaaataataaattttccaaaattttttcttttaggtTTCTATC
AGCAAAAATACAACACATATTACTGAAAAACCTCATCTCGAGACAGCTAG
TAGCTATGTTAGTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTAGTTA
ATGTTTCACAAGAAGATGGATTCAATGTTACAATGCCTGATTCGGTGGTT
GCAAAAACAAGTAAGAAGACTGACTTATTGAcctttactcgacgtttttt
cgtgactttttttacatgaatctgccAATAAGAACGTGTATTCCCGTCTG
AGAGTTCAAAATCTAGTGAACCTGTCTCAAAAGGGTTcagaaatccaatg
attgtattgACCTCTagtaattaaaatttttaaatccaatttaataaaat
ataaaGATCCCTCGTGTAAAAGTTACCAAAAACACAAAGATAGGGGTTAC
TCGGACAGGAAATTATATACACGAGACGCATTCCCTGCGTATCGCCTATC
AAATGCATGTAGCCTACTAACTCCTCTCTGGCACCTAATAAGTCCAGCAG
GGATGTAAAATTTCGGGATATCTTTCAGGTTCGACTGACGAATTCACCGT
CTCGATGAATCTCTTNTGTAAAATTTCGGGATATCTTTCAGGTTCGACTG
ACGAATTCACCGTGTCGATGAATCTCTTCAAATCAGAAGATTTCAACAAA
ATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTCAATTTGGA
AATCGAACTGGTAACTAGTTCCAGCCTCTTTATCATACCTCAAAATTGTC
ACGCAACGGCTGAATCAAATCGAGATAATTCTCTCAAAGAAGACATCGTC
ATAGACAGGTATTTAATGAAAAcagtaaaggcttggggacacgagaattt
ttttcgcgttggtgcaatgcaaatgctctatcccaccaacctgaaacgct
ttctcgcgTCTTCAcctcatttttctttctaccaataaaagtgaaaccTG
ACTTTTCTTCTTCCTGACTTTACGctgacaaaatcagcgtgtcttctggg
tatttccctcactttttgtcccgtTAAACGGGATCCAGGGCCTATTCACC
GCGATTTCCATGGACAAAAAGGGGTATGTAAGGAGTGGAGATTACGATCG
GGAactctttgtttcagctaatgaCCCCTTAGACCATGTTCATACATTAA
GGTTTCTTATCACTTGAGTATAGATTTGGTTACGACAAGAAATGGTCATG
TTCGTTTCGAGAAATGTTTCGGTGCAGTTTCGTTCCGATGAATAAAGTGG
AGTGTAACTGATTCGatacgtttttctttttagcgtctttttttttgaca
tttcaaatttttggtgtGCACGCAGGCTTTTAGAACGTTTCATTTCGAAA
CAATGTGGAACATCAACGTCTGAACATTACAATGTCTTAGACGATTTAGC
CACCACTAATATCAACTTCTCGATCACATACAGCATAATTGATTTAAAAC
TTATCAACTATTCTCAATTTCTTAGATGTCCAACACctggtcacgatttc
caagaagaAAAACCAGCTGACAACGGCAAGAAATTTCGATTCTCATTGAA
CACGTTCAGATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAG
CTCACGTATGCATGAAAAACAGCACAGATCAAAAATGTCAATTCGGTTGT
GTCCAAAATCAAAGGAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTT
TGTTGATTTGACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGC
TACCAACCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003856XLOC_003856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006877-exon-sc0000072-1491911889:262274..262526TCONS_00006877-exon-sc0000072-1491911889:262274..262526Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:262274..262526TCONS_00006877-exon-sc0000072-1510915933:262274..262526Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:262274..262526TCONS_00006877-exon-sc0000072-1575043694:262274..262526Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:263191..263425TCONS_00006877-exon-sc0000072-1491911889:263191..263425Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:263191..263425TCONS_00006877-exon-sc0000072-1510915933:263191..263425Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:263191..263425TCONS_00006877-exon-sc0000072-1575043694:263191..263425Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:263624..263688TCONS_00006877-exon-sc0000072-1491911889:263624..263688Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:263624..263688TCONS_00006877-exon-sc0000072-1510915933:263624..263688Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:263624..263688TCONS_00006877-exon-sc0000072-1575043694:263624..263688Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:264709..264944TCONS_00006877-exon-sc0000072-1491911889:264709..264944Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:264709..264944TCONS_00006877-exon-sc0000072-1510915933:264709..264944Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:264709..264944TCONS_00006877-exon-sc0000072-1575043694:264709..264944Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:265915..266083TCONS_00006877-exon-sc0000072-1491911889:265915..266083Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:265915..266083TCONS_00006877-exon-sc0000072-1510915933:265915..266083Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:265915..266083TCONS_00006877-exon-sc0000072-1575043694:265915..266083Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:266515..266731TCONS_00006877-exon-sc0000072-1491911889:266515..266731Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:266515..266731TCONS_00006877-exon-sc0000072-1510915933:266515..266731Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:266515..266731TCONS_00006877-exon-sc0000072-1575043694:266515..266731Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1491911889:267399..267684TCONS_00006877-exon-sc0000072-1491911889:267399..267684Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1510915933:267399..267684TCONS_00006877-exon-sc0000072-1510915933:267399..267684Clytia hemisphaericaexon
TCONS_00006877-exon-sc0000072-1575043694:267399..267684TCONS_00006877-exon-sc0000072-1575043694:267399..267684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:262274..267684 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	131.929	84.7312	33.8749	34.8269	14.4126	13.2072	8.07365	8.90029	0.245081	0	0	0.0480655	1.91201	1.60063	0	0	0	0	0	0.18639	0.592836	0.255932	0	2.7326	3.10954	3.19732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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