XLOC_003423 (gene) - C. hemisphaerica

Overview
NameXLOC_003423
Unique NameXLOC_003423
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000062:57828..65095+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003423 ID=XLOC_003423|Name=XLOC_003423|organism=Clytia hemisphaerica|type=gene|length=7268bp|location=Sequence derived from alignment at sc0000062:57828..65095+ (Clytia hemisphaerica)
CACGGAGAAGTTGAACTGAAATATTctagaaaataataataaaatggAAA CTGAAATAGCAAGAAGTTATTTGCTTTTGAGCGAGAAAAACACGCTAAGG AGAGGGTAAAGAAAATTTATCTTTTCCGTTTGTGATTATTCAGGGGTGAG TGAGTTTTATAagctcttaaaggttttgtttaaaaaaagagtgatatcgt ttgcctaCTCATCAATTCTAATGGGATtctaattcacaagctttttcatg ttggattgacacggatgtggagcaagattgttcAGAAAGAGGAatagaaa aacatttctttgcttatatcagcataatataacaataggcagacactgtt atagtatgaaatatgtgtctgatatgaaacttatgtaaaaataaaacctt taagtcgTTAACAGAaacataatttgaaaaaataatttgtaattCACATT TTCAGTGAGTTTCAACTTTTTGACATGCCATGTGGTCGCCCTACTTTAAA CTTAATTGTTATGTGCCTTTAAGATACGCGATTTTgtgtaagaacatcca aatcttttataacacccctgtctcacagccccggtggaagcTTTTTCCTC AGTCGGGATAAAAATCCCTAtttaaatcccaatggggatagaaattcttt tgtatcaatccaatggggatggttttggagtgcaatttttataCATGAAA TTTCGAGtggagatgaaatcaaagtcatttttcCCTGTCATTTTCAAGGG TACTTTTCCACCGAGGACGAAACTGTTGCTAAATCTACCATTGGGGGACC CCGcgggtttgtgacacaggggtgtttttgtAGCCTTCGGATAACTTTTT GCGTCTGAagaatttaaagatttaaaaaaaaattgtttcttaatttcacc attttttgtgAGAACGTTTCtacaattttctaagaaatttttAATGTTCT TATAGCTTGTTTCTAATAATatggccatcgaaaccttatgttcatatata gtttgttcttattaataaAAATGTTTACCATAAGCTCGCCAGGACAAAAT AACAGCTAGTGCCCGAGGGTTTTCCACGATGGTAAGTGGGCGTGGTGGGT ATTTACCGTATTTGGGATCAATTTCCCGGGTCGGCAATTATTTAAGAGTG TAATTGTCTTGTCAGTGTAAGAAATGAGTGAGAATACAGCTAGGACACAT TCTGATACACTTGCTTTCTTGCTATCTCTATAAAGGGCTACATAAACTAC TCAATATAGGTTGATAatatattgctgagtgccggcaatatattgaaaag gtgtcagcaatatattgtcagctcgatttgcaatattctaataatatagg gggattgtttacagaaagaaaattcctttttaaaatAGAGCACTTGTTAT TTTCTTCGTACATTACGATCCGCAAACTATACTGTCGAATATTGCTCACc tatatattgtgtagtctaattAGCCCTTAAGATACTTTAGAATCTCTCAA GAGAGCAGAAAAACCGTTCGAAATGCAAAGATGTTCGATTTTTGATGATT TGTGTTTGATTTAATTCTTTTCGTGCACCTGGTATCACTGCTGCCACAGC GTCTTCAAGAATAATAAACAGTCGAAACaatagaaaataaacaaaaaaca ttttcaaattgtttGTTTAAACATGTTTCGAATTTCTTCTGTTCGAATGT GAGAAATATCTTACATTCCCAAGTATATGAGTATATTAAAAATTTGTCGA TTCAGAAGCTTACATTTCATTAAAAATCGTATATCATTATAACTTAAATT CTTGAATTATTGATTCTAGGGAGTTCAGTTCTATAccttaaaataatatt tcaaatcaGATCTAATATTGATGCGTCTGTTGATACATTGCATAGCGGCT AGctagttttgttttcacaaaCATTCAAAAGCCTCCAATTCAGTATGATT TTGAATGCAGCTTTCGAAGAACTCTCCACCTCTGGGTGGAATTCAGCCAG TACGGGAGTCGAAGTTTTAAGCAGGAAATTATAACGTTGTTGGTTACAAT TGACTAAACTGGCTATGTTAAAATCAAAGATACTGAAGGTTAAAATCTAT GTATATTAGAATGTTTTCATATAAATGTGAAGGAGGGTGACCAAATTAAA CAAAAAGACGCTGTGATTTTGTTCGAATAAACGCGACCACAATACTGTGC TATTGGACTCCCTCAAATTCCATAATATGATAGATTTTGAAGGGCATCAT TCGTCTCAGGTGAAGAGACAATTTTGTGATTAAACCAGTCAGAAAAATTG TGATATTACGTGTGTAAATACAATAGTCATGTTGGAGGGTACTGAAATAC CGTTTTGACTTATTCTACTGAGAGTTATTtacatttcaatttttgaagtc aTAAAAGAATCTCAAATTGGTaaggtttctttttcttttttaagggaGAC ACTTTACTTCTAGCATCTAGGGCATCTTTATCACGGGGTTACTTCTCACT TTCCTTAAAACTGTATTTAATACTTTGTAACACAATTCTTCAAGAATTAG ATTTcttattcttaaattttaatCTTCAATTACAATCCAATTAGTATTAT AAAGTAGATATAGAGGTATCATAGTGGATGGATACGATGGCCCAGAAGGG CCAAAacagttcttataaatttgtgaactagaactgtctagggtcaatgg cccagaaggctcaagtgacactgcgcacttctgactttttgtcaGGGCGG AAATTTCCAAGCGAGCGGCCCGcgcgatgaaatttttttcggtctttaaa atgaatgtcgagTTACGCANTTTTTTTCAGGGCGGAAAATTTCCAAGCGA GCGGCCCGcgcgatgaaatttttttcggtctttaaaatgaatgtcgagTT ACGCAAAATGAGTTAACATTTCTGAGTTGTTCATATCAAGAGTTACAGGC TAAAATTTCTGAGTTAAGTGCTAGTCAGCAAAATCCGCCCCAGTAGCAAA AATCGGGGAAGCTAAAANccccccccccccagtggcaTAAATCGGGGAAG CTAAAAGTgaacaaatatcaactttgtttttttttgcctcCACGCCGCTA GCATTTTCCGCCATTGGACCACCCTAGTGCATGAAAACTAGAAAGTGTGT GGgtgtgttttgatttttctgctgTGAACGCCAGAATCGAGAATCTGAGA ATCTacaggaaggaaaataactcgaaaatttaaaagaaacgaaaccgagt aaaaaaacgagaaatgattcgaaaatttaaattagttaAGATACCATCAG AGATAACTCGAGATTTTAAATTCACGGGAAAAAAACGACCTACAAAATTG AGAATGACGTCATATAgaaggtacaaaatgacgtcaaaatttccgaaaaa tgacgtcataactcggttttttcgtaacttggttttttttaactcgagaa aaatagCTCGGGATTTCCGAGCCTCTTTGTTATTATCATTAACTCATTTA TTACAACTCGGTATCTATTTTGTTGACCAGAACGGCTATCTTTCGAGGGG GACTTTTGcgtctctaaaatatttttagaagtgcgtagtgtcgtcacaaa aaaactcggaagtgcgcagtgtcttgNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCAGTGTCttgtgagccttctgggccatgaccctagaca gttctagttcacaaattttataagaactggaagtgcgtggtgagccttag gggccatcgtaGATGGAGGCTTGTCGTATCTTGGATcgcgagatttacgt ttggctacgtttcaagagattcttctcccatcccAACATCGCTTTATTTC ACTCACAATTTTATTAACGCAACACTAAGTTTACTCTATGAATTTGATTG GATGTTGAAGGTTTAATTATCACACTACATTTTTATAATACAtccaattt ttgaagccttcggatgttcttaacgttttgagttttaagcctaaaaatgt tcttaacatgttcttattttgaccaattattgagtatttttgctcatctt cctaagaaattgggtgttttagagtctgcaaagctttaaaatgttcttaa cttgttcttaacattttggccgtggaagtcttatgttcttataaagttta taaagtttttataaaaaccaggCCGCCAGCATCCTTCAGATTTTTTGTTA TAAGGATGCGAATCGGCGTCACGACCGCTTATTTTTGCCAAgcaagtttt tttaaatgacagaaattgttGACCTCCTTAAACTTTCAGGAAGAAGCATa tcacacgttttttataagaacaaactattttaaacataaggtttcgatgg gcaaaatattaagaacaagttaagaacatttaaagggtttataggctcta aaacacccaatttcttagtgAAATGGACAAAGATTcttaaaaaatggcga aaatcagaacatattaagaacatttttagacttaaaacttaaaaagttaa gaacattcgaacgTAAATCTTCAGAGATGCGCGAAGCCTACCAGGAGGCT TCCTGTTGAAGCTCGCTTGTTCTTATTTCaaaagcaaaattattttagat ttaATTGCAATCACCTTTAGTGTGCTCATAATTAAGGCAGTTTttaatta agaaaaaataatgacTCAAAATAAGTTGCCAAGTAAGCAAATGGCAATTT TGCTGAATATCATTATGTAGCATTTTTTCCTCGACAATTTGCCTTTTATT TTGCTTAAATgtaaacacgttttttttattagaacacctaaaatttggct gagcctggatgtgcttatttttttAGCAATTTTCAGCCTAAaatgttctt aaatgcgttcttaatttttcagactactctaaatcgactaACAAGGAAAG TTCATTTACTCTAAAGCTCTTTTATCAGGGTTTGTTTTATAAACAAGAGG CTTGAAAATAACTTAgggtttggaaaaatttgaccaACATGGATTCTTTG