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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005990 ID=TCONS_00005990|Name=TCONS_00005990|organism=Clytia hemisphaerica|type=transcript|length=1993bp
CACGGAGAAGTTGAACTGAAATATTctagaaaataataataaaatggAAA
CTGAAATAGCAAGAAGTTATTTGCTTTTGAGCGAGAAAAACACGCTAAGG
AGAGGGTAAAGAAAATTTATCTTTTCCGTTTGTGATTATTCAGGGaaaaa
atcagaCGACCAGCAGGATGGAGAACGAAGATGCATTTAAGGCATTCCGA
CGGGCGGTACAAAACGCCCACCACAAAGAAGACCCAATGTTTATCCCTAT
ACAAAGTCCGCCCTTTAGTAGAATTCCACTAAATGAAGAAACGCCACCAC
GCCCTCATTTCTTGCACTTAGTACTCGTGCTTAACTACAGAGacgtttta
aagattttaacatttttgttgGTCATGTTATCTTTAATTCCGCTAATAAT
GCGTTTCCGTAAGCGACTCAGACATGAGCGTATGTATAAAGTACGAAAAG
CCATACAAACAATATTCGCTTTCTTGAATGTTATATGGATCATTGGGTGC
GTTTGTTTACTGATAATGAGTGCTCATATTTTCTTATCAAATTACCAAGA
CAAAGTTGAGAGAATCGAGAAAACATTTCCGTGGTATATTATAACGATCA
TTTTATGTTGTATAATCGAGATTGTTGAATCCATTTTTGGTCTCAGTGAG
CCAGTTATAACTGTACTATCAACAGAGAAAACAGTGATTGATCTGAAACA
CGGAAACAAATGTAGCCCCTTGACCAGAGCTGACGGTAACAATAATGGAT
GCAATAAGAAAGCAGATGATGAGAAATTGTTATTGGCTTAATTGCGTGGT
AACATGTGAAGAACCTATCATTTGCGGACACTCCCTCGTTAACGGACACT
AGATCCGGACAATCTTTCACTTCaaggaagaaaattttcattaacaGATA
TATACGCGTTCTTTCATTTGGTTATTTGAGTTGTGTAGTTATTGGCGAGC
CATCATTCTTAGCAGAATACTTTTCTTAAAGCCTCAATTAGTCTTAATGC
TGTAATAGGCTCATTTGCAGATTGCATTTTGTTGTCTGGGAGAAGGGAGA
TTTATTCCtttgaaatttcataaatcgaTACTTAGCAATAGTGCTTAGGG
ATGAAATTATAACTTTTTCCAGAGTCGCCTGTGTATTAATACTGGAGCAC
TTTTTAAAGTGTTTGGGTAAACACACTAATATACCCCTATCAACCCTAAG
TGGTACAGTCGTCTTTCGAGGGGATTGGTAATGAATTTACAGGGAAAATT
TGCGACTTTTAGCCATTAGCTCAACCAAGTTGACATTGACACTTATCACT
TGTAAGGAAGGGTATTTTACATTTTCCACAAGAATGGAACTCTTTTCTTT
ACCACTTTTGCCAGTATAATAAACAAGTTCGAGCAAATAAAACCTTCGAA
GAACGGTAACGGTAACGGTATAAGTTTGCCCGAATCTACGGTTAATTTCA
GATGAACTTGGGGTTTTTATTTTGACTCATTTACTAGGTAGGTAAAAACA
ACCCTGCTAATGTATCGTACTGTCTGGCGTGAAAACCAGAGAAATACTTA
TGTTTCCCAGTGTGGAAATCAGCGAATTCTTAGCAATTAACACAGTTTTT
GACACCAGAGATGCCCAAGGATGGAAAAGCCAATTTGGTTCTTAACATAA
TCAAAAGACTTTCAGTCTCATTGAAAGTCTTATTGATTTCTTagctttta
ttacttttttttacGTTCTAAATCTATAATTTGTAATTAATTTGTAtata
gattttttccaaataagataaaaatattaaataagtCCAGTCTTATCAAA
AGAGACCTGTAAGACAAAACTTTCCTTGAGATCATTGAAATCGCGTATAA
TAAAAGATTGAAACGGTCATCGTAAAGTCTACGTTATTCTTAATACACCT
TCTCGACCATAGTAGCACGGTCAGTAGCCCGGggccacttatagcttttt
