XLOC_002765 (gene) - C. hemisphaerica

Overview
NameXLOC_002765
Unique NameXLOC_002765
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000049:704287..713182+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002765 ID=XLOC_002765|Name=XLOC_002765|organism=Clytia hemisphaerica|type=gene|length=8896bp|location=Sequence derived from alignment at sc0000049:704287..713182+ (Clytia hemisphaerica)
AAAGAGTTTCACAAACAACAACATGTGAACAATGTTCAAACAGAAATAAA CATTGTTGGTTCAGAAAGTGTGTCCATCTGTAGCCTCAAAACTAAACTTC CAAGTTTATTCAGTagaatgaaattcaaaatggtagacatgGAAATGGCT GTTAAGGAGCTGGATTCCATTAACATGTAGAGAAGGTATTTATGCATttc gaaatttatttgattgtttGATGTTTCTTACATAGCAGACCCACGTTACG ACCAAACCTCCTCACTATTCAAACCATGCACATTTCGCATTTCATCCAAA GTTTAATTATAATGAGTAAATTCGAAACTACTCTTGActcttttgctttt gttttcgaTAATTCTTTTAGCATTTCAACCCTACCGTTGTGTTCTTACCG CGAAAGCTCTAAACATGTTATATATGCTTCAATGATTCAAGATTTTGATT TAGTGTAGTGTATTTGTAGAACAGACATTTcgctttttgttttgttggct tTATACCGGTCAAAGTGGCAGTGCTGATTCGTGAGGCTTGAGATCTCCTG TGTTCACTTCTACATCTCCATTGCATCAtcaaaaactcactttttttagA GAACTAGTAAATATTGGTTCAGTCTCCAGGCTATTAATAATTTTGCATAA GTTTTCAGGCTTAAGTTCTTAATACGCTTAGGTTTTGACTGAAAAGAGAT GGAATCCACTTTTTTCCTCATTGGAGGCTTGTATTGCCCTTACTCAATTC TAAGTTTCAGTCCAATTTCTTCCTTATGTTTTCATggcatttttcattaa aagaaaacgtgtaccaGAACGTTGGCTAAAAACATATTTCTATGAATATT GCTTAGTGATACACGAATACATTGTCATGTCGTTTTGCCTGGTAGCTTGC ATGTTATTTGCGCAGTTGCCATTCCTGTTCAAAGCACAAAAGTTTATATT GTGTAAATGTCTTTATATTAAAATTCATTGCATTAGATTTTCTTCAGTTC CCTGATTGAAATTTGTCGTTTGTTTTTAGAATGCTGTTGAAATGCTAAAT AAACGACATAATGTTACACTCAGAAATCGCTTCCGTATCTGTTTGTATAC ATTCCTCTTCACATCCGCCATCTTGGTGTTCGCCGTCAATTCATGGTTCC AACAGAAAGATGACTTCCACGCTGCGGATGGAACAATATATAGtaagttt tgttttaaatttcggCCACCTGGAAAGAAAGATTTACTCATGTATTTCCC TTTCCTTGCTTACAAAAGAGTGGAATATTTCGAAATCTTGGACCGAAgta cagtaaaacctccaaaTAACGGACACTTCGCAGACACTCTAAAGGGTGgt cacctctgattagcggacaattatatttttccagccATTTCCTTGTCATA TCCTCATGAAATAGTTTCCGAAAGGAGGACACGATCTCCTCAACATAGAG GGTACAAagtttttctggaatagcccatttgaATAATCATTCTCTTGTTC TTACATATCCTAGGGTCTCTAAAAAAGCACTTCGGACCAAAATTTTACAT ACTTGCCTTGCCTTGCCTTGCCTTGCCTTGATTCATCCGTGAGGTGAATC ATCGACAAAGTCTTTTTTCCACTTTTGACGATCTGACATGACTGTTAGCA AATCTTTACCGGCAAGACCAGTTTCCTCTTCAATAATCAATNATTTTAGT GTGAAACCTTAGTTAGAAGTAATCGAAGTTCGAAGAGCGTAATCCAAGAC TATGACGAAAAGAAAGGGTGCGAGCGGATCGCCTTTTAGAACACCTGTTT TAATGGAGAAAGGTTCGGTTTCTCCCTCTGGAGTGACAAATGAAGCGGTT GTGTCTTTGTATAAGATTTTAATGGCATTAACGATAGTAACAGGAATTCC GTAGGCGGTAAGAATCTCAAACATTCTTGAACGATTAACGGAGTCAAAGG