CCGGGATCGGGTTTTGACtggtaaaatatttcttaaaaatttaataTATT GGGCAAAGTAAAAATTGGActggaaaaaaatcgaagatAGATATTATGTA GTGGTTCGGTTATGAtgcaaaaaggttttgaaataaaatatttaaacgGA CATTGGTGTGAACTCTGATACTTGTTAAAACACTTCAATGTAAACTCGAA AGGGCTGTTATTATATTATGCATCTGCGAGTAACATACATGATCTTTCTC TAATGGAGGGcattttttcatacttttttatgTCAGCAAGTTTTTTAAAt gtataatataataaaatcCATAAAAATGATCCGGCGATTCTTTCAGTATT GTTTGAATTCtttatttcagaaaaaatcagaCGACCAGCAGGATGGAGAA CGAAGATGCATTTAAGGCATTCCGACGGGCGGTACAAAACGCCCACCACA AAGAAGACCCAATGTTTATCCCTATACAAAGTCCGCCCTTTAGTAGAATT CCACTAAATGAAGAAACGCCACCACGCCCTCATTTCTTGCACTTAGTACT CGTGCTTAACTACAGAGacgttttaaagattttaacatttttgttgGTCA TGTTATCTTTAATTCCGCTAATAATGCGTTTCCGTAAGCGACTCAGACAT GAGCGTATGTATAAAGTACGAAAAGCCATACAAACAATATTCGCTTTCTT GAATGTTATATGGATCATTGGGTGCGTTTGTTTACTGATAATGAGTGCTC ATATTTTCTTATCAAATTACCAAGACAAAGTTGAGAGAATCGAGAAAACA TTTCCGTGGTATATTATAACGATCATTTTATGTTGTATAATCGAGATTGT TGAATCCATTTTTGGTCTCAGTGAGCCAGTTATAACTGTACTATCAACAG AGAAAACAGTGATTGATCTGAAACACGGAAACAAATGTAGCCCCTTGACC AGAGCTGACGGTAACAATAATGGATGCAATAAGAAAGCAGATGATGAGAA ATTGTTATTGGCTTAATTGCGTGGTAACATGTGAAGAACCTATCATTTGC GGACACTCCCTCGTTAACGGACACTAGATCCGGACAATCTTTCACTTCaa ggaagaaaattttcattaacaGATATATACGCGTTCTTTCATTTGGTTAT TTGAGTTGTGTAGTTATTGGCGAGCCATCATTCTTAGCAGAATACTTTTC TTAAAGCCTCAATTAGTCTTAATGCTGTAATAGGCTCATTTGCAGATTGC ATTTTGTTGTCTGGGAGAAGGGAGATTTATTCCtttgaaatttcataaat cgaTACTTAGCAATAGTGCTTAGGGATGAAATTATAACTTTTTCCAGAGT CGCCTGTGTATTAATACTGGAGCACTTTTTAAAGTGTTTGGGTAAACACA CTAATATACCCCTATCAACCCTAAGTGGTACAGTCGTCTTTCGAGGGGAT TGGTAATGAATTTACAGGGAAAATTTGCGACTTTTAGCCATTAGCTCAAC CAAGTTGACATTGACACTTATCACTTGTAAGGAAGGGTATTTTACATTTT CCACAAGAATGGAACTCTTTTCTTTACCACTTTTGCCAGTATAATAAACA AGTTCGAGCAAATAAAACCTTCGAAGAACGGTAACGGTAACGGTATAAGT TTGCCCGAATCTACGGTTAATTTCAGATGAACTTGGGGTTTTTATTTTGA CTCATTTACTAGGTAGGTAAAAACAACCCTGCTAATGTATCGTACTGTCT GGCGTGAAAACCAGAGAAATACTTATGTTTCCCAGTGTGGAAATCAGCGA ATTCTTAGCAATTAACACAGTTTTTGACACCAGAGATGCCCAAGGATGGA AAAGCCAATTTGGTTCTTAACATAATCAAAAGACTTTCAGTCTCATTGAA AGTCTTATTGATTTCTTagcttttattacttttttttacGTTCTAAATCT ATAATTTGTAATTAATTTGTAtatagattttttccaaataagataaaaat attaaataagtCCAGTCTTATCAAAAGAGACCTGTAAGACAAAACTTTCC TTGAGATCATTGAAATCGCGTATAATAAAAGATTGAAACGGTCATCGTAA AGTCTACGTTATTCTTAATACACCTTCTCGACCATAGTAGCACGGTCAGT AGCCCGGggccacttatagctttttgatagactggatggcgctgataagt ggcctgGCGTAAATTGGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005990TCONS_00005990Clytia hemisphaericatranscript
TCONS_00005991TCONS_00005991Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005991-proteinTCONS_00005991-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:57828..65095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.07 0.11 0.39 0.53 9.49 10.23 6.77 3.93 7.43 5.27 13.56 10.73 7.98 15.64 8.28 7.85 0.34 0.25 7.8 8.57 4.53 4.8 6.49 8.9 2.48 0.58 0.07 0.09