gatagactggatggcgctgataagtggcctgGCGTAAATTGGC Run BLAST on NCBI transcript from alignment at sc0000062:57828..65095+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005990 ID=TCONS_00005990|Name=TCONS_00005990|organism=Clytia hemisphaerica|type=transcript|length=7268bp|location=Sequence derived from alignment at sc0000062:57828..65095+ (Clytia hemisphaerica)
CACGGAGAAGTTGAACTGAAATATTctagaaaataataataaaatggAAA
CTGAAATAGCAAGAAGTTATTTGCTTTTGAGCGAGAAAAACACGCTAAGG
AGAGGGTAAAGAAAATTTATCTTTTCCGTTTGTGATTATTCAGGGGTGAG
TGAGTTTTATAagctcttaaaggttttgtttaaaaaaagagtgatatcgt
ttgcctaCTCATCAATTCTAATGGGATtctaattcacaagctttttcatg
ttggattgacacggatgtggagcaagattgttcAGAAAGAGGAatagaaa
aacatttctttgcttatatcagcataatataacaataggcagacactgtt
atagtatgaaatatgtgtctgatatgaaacttatgtaaaaataaaacctt
taagtcgTTAACAGAaacataatttgaaaaaataatttgtaattCACATT
TTCAGTGAGTTTCAACTTTTTGACATGCCATGTGGTCGCCCTACTTTAAA
CTTAATTGTTATGTGCCTTTAAGATACGCGATTTTgtgtaagaacatcca
aatcttttataacacccctgtctcacagccccggtggaagcTTTTTCCTC
AGTCGGGATAAAAATCCCTAtttaaatcccaatggggatagaaattcttt
tgtatcaatccaatggggatggttttggagtgcaatttttataCATGAAA
TTTCGAGtggagatgaaatcaaagtcatttttcCCTGTCATTTTCAAGGG
TACTTTTCCACCGAGGACGAAACTGTTGCTAAATCTACCATTGGGGGACC
CCGcgggtttgtgacacaggggtgtttttgtAGCCTTCGGATAACTTTTT
GCGTCTGAagaatttaaagatttaaaaaaaaattgtttcttaatttcacc
attttttgtgAGAACGTTTCtacaattttctaagaaatttttAATGTTCT
TATAGCTTGTTTCTAATAATatggccatcgaaaccttatgttcatatata
gtttgttcttattaataaAAATGTTTACCATAAGCTCGCCAGGACAAAAT
AACAGCTAGTGCCCGAGGGTTTTCCACGATGGTAAGTGGGCGTGGTGGGT
ATTTACCGTATTTGGGATCAATTTCCCGGGTCGGCAATTATTTAAGAGTG
TAATTGTCTTGTCAGTGTAAGAAATGAGTGAGAATACAGCTAGGACACAT
TCTGATACACTTGCTTTCTTGCTATCTCTATAAAGGGCTACATAAACTAC
TCAATATAGGTTGATAatatattgctgagtgccggcaatatattgaaaag
gtgtcagcaatatattgtcagctcgatttgcaatattctaataatatagg
gggattgtttacagaaagaaaattcctttttaaaatAGAGCACTTGTTAT
TTTCTTCGTACATTACGATCCGCAAACTATACTGTCGAATATTGCTCACc
tatatattgtgtagtctaattAGCCCTTAAGATACTTTAGAATCTCTCAA
GAGAGCAGAAAAACCGTTCGAAATGCAAAGATGTTCGATTTTTGATGATT
TGTGTTTGATTTAATTCTTTTCGTGCACCTGGTATCACTGCTGCCACAGC
GTCTTCAAGAATAATAAACAGTCGAAACaatagaaaataaacaaaaaaca
ttttcaaattgtttGTTTAAACATGTTTCGAATTTCTTCTGTTCGAATGT
GAGAAATATCTTACATTCCCAAGTATATGAGTATATTAAAAATTTGTCGA
TTCAGAAGCTTACATTTCATTAAAAATCGTATATCATTATAACTTAAATT
CTTGAATTATTGATTCTAGGGAGTTCAGTTCTATAccttaaaataatatt
tcaaatcaGATCTAATATTGATGCGTCTGTTGATACATTGCATAGCGGCT
AGctagttttgttttcacaaaCATTCAAAAGCCTCCAATTCAGTATGATT
TTGAATGCAGCTTTCGAAGAACTCTCCACCTCTGGGTGGAATTCAGCCAG
TACGGGAGTCGAAGTTTTAAGCAGGAAATTATAACGTTGTTGGTTACAAT
TGACTAAACTGGCTATGTTAAAATCAAAGATACTGAAGGTTAAAATCTAT
GTATATTAGAATGTTTTCATATAAATGTGAAGGAGGGTGACCAAATTAAA
CAAAAAGACGCTGTGATTTTGTTCGAATAAACGCGACCACAATACTGTGC
TATTGGACTCCCTCAAATTCCATAATATGATAGATTTTGAAGGGCATCAT
TCGTCTCAGGTGAAGAGACAATTTTGTGATTAAACCAGTCAGAAAAATTG
TGATATTACGTGTGTAAATACAATAGTCATGTTGGAGGGTACTGAAATAC
CGTTTTGACTTATTCTACTGAGAGTTATTtacatttcaatttttgaagtc
aTAAAAGAATCTCAAATTGGTaaggtttctttttcttttttaagggaGAC
ACTTTACTTCTAGCATCTAGGGCATCTTTATCACGGGGTTACTTCTCACT
TTCCTTAAAACTGTATTTAATACTTTGTAACACAATTCTTCAAGAATTAG
ATTTcttattcttaaattttaatCTTCAATTACAATCCAATTAGTATTAT
AAAGTAGATATAGAGGTATCATAGTGGATGGATACGATGGCCCAGAAGGG
CCAAAacagttcttataaatttgtgaactagaactgtctagggtcaatgg
cccagaaggctcaagtgacactgcgcacttctgactttttgtcaGGGCGG
AAATTTCCAAGCGAGCGGCCCGcgcgatgaaatttttttcggtctttaaa
atgaatgtcgagTTACGCANTTTTTTTCAGGGCGGAAAATTTCCAAGCGA
GCGGCCCGcgcgatgaaatttttttcggtctttaaaatgaatgtcgagTT
ACGCAAAATGAGTTAACATTTCTGAGTTGTTCATATCAAGAGTTACAGGC
TAAAATTTCTGAGTTAAGTGCTAGTCAGCAAAATCCGCCCCAGTAGCAAA
AATCGGGGAAGCTAAAANccccccccccccagtggcaTAAATCGGGGAAG
CTAAAAGTgaacaaatatcaactttgtttttttttgcctcCACGCCGCTA
GCATTTTCCGCCATTGGACCACCCTAGTGCATGAAAACTAGAAAGTGTGT
GGgtgtgttttgatttttctgctgTGAACGCCAGAATCGAGAATCTGAGA
ATCTacaggaaggaaaataactcgaaaatttaaaagaaacgaaaccgagt
aaaaaaacgagaaatgattcgaaaatttaaattagttaAGATACCATCAG
AGATAACTCGAGATTTTAAATTCACGGGAAAAAAACGACCTACAAAATTG
AGAATGACGTCATATAgaaggtacaaaatgacgtcaaaatttccgaaaaa
tgacgtcataactcggttttttcgtaacttggttttttttaactcgagaa
aaatagCTCGGGATTTCCGAGCCTCTTTGTTATTATCATTAACTCATTTA
TTACAACTCGGTATCTATTTTGTTGACCAGAACGGCTATCTTTCGAGGGG
GACTTTTGcgtctctaaaatatttttagaagtgcgtagtgtcgtcacaaa
aaaactcggaagtgcgcagtgtcttgNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCAGTGTCttgtgagccttctgggccatgaccctagaca
gttctagttcacaaattttataagaactggaagtgcgtggtgagccttag
gggccatcgtaGATGGAGGCTTGTCGTATCTTGGATcgcgagatttacgt
ttggctacgtttcaagagattcttctcccatcccAACATCGCTTTATTTC
ACTCACAATTTTATTAACGCAACACTAAGTTTACTCTATGAATTTGATTG
GATGTTGAAGGTTTAATTATCACACTACATTTTTATAATACAtccaattt
