XLOC_002548 (gene) - C. hemisphaerica

Overview
NameXLOC_002548
Unique NameXLOC_002548
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000045:757988..763379+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002548 ID=XLOC_002548|Name=XLOC_002548|organism=Clytia hemisphaerica|type=gene|length=5392bp|location=Sequence derived from alignment at sc0000045:757988..763379+ (Clytia hemisphaerica)
ATCGTTTCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTG
GCATTTCCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTG
CCATTAGCTATATATTATGGATGCAAACTCGTTAAAGactattttattgt
ttttgcaTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGA
ATTTGGAATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACA
GGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG
ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA
AAATTCTTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTA
GCAGGCTTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATAT
GACAGAAAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGAC
AAGTTTATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAAT
GCTTTGATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGA
GCAAGGTAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaa
agtctgAAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCT
ACAGGTGGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGAT
TCAAGATTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACT
ACAATGGAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGC
GACGGTCTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATC
AAATCTTCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACC
CTGAAACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCC
ATGACAGTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGC
TTCTCCCCAGGTAAATGATTTAGACATCAGACTTCCTTTTAAGTCAAACT
TTGCTACActtatactctcgggtaccaattagccggggggtttggcataa
gcggggggttggaaaaaatctcaaaNNNNNNNNNNNNNGGGGggagggtt
ggaataaaaatgtcaggggtgaaaaatttcgcaaaaGTTAATTAGCGGGG
CCCCcgactattaggtacccgagagtaagtaaAGATCTTGATATTCAAAT
CTGAAAAGGTTCTTTAGAACGTGGTAGATTGTAATTCATAATCATCTAAC
TTCTTGTTACAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATT
GGAAAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACT
TACAAGATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTT
TCCTTCCGATATGAAGAGTAAGCACATATTTGATGAAGTTTTTGCTGTAT
TGGGATCTTGCAGGAAAATATACATCACCTCCTATATTGCAGTGGATAAG
TGATTATTGACCTCCTTAAAAAACAGCAAGTTCAGGCATCAGTTGAACCA
ATAGACTATTCCATTGATAATGAGCTGttaacactgacctttatatatcc
ctggaacaagttactcaatgccggccaagcaaaatattatgatcggaTTG
AGCGCTAGATTTAATTTCGCTTGTACactaatgatgtagcgccgtttgtc
gttaggcaaagtttcaaacactacaatggcttctttgcgggcaccaactt
tcaaaaaacttagtACTGGGTTTGTATAAATCTCAGTGGGTTTTAAACAT
CTTGAATTCAAAGTTTTTGGTTACCTTACTTACTTCTTTACCAATGGAAC
GACAGAAGCTTTTCTTAAAGTTCCCAAACTCTTAACACCTTTATCTGTAA
TTTGCCACTTTTTTTCAGTTACTTGAGTTATGATGCACTGCAGAAACTAT
TGAACGAAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTC
ATACCGTTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAAT
GCATTACATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTT
TCAACATTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGAC
AAAGTGGGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGTG
AgtaatgaaaatttcgaataATGATGGCTTTCAAAGAATTAtactacacc
cctgtctcgcaccCAGTGAGGGTCTTTCGCAAAGTGGGAacgaaaatttc
tatcaaaatcatAATGGGGGAAGAAATTCTATTGTCCCCATATTGCTCAT
AATAATATTCGAtgaggatggttttggagtgcaatttttcaaagtcaagT
CAAATTTAAATCTGCCAGCGGGGCTGAAGTTGTAGGGTAATTTTTCCACT
AGGTACGAAATTTTGGCAAAGCTTTTCAATAGGGCGGGGTCCCAGGGGTA
AAAGAAATTGCTTTGATAGCATCTGTTACtcgagaaagaaaaagaagctc
CGAATCGATTTTATTTTGTATAGCTATGAAATACCATATGAAAAAGATTA
TTATATTACCAATATTACCAGTCAGAAACAACTTCAAATTAGCTCATCTT
CTCGGGAAATGTGTACACCGGGTAACTATTTGGTGGTACGCTTAGGCGAC
TTTCGTTCTTAGACGTTAACAATGTTAATTAACAATCGAAACATATTTCA
TATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCA
TTGATCANGACTTTCGTTATTAGATGTTAACAATGTTAATTAACAATCGA
AACATATTTCATATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAG
AAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTGAAGATTTA
AGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTAT
GAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGC
AACATGAGCTAGGTGaatttctttaaatttctttcaaaatttgtttataC
GGTTTACCCTCTCTTGTTCGATCTGCAAGGGATCAAGAATAAGATTGTAA
AGGTTATANagggctgtactgagaaatattgcccgaggtcaagtaacgac
cgagcttgcgaggttgttgcgttgaccgagggcaatattttcagtacagc
ccgagaAAAAaacggtcattattgtatttgttaaccgtttccttcaactt
tgattgatttttagcgctttatccaggaaaaatagcgaaataaagcagaa
aaaacaagcgaaaagagataaaaaattgctataatttctgacgtcagaaa
taaaaaatgagagaaatgatgtcaacgcattgttcattttcctttgaaaa
agtgacgtcacaatgaattttcctaacgacgggcaactNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtactgagaaatattgcc
cgaggttaagtaacgaccgagcttgcgaggttgttgcgttgaccgagggc
aatattttcagtacagcccgaaaaaaaccggtcatcattgtttttgttaa
ccgtttccttcagcttcgattgatttttagctctttatccaggaaaaata
gcgaaataaagcgaaaaaaacaagcgaaaagagataNTATAGATATTACG
ACATTCTACCTAAGAATGGCTTGAATAATTTAATGGTATAAATTTCCAGA
TCTTGAAATATACATTTCCATAGCCAGGGGaatcaaaaatcttttcctCA
CTGATCTCcaactacttgactggatcgggctACCCGTTTATATGAAGCGT
GTCAAGATTTAAAGGTGActagtccgccatcttgttttcaattcttgTCG
CCAACAAtacgattcgaatgttttgagattccaacgttcgaaaatctaag
gTTGAATTGGAAAACAATATGGTAGACTAGTCTACTTTAAAACTTGGCAC
ACTTCCGCGGGAAATTTGTTGGCAGCTATCATATCTAGTGCGTAAAAGAA
TACGATATCTGATGCCACCGCAAAACAATCAGAATTGAATGTATTTCTTT
TCTTAGATTCGGATGACTACCTCCGATGCATAGTTCGAAGAGGAGCGACC
ACCGTTTACCACCCAