XLOC_003562 (gene) - C. hemisphaerica

Overview
NameXLOC_003562
Unique NameXLOC_003562
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000066:40019..44389+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003562 ID=XLOC_003562|Name=XLOC_003562|organism=Clytia hemisphaerica|type=gene|length=4371bp|location=Sequence derived from alignment at sc0000066:40019..44389+ (Clytia hemisphaerica)
gtcTGAAATAGACAAATTACACTAGCTTTTCTTATCTCTGTGTCTTCTCT
ACGCTTCGAAGCTGACTCAGGATTTGAGAGAAGCTTTTATATGAACCAGC
TtgttctatttttagtaatccGCCATATAAGGAGATATCCAGCGACAACA
TATCGCGAGAGCCAATCAGAATCGTTTCTATTCGTAACGTCggcttctga
ttggttcttgAGAACAATCAAATAACAACGGTAAAAACATTTACCGTTCT
CGTTTTAAACGCTTTGTGATTGGTTAATAAACAAAAGCAAAGTGTTTTGA
TTGGCTACAAATATTCTCTTCATACACTTTTAAATGTGAAGCGAACATTA
TAGTAGACTTGTGTGTGTTGAGGAAATTGTAATATTATCGAAAAGCTAGC
TGGatttgcttgaaaatgaaaggaGCTTTTGGAAAGATATAAATTCCACG
GTGATATAAAATTTGTAGTCGAGTTATATTATTAGACTTGTCAAGACAAG
ACATGTGTAGAATTtgcttatatattttttcatttttctttttcaaggta
agaaaaaatacaaaagaaatataagaGAGAAATCAAAATGTATTTAGAAA
TGGATGCTTCTTATGCGCTACCGTCGtcatcaatcttccaagaattGCAA
AGGATTCACGATACTGGATTCTTCAGTCCTGTGCATTCTCTGGAAGATAA
GTTTCAACAGGTAAGAActcatgtttttgtttttacttgGAAGACGTTAC
CACTTTTGCTTCAGTGTTTTTTTGCGCACATTTTTCATTGATACTTTTTC
GCGGgtaaaatctttgtttattaTAAACTTGGAAACAGTGAAGCAGTGAG
GCAAACAAAAGTGTTTTCGTGAAAAATATTTGCTGGAAAATTGTGCAAAA
AAGGAAGACAGCAAGAAACGTGTTTCGTTGATAAAGCAATAACAGAAATG
ATGTTTTTGCTTAGGGCAACATGAAAGTATTTTGATAAATAATGGGAGAG
AAAATTCTTGTGATTTGACAAGCAAACGATTTTAATAAACTTTGATGTCG
TCATCATTTTAGACTTATTTCATTCATATTTTCATGTGAAAAAGCGTAAT
CTCATATATTTTTGCAAACTTATTTGAATGTAATTACTTTTGTGGATGAA
TgttactgtttttttttctctttttgatgatgataattcTCGAAAgacca
aaatgaaaaacttttcaattaTATCTGCTAAACGACTACTAAACATGTCG
ATTTTCGATTATTGAAAACACACGTAGTTTTTTAGCAGTCAACTGTGCTT
TTTTTTGTTCTCTGTAATCGTTGAGTTTTATGTTATAAAGTTTGTATAAG
AATATAATGTTGAGGTGCTTTTTCTCTATCATCGATTCATGGCATTTTAC
GTATGAATCAAAAAAGCATTGATTGATGAAAGAAATGAAATGTTCAATTT
TGACCATTCAGACTTTGATTGAACTACCATTTATCATTGAGAGGTATACT
CTATATAATCAATCATCTTTTGTCTATTTAGAATCGTTTGGAGATGGACC
GTTACCTTGGTGACGAACCTAACTCACGTAACAATGGTTTAAGTGGTAAA
CAAGATGGCAGCACAGTAGCGTGGAATGAATTTCTCGTACCCGACGAAAT
GGACAATGATGTAAATGGTCTGTCATATGATTTAGAACTGCTTGCTCCTT
ACTTCGATATGTACAATATGACGAATAAAGTACAAGTCGTTCTTCCTGAA
ACACCTACTTCTGATCTCGATTTTCCAGTTTTCAAACGAAACAATGCaac
taaattttctttcaatcatACACAAAATATCGAAACTTCACTATACTCTG
ATCACGCACTTATTGTTAAACCGGTCATTCTTACACCACCAAGTTCACCC
GAAAGCGTTTCCAGCGGTGGCTCCGGAAATACTTCACCCAGAGGACTAAA
ACCAACCAAAGGACAAAGGATACAAAAACGTGgtagtggtggtggtggtg
gtggacCGAACCATGCTGCCAAACTATTAGACTCCATTACACTTAATCCT
GATAATTCTTTAAATCTTGCAGACTTAGCTAATCTGGATTCTAAGAAACG
AATTCACAGATGTCAGTTTAACGGTTGCAGAAAAGTATATACCAAATCTT
CGCATTTAAAAGCACATCAAAGGACACATACCGGTGAAAAACCTTATAAA
TGTACTTGGGAAGGTTGTCATTGGAGGTTTGCACGATCAGATGAATTAAC
GAGACATTATCGTAAACATACTGGAGCCAAACCGTTTAAATGTTCAGCAT
GTGATCGATGTTTTTCACGTTCAGACCATTTAGCACTTCACATGAAACGC
CATGGTAACGTGAATTCTCTACAACACAAAAGTAATTCTGTCAACAACAA
CTTGAATAATActaccaaaaatcaaattctGAATAATACAGCACAGAATA
ATCCAACCAAACTCTTATCCTCTCCCATGAATCACTCGAAATTAACTTTA
ACTGCAGCCGCGACTGCCGCTGTTGCTTAGACTTGcatcaaaattttagt
aaatcaATAGTTCATATTAGCAGATCATGATTtagttttttatgttttct
ttcttttgatttttgataatttttttttgtcttcttGAACAAAATTAGTA
CAATATAGATTATTTGCCAAATAACTTAGTAAAAAAGATAGGTAgctcag
aaatttttttttatttctaaacaaaacattaggaaattatattttttgtg
tCATTTCATTATGATGCAGGATTTCTTTACATTCGTTCATAATATCTGTA
GTGTTCGATAAAATTTTAGTGcatatttttcactttattaTTATAATAGG
GTTTCTCGTGTTATTCTTTTTCAGTTTACtcagttttccccattttttgt
GATAAATAATTTGAAGGGATATAACAGGTCATAAAAGAGAGGAATAGATG
GAGGGAATatcctttctttcttttcctaTAAGGAGAACACATTTTAGAAC
CTTTTGAAATCCTTTCCAAAGTCTTTAGTAGTAACAAGACCTTTCCTATA
AAGAATAAACTCATCCATTTTTTACACCAATAAGAAaaccttttcttttc
attttatgGATTTCGTATTGACtcggaaaaaaaagaagaatatgaACGTG
CGAATCCGTTGTTTTTCTATACCGAAACATGTGCAGAGAGAGACCTAAAG
CAGGCAttattttcttaatattttgtttaCACAGTTCACTACCAGTTacg
ttataattttttttgttagaaATTTTAACTTACATACAACATGGCGGGAT
CAGTAATAATATCAAAACACATAATACTATTTTTCTATTGATAATTAtct
ttattatattatattaacaaCACAATTATTTATAAATGCACTGTTATTTT
TTTACCTCTCTCTCTCATTTCTCTCAGGCTTCACATGTTTTTAAGTTTGT
ttcacattttttttgtttcatttttcaaattattctatcaatttctttta
tatattttcagttCAAAATTATTCCCTAGTGtttccttattttcaatatt
tcacaaCGTTGAGTTCACAATTACTACGGAttttaaagtaaacaaaactc
TTCAAACACTTCAAACCTACACATACCAACCCTTAGTTTTTTATGTGGTT
AGCTCGTAGTGACCAagtgttttctcttttttgtcgTTTCAGGAAAAATT
CTACTCTGCTTTCATTTACATGTCAAGCCAGGGTagaattttcctttttc
gtTGTGTTTTTTGCTCCATTTTCTTCTGCCAACTGCTTTGTTATTAAATA
TATTACACCTTGATACTTACCTTAACCCAGCTGTCACGCGACGTTGcgtc
aacgtttatctaacgtttacAACGTCTATacaacgttagattaacgttaa
aacaacgttgtgtgtcagctggcaATGCCAAACCAAAACAACTACAGTAA
ATCGATATGTATATAATTTGTATTTAGGTAgtttaagaagaaaaaaattt
agtaatatTATTAATTAGTGTATATGAATGAAttgtaaagtaaaaaaata
ttaaaaaaagatcTTCGGAGCTCTTGTTGGAAAAATCCAatctaaaattg
aaataaaaagaaattaaaactcATTTATCATCTTGTTCTATCTTCATTTg
tccttaacatgttcttattttcgccattttttgggtAGTTTTGTGcgtta
tgtttttatatagtttgttcttataaaaaaacgtgtatattaattttttt
cgtAAATTTCGTTCAATTGTCAACTacatataagaaaaataagcccaaaa
acaccaaaaggTTTTAAGTGCTGACAAGGATAAAACagaaattgattatt
tttttggtGATGACATCGTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006216TCONS_00006216Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006216-proteinTCONS_00006216-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:40019..44389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.36	5.61	0.79	0.66	42.82	31.78	41.78	45.37	17.06	116.58	33.73	15.62	33.54	37.25	60.06	39.38	22.69	35.61	38.45	34.98	19.34	22.48	13.81	19.48	20.93	21.3	77.92	81.71	200.85	177.25