TCONS_00004880-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004880-protein
Unique Name	TCONS_00004880-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	603

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004880-protein ID=TCONS_00004880-protein|Name=TCONS_00004880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MLNKRHNVTLRNRFRICLYTFLFTSAILVFAVNSWFQQKDDFHAADGTIY
NSRKLQEYRPEWFRSSADLYRRQLTQDAKAQTPTPPSQQTNPTTQPPTES
PTFSSTVPSISTFSSQYTTTPFNKSTTNKTRNATVDECDMPAIAEFPGDL
FTQKQRIHGAFLVHAFIAIYMCIALAVICDYYFVPSLEVVCYRLDLQADV
AGASLMAIGSSAPELFASVIGVFVTKGDIGIGTILGSAIFNVLLVIGLCG
VLTGFNLELAWWPLMRDGMCYAFSLVILAIVIVDERVGWLEAVIMLVFYL
LYLVLMWKNEKLEKWFYLYAGLMETYEKRFGALEEETNDEEDEEEHKLTE
KERKRHEKYLKIGKEGVYHPLSHTDSEMSSEDSIDAVYPDDDPFVLTDIP
SRWTEKIVWAFLLPIRALFYITVPDIRYKSMRRFFYLTFFMSIVWIGVTT
YILVWMTTVVGFTFSIPDAVMGLTFIAFGSSVPDAFASIIVAQQGKGDMA
VSQAMGSNVFDILLGLGLPWILKTLIFDPDSIIEVQSVGLIISCFAIFIS
VLFVIGCFYYYEFKLTKKIGWAFIVAYFVVLLISVLLELFLWNNYHLPTC
KYF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002765	XLOC_002765	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004880	TCONS_00004880	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004836	Na_Ca_Ex
IPR004481	K/Na/Ca-exchanger
IPR004837	NaCa_Exmemb

Vocabulary: **Molecular Function**
Term	Definition
GO:0005432	calcium:sodium antiporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006816	calcium ion transport
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005432	calcium:sodium antiporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 323..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..107
IPR004836	Sodium/calcium exchanger protein	PRINTS	PR01259	NACAEXCHNGR	coord: 479..492 score: 63.53 coord: 440..452 score: 39.27 coord: 466..478 score: 34.01
IPR004481	Sodium/potassium/calcium exchanger	TIGRFAM	TIGR00367	TIGR00367	coord: 163..579 e-value: 1.2E-77 score: 259.1
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 164..307 e-value: 6.5E-27 score: 94.2 coord: 435..585 e-value: 9.6E-26 score: 90.5

Blast

[Close]

BLAST of TCONS_00004880-protein vs. Swiss-Prot (Human)
Match: NCKX5 (Sodium/potassium/calcium exchanger 5 OS=Homo sapiens GN=SLC24A5 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 3.524e-101
Identity = 179/488 (36.68%), Postives = 280/488 (57.38%), Query Frame = 0

Query:  118 TTTPFNKSTTNKTRNATVDECDMPAIAEFPGDLFTQKQRIHGAFLVHAFIAIYMCIALAVICDYYFVPSLEVVCYRLDLQADVAGASLMAIGSSAPELFASVIGVFVTKGDIGIGTILGSAIFNVLLVIGLCGVLTGFNLELAWWPLMRDGMCYAFSLVILAIVIVDERVGWLEAVIMLVFYLLYLVLMWKNEKLEKWFY-----LYAGLMETYEKRFGALEEETNDEEDEEEHKLTEKERKRHEKYLKIGKEGVYHPLSHTDSEMSSEDSIDAVYPDDDPFVLTDIPSRWTEKIVWAFLLPIRALFYITVPDIRYKSMRRFFYLTFFMSIVWIGVTTYILVWMTTVVGFTFSIPDAVMGLTFIAFGSSVPDAFASIIVAQQGKGDMAVSQAMGSNVFDILLGLGLPWILKTLIFDPDSIIEVQSVGLIISCFAIFISVLFVIGCFYYYEFKLTKKIGWAFIVAYFVVLLISVLLELFLWNNYHLPTC 600
            + T   +     T N+T  +C +   +EFP   FT+++R  G  +++  I +YM +A++++CD YF+PSLE++   L L  DVAG + MA GSSAPEL  + +GVF+TKGDIGI TILGSAI+N+L +   CG+L+     L+ WPL RD   Y  S   +  +I D +V W E  ++L+ Y LY++++  + K+ ++         A L +  E+   + ++     EDE +  +  + R            G+++  S       S   +  V   +DP  + ++P    ++I W   LPI  L ++T PD R K  + +F +TFFMS +WI   TYILVWM T+ G T  IPD VMGLT +A G+S+PD  AS++VA++GKGDMA+S  +GSNVFD+L  LG+PW +KT   +  +  EV S GL     ++ IS++F+    ++  +KL +K+G   +++Y  +  +SVL EL +  N  +  C
Sbjct:   28 SGTSLPQRLPRATGNST--QCVISPSSEFPEGFFTRQERRDGGIIIYFLIIVYMFMAISIVCDEYFLPSLEIISESLGLSQDVAGTTFMAAGSSAPELVTAFLGVFITKGDIGISTILGSAIYNLLGICAACGLLSNTVSTLSCWPLFRDCAAYTISAAAVLGIIYDNQVYWYEGALLLLIYGLYVLVLCFDIKINQYIIKKCSPCCACLAKAMER---SEQQPLMGWEDEGQPFIRRQSRT---------DSGIFYEDSGYSQLSISLHGLSQV--SEDPPSVFNMPEADLKRIFWVLSLPIITLLFLTTPDCRKKFWKNYFVITFFMSAIWISAFTYILVWMVTITGETLEIPDTVMGLTLLAAGTSIPDTIASVLVARKGKGDMAMSNIVGSNVFDMLC-LGIPWFIKTAFINGSAPAEVNSRGLTYITISLNISIIFLFLAVHFNGWKLDRKLGIVCLLSYLGLATLSVLYELGIIGNNKIRGC 498

The following BLAST results are available for this feature:

BLAST of TCONS_00004880-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004880-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCKX5	3.524e-101	36.68	Sodium/potassium/calcium exchanger 5 OS=Homo sapie...	[more]

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TCONS_00004880-protein (polypeptide) - C. hemisphaerica