CTTTTCGAAAGTCAATGAATGATATGACGGCTTCTTTCTTGTGGTTTTTC AGTTCTTCGACGATTCTTCTGAGGGCAAGGACATGNATGTTATCAATTTT TCGGCTGGTTCGTTATGTCTTTAGACATGACCTGCAAGTTTGAGTCGCCG TTGGCGTACAACCGATGTGATACGGGGAAGATTGCCGTAAATTTGTTGGA TCGTAGCATGTTGTTGTCAAGAAATATTGTATATACGCCTTAGCATTTTA GTATAAACTCCATCAAGTCGTTTACTTCGTTTGACATTGAGACACCAGGA TTCGGATCCGNGATTTGCGATAGTGCAATACCTCTGTAGTTGTCTGTTTT TGTTAGATCACCTTTTTTCGGGACTGGGATTAGATTTGCGATTCCCCGTT CAGGAGGGCGATTGCCAAGGAAGGTTTTGTTGCAGAACTGATGGAGTTTT TCTCTAGTCTTAGGCAATTTCCAAAACTCTGGAGGTAGCCCATCGGAACC TGGGGCTTTTCCGTTTTTCAATTGTTGAGCTGCTTTGTCTGTTTCCTCTT TAGAAAATAAGCCAGATGGGATTTCATTCCATTCATNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACCTTATGCACA GGATCAGGAGCAGTCCGATTTTGAGGTTCTGAATTCaaaaggtttttgaa atgaGTTTCCCAACATTTAAGGCGATTTTCTCCTTCAATGAAGATAACAC TGCGAGCTTTTTTGCCAGAGATTTTCTTTCATGTTTCACTGATGAGGGTG ATGCAGGgtgttcaaattattttaagatATCATTGATGCGAGTGTCTTCA GATCTGTCGTAAGTGTTTCTTAGGTTGATTTGAGCTGTTTGAATAGCTCT GGTTGATGCTCTTAAAGTGGCTTTCCGAGCAACTACTACATCGTGAACGT CAGCAGAGTTTGTTTGAGGAGGACGATCCCTTGTAGGGAGAAGTTGAGAA CCTATGGCAATTTTGACGAACGAAGCGTAAGTTTGTTGGTTTCTTGGAAG GTTATCAAACTGGGTTTTAATTGAACTATCAACACGATTGGAGAGATTTT TGTCCCTAGGTAGATATTGCCAGTATAACTTCTTCACAGTTGTAGGAGGA GGGCGACGGACgctaagttttatttttgccgATACAATTCTGTGATCACT GCCAACAGGATGAGAAGACGAAAATGCTTGACAATCAAGGACACTGTTTC TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGTCCAAAGTTTCGCCG TAGGTTTCTGAAAGGACGTATTTCCAATGATTAGATTGAATTGATTAGTA AAATCTTGTAGGAAAACACCATTTCTGTCGGTTATAGTGTGCAAAGAAAA TCTGTTGTTAGTTCTTGCGTTCATATCTCCACCAATGATCAGCATATGGT GGGGAGGGATCGTATCAACGATGTGACATAAATCATCGTAAAAATCAGAA ACCATTTCTTCGGGTAGTGAATTATGTGGGGAATAGCATgaaatgatgac agttttgggATTTCCTTTGAAGGTTGCGATAACAATACGTTCGTTGATTT TCTTTACTGATAAAAGAATGGGAAGAAGTTTAGAGTTAATGGCGATGCCA GCACCATGAAAAGCAGCACCTTGATCGTTACGTTTGGCAGAAGCAGTGAA CAGTGTAGATGAGCCAAGATTATGAGCAACGATGTCAGGGTCTGTAGGTT TATGAACAAATCTGTGTTCTTGAATACAAGTAATATCAATGGTTTGTGAA TGAAGGAGCTTATTGAGTTCAACTATAGACGAGTCGGTTTGTAGTGTTCT ACAATTTAATGATGCGACTTTGAACATCTTGGAAGGTTTGGAAAGGCCAT TTTTACGATTGCGAGCATCAGAGTTTCTCCGCCGATTATGGTTGAAGATA GTCTCGTCATTGGTTACATTTGCAACAGGGTCGGATCGGTTTAATGGCTG AGAGTCAAGGGCTTTAACCTTGGTGCTATTAGTGGACTTTGTCATGCTTT TTCTAATGGCTAAGATTGAAGTGAGCGGCTCGCCACACCTGTTCACCTGA TACGGTTCCCATGTACTAGGGCGGTATGCCTTCCCGTTGTCNTGTTCACC TGATACGGTCCCCATGTACTAGGGCCGTATGCCTTCCCGTTGTCATCAGA AGACGATCTTCCGTGAAGccacgttgtttcgacgttttcgAAGTTTTTCA GCCCTTAGGAAGTTTTACATACTTAACCCCTTATTAGTAGGTACATTATA CCATAATTGTTATTGCTATTGATGGTATCTGATGTTGTCTTCTTTCCAGA