ttgaagccttcggatgttcttaacgttttgagttttaagcctaaaaatgt
tcttaacatgttcttattttgaccaattattgagtatttttgctcatctt
cctaagaaattgggtgttttagagtctgcaaagctttaaaatgttcttaa
cttgttcttaacattttggccgtggaagtcttatgttcttataaagttta
taaagtttttataaaaaccaggCCGCCAGCATCCTTCAGATTTTTTGTTA
TAAGGATGCGAATCGGCGTCACGACCGCTTATTTTTGCCAAgcaagtttt
tttaaatgacagaaattgttGACCTCCTTAAACTTTCAGGAAGAAGCATa
tcacacgttttttataagaacaaactattttaaacataaggtttcgatgg
gcaaaatattaagaacaagttaagaacatttaaagggtttataggctcta
aaacacccaatttcttagtgAAATGGACAAAGATTcttaaaaaatggcga
aaatcagaacatattaagaacatttttagacttaaaacttaaaaagttaa
gaacattcgaacgTAAATCTTCAGAGATGCGCGAAGCCTACCAGGAGGCT
TCCTGTTGAAGCTCGCTTGTTCTTATTTCaaaagcaaaattattttagat
ttaATTGCAATCACCTTTAGTGTGCTCATAATTAAGGCAGTTTttaatta
agaaaaaataatgacTCAAAATAAGTTGCCAAGTAAGCAAATGGCAATTT
TGCTGAATATCATTATGTAGCATTTTTTCCTCGACAATTTGCCTTTTATT
TTGCTTAAATgtaaacacgttttttttattagaacacctaaaatttggct
gagcctggatgtgcttatttttttAGCAATTTTCAGCCTAAaatgttctt
aaatgcgttcttaatttttcagactactctaaatcgactaACAAGGAAAG
TTCATTTACTCTAAAGCTCTTTTATCAGGGTTTGTTTTATAAACAAGAGG
CTTGAAAATAACTTAgggtttggaaaaatttgaccaACATGGATTCTTTG
CCGGGATCGGGTTTTGACtggtaaaatatttcttaaaaatttaataTATT
GGGCAAAGTAAAAATTGGActggaaaaaaatcgaagatAGATATTATGTA
GTGGTTCGGTTATGAtgcaaaaaggttttgaaataaaatatttaaacgGA
CATTGGTGTGAACTCTGATACTTGTTAAAACACTTCAATGTAAACTCGAA
AGGGCTGTTATTATATTATGCATCTGCGAGTAACATACATGATCTTTCTC
TAATGGAGGGcattttttcatacttttttatgTCAGCAAGTTTTTTAAAt
gtataatataataaaatcCATAAAAATGATCCGGCGATTCTTTCAGTATT
GTTTGAATTCtttatttcagaaaaaatcagaCGACCAGCAGGATGGAGAA
CGAAGATGCATTTAAGGCATTCCGACGGGCGGTACAAAACGCCCACCACA
AAGAAGACCCAATGTTTATCCCTATACAAAGTCCGCCCTTTAGTAGAATT
CCACTAAATGAAGAAACGCCACCACGCCCTCATTTCTTGCACTTAGTACT
CGTGCTTAACTACAGAGacgttttaaagattttaacatttttgttgGTCA
TGTTATCTTTAATTCCGCTAATAATGCGTTTCCGTAAGCGACTCAGACAT
GAGCGTATGTATAAAGTACGAAAAGCCATACAAACAATATTCGCTTTCTT
GAATGTTATATGGATCATTGGGTGCGTTTGTTTACTGATAATGAGTGCTC
ATATTTTCTTATCAAATTACCAAGACAAAGTTGAGAGAATCGAGAAAACA
TTTCCGTGGTATATTATAACGATCATTTTATGTTGTATAATCGAGATTGT
TGAATCCATTTTTGGTCTCAGTGAGCCAGTTATAACTGTACTATCAACAG
AGAAAACAGTGATTGATCTGAAACACGGAAACAAATGTAGCCCCTTGACC
AGAGCTGACGGTAACAATAATGGATGCAATAAGAAAGCAGATGATGAGAA
ATTGTTATTGGCTTAATTGCGTGGTAACATGTGAAGAACCTATCATTTGC
GGACACTCCCTCGTTAACGGACACTAGATCCGGACAATCTTTCACTTCaa