CTCGAGAAAATTACAAGAATACCGTCCAGAATGGTTTCGATCCTCTGCAG ACTTGTATCGTCGTCAACTGACCCAAGATGCGAAAGCTCAAACACCAACA CCCCCTTCGCAACAAACAAATCCTACTACTCAACCACCAACAGAATCACC AACCTTCTCTTCAACAGTCCCTTCAATATCAACATTCAGTTCGCAATACA CTACCACACCATTCAACAAATCCACAACGAATAAAACTAGAAATGCAACC GTCGACGAGTGTGACATGCCAGCCATCGCAGAATTCCCAGGAGACCTTTT CACACAGAAACAACGAATACACGGAGCTTTTTTAGTTCACGCTTTCATCG CAATCTACATGTGTATAGCATTAGCCGTCATATGTGATTATTATTTTGTA CCCTCACTGGAAGTGGTGTGTTATCGATTGGACTTGCAAGCTGATGTTGC TGGAGCTTCATTGATGGCAATTGGGTCATCTGCTCCTGAACTTTTCGCCT CCGTTATCGGTAAGAAcgccttaagggctctgaccatagtgaatttttca taattgctgtgtttaaaatgtgttttctgactgatgtaaccaacaaaaat atggcatgttatacattttctgttagacaaactattcctgaatctgaaaN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaataaaa atttttgcggaaaatatttgtaaatgcttctttgtctcgaaatcttcaaa atagtggtgtTTCATCAATTtctcatctggattttgcttaaaaaaacagt cataacttttgacacatctttttagaaaagttttccgcaaaatttacaat agttcaattctttgcggacagtttgaaaaaagttcaagacaaaaaggtta attacccattaaaacttagcactttttataaaagaaggtgatgcaacata ttattaacgtctttttaaagttaataacgtcatttttgcaattaagttct taattactcttaaggggtttgattaaaaagcaatttataaaggcaattct ttgttaaaagtgttaaagaatctaaaacataacttttatgctcagatact aaaattatttttctgactatggtcagagcccttaaatattTCAGCTAATA TTTGTCGGCTAAAAGAAACAACGTGGATGAACGATACTCtacaaaaatat gtcaaatgACGTCATATGAAAGATGACATCACGAGCATCTCTGTTGATAT CTTTTAAACCGAATTTCCTAAGCAAGGTTTAAATCGCATGGATGGGTATC ACTATGGAAAATATACCCATCGAagtaaatatttctttattattATCAGG TGTTTTTGTGACGAAAGGAGATATCGGGATAGGAACCATCCTAGGatccg ccatctttaatgttCTTCTGGTGATTGGGTTGTGTGGTGTGCTAACCGGT TTCGTAAGTATAATGATGACTTgacaagattttttattttactttctaTA TTTTactttgcaaatttttgttgaaataaaAGGTAAGTGTCTGATGTATT GTGGTGTTGCTTTCCCTTTTTCACCGGCATGATTTAGCCAACGGACTTTC ttgtaaacaaacaaataatttttttattactagAATTTGGAACTAGCCTG GTGGCCATTGATGAGAGATGGGATGTGTTACGCGTTTAGTCTAGTCATAC TGGCCATTGTGATTGTCGATGAACGAGTTGGATGGTAAGACAATTTATGT ATTATCATAAGAAATAAAACGAtcccagaaaaaaataatttgttcacctg ttttaacaaaaatccgaaaatccACAATTTTTAAGGTTAGTGTTTAAGTT TTTGATAATTTCTGGCAACCTATATGGTGCCTGGTAACAAGCTGTTCAAA CCTCTGTAGTAAGCACCCTCCTTATACAAGTAATTCTGAAACGCTCCCCA GTCGATAAAATTGTCCATATAACCTCCATAACTTAATTCATCGGAGTTCA TAATGTGGACATTGGACCAACTAACGTTGGCTTGGCAAATGAAGCTTTac attgtgttttttttcttccaggCTTGAAGCGGTGATCATGTTGGTATTTT ATTTGTTGTATTTGGTGTTAATGTGGAAGAATGAGAAGTTGGAGAAGTGG TTTTATTTGTACGCAGGCTTGATGGAGACGTATGAAAAACGTTTCGGTGC GTTGGAAGAAGAAACGAAcgatgaagaagatgaagagGAGCACAAGTTGA CggaaaaagaacgaaaaagacATGAGAAATATCTAAAGATTGGCAAAGAA GGGGTCTATCACCCTCTTAGTCACACTGACTCCGGTAAGTCCTCTTCTGC