ggaagaaaattttcattaacaGATATATACGCGTTCTTTCATTTGGTTAT
TTGAGTTGTGTAGTTATTGGCGAGCCATCATTCTTAGCAGAATACTTTTC
TTAAAGCCTCAATTAGTCTTAATGCTGTAATAGGCTCATTTGCAGATTGC
ATTTTGTTGTCTGGGAGAAGGGAGATTTATTCCtttgaaatttcataaat
cgaTACTTAGCAATAGTGCTTAGGGATGAAATTATAACTTTTTCCAGAGT
CGCCTGTGTATTAATACTGGAGCACTTTTTAAAGTGTTTGGGTAAACACA
CTAATATACCCCTATCAACCCTAAGTGGTACAGTCGTCTTTCGAGGGGAT
TGGTAATGAATTTACAGGGAAAATTTGCGACTTTTAGCCATTAGCTCAAC
CAAGTTGACATTGACACTTATCACTTGTAAGGAAGGGTATTTTACATTTT
CCACAAGAATGGAACTCTTTTCTTTACCACTTTTGCCAGTATAATAAACA
AGTTCGAGCAAATAAAACCTTCGAAGAACGGTAACGGTAACGGTATAAGT
TTGCCCGAATCTACGGTTAATTTCAGATGAACTTGGGGTTTTTATTTTGA
CTCATTTACTAGGTAGGTAAAAACAACCCTGCTAATGTATCGTACTGTCT
GGCGTGAAAACCAGAGAAATACTTATGTTTCCCAGTGTGGAAATCAGCGA
ATTCTTAGCAATTAACACAGTTTTTGACACCAGAGATGCCCAAGGATGGA
AAAGCCAATTTGGTTCTTAACATAATCAAAAGACTTTCAGTCTCATTGAA
AGTCTTATTGATTTCTTagcttttattacttttttttacGTTCTAAATCT
ATAATTTGTAATTAATTTGTAtatagattttttccaaataagataaaaat
attaaataagtCCAGTCTTATCAAAAGAGACCTGTAAGACAAAACTTTCC
TTGAGATCATTGAAATCGCGTATAATAAAAGATTGAAACGGTCATCGTAA
AGTCTACGTTATTCTTAATACACCTTCTCGACCATAGTAGCACGGTCAGT
AGCCCGGggccacttatagctttttgatagactggatggcgctgataagt
ggcctgGCGTAAATTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005990-exon-sc0000062-1491911889:57828..57972 | TCONS_00005990-exon-sc0000062-1491911889:57828..57972 | Clytia hemisphaerica | exon |
| TCONS_00005990-exon-sc0000062-1510915933:57828..57972 | TCONS_00005990-exon-sc0000062-1510915933:57828..57972 | Clytia hemisphaerica | exon |
| TCONS_00005990-exon-sc0000062-1575043694:57828..57972 | TCONS_00005990-exon-sc0000062-1575043694:57828..57972 | Clytia hemisphaerica | exon |
| TCONS_00005990-exon-sc0000062-1491911889:63248..65095 | TCONS_00005990-exon-sc0000062-1491911889:63248..65095 | Clytia hemisphaerica | exon |
| TCONS_00005990-exon-sc0000062-1510915933:63248..65095 | TCONS_00005990-exon-sc0000062-1510915933:63248..65095 | Clytia hemisphaerica | exon |
| TCONS_00005990-exon-sc0000062-1575043694:63248..65095 | TCONS_00005990-exon-sc0000062-1575043694:63248..65095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:57828..65095 + |
Blast
The following BLAST results are available for this feature:
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