TATACTTGTGACAATGTAGAATCTTCCTCTAACTTGCCATCCCAGAAGaa actttttcgaaatttgtaaGTTTTTTTCAGGCAGCAGAATGTGAAAAACA ATCTTACGATTTGCTTTTGATAACTAAAGAGTGATTTCTCGACCTGAGTA CATCTCTCTGGCCACTTGCTCGGAAATTGATATTTTCCTCTGTTTTAGCA AATCCAACATTCTTGATATGCTATTGGAATTTTACAGGCTCATTTCATCC ATCACATAcaaattatttgtttttagaAATGAGCAGTGAAGATTCTATTG ACGCCGTTTATCCTGACGATGATCCTTTCGTATTAACAGACATCCCCTCA CGATGGACGGAGAAAATTGTGTGGGCGTTCCTTCTCCCCATCCGTGCATT GTTCTACATCACCGTGCCCGATATCCGATACAAAAGCATGAGGCGTTTTT TCTATCTGACTTTTTTCATGTCAATCGTTTGGATTGGTGTGACCACGTAT ATTTTGGTTTGGATGACAACCGTGGTCGGTTTCACCTTCAGTATCCCCGA TGCTGTGATGGGTTTGACTTTCATCGCGTTTGGTAGTAGTGTCCCTGATG CCTTCGCAAGTATCATAGTTGCACAGCAAGGTGAGAATACTTCCAATATT CCATGATTGAAAGTCCTTCTATATTGCCAACACGTGCATAAAAACGAATT acacacccctgcctcacatagccccggtgaaacttttcgTCACAGCGGGG ATAGAAATTTCTATCGGAATCTCAATggggaaaaatatttattgtcCCAA GATCAAAAAATAACGTGGGGATTgatttggagtgcaatttttaaacattg aatttcgaatggggtgaaatcaaagtcaaattccGAGTTgggtagacgat cctatcgtctacacaagatcactaaaaaagggaatagtttaggagaggcg tgataaattcgggtgatgtaagcagtggcggagatgtttacagttccaaa actctaccacCACTTTTtccccgtaaaccgccctgacgcccgaACTTTTT CCCGTGTTTACTgacctttaaacggacgatagcatcgtctacgaATTgcg ctgaaattgtagggtacttttctcaccggggacgaaatttttgccaaatt ttcaagtGAGGCGGAGGTAACCCAGggtctgtgaaacaggggtgtaataa CTAAACCGGAGACTGGTAGTTCCTCTATAAAAATTTTCTCTCTCCTATCT ACATTTTTACTTTCGTAAAAGTTTCAAATCGTGTAGTCATAAAGGTCAAA TCTGACTTTTCTCGTCCTGGTCAGAAACGATGTTATGAAAATTGCtctat gaaaaaattttcctgaatgatgaatattagaaaaaatctactattgatga aaaatttcttttccgtCAATTGACCCTCTCTATCTGTTCATCATTACAGG CAAAGGAGACATGGCAGTTTCGCAAGCAATGGGGAGCAACGTGTTTGATA TTCTTCTTGGTCTTGGCCTGCCATGGATCCTCAAGACATTGATTTTCGAC CCCGATTCGATCATCGAAGTTCAGTCGGTCGGTCTCATCATTTCTTGTTT CGCAATCTTCATCAGTGTGTTGTTCGTTATTGGTTGCTTTTATTATTATG AATTTAAACTGACCAAGAAAATTGGTTGGGCGTTCATTGTGGCGTACTTT GTGGTGTTGTTGATATCTGTTCTCTTGGAATTGTTCTTATGGAATAATTA TCATCTTCCTACTTGTAAATATTTCTAGTTCTCAGCCTATTCTTATTATT GATGGTTCATGAGCTGAAActgttttttatatgttttgtgATCAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004880TCONS_00004880Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004880-proteinTCONS_00004880-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:704287..713182 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SLC24A5PREDICTED: sodium/potassium/calcium exchanger 5 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3 0.24 0.15 0.13 1.36 1.4 8.84 11.16 3.01 2.02 7.1 4.78 7.45 7.87 4.85 11.67 6.34 6.71 2.71 3.04 3.01 2.82 2.46 1.88 3.81 5.3 0.42 0.06 0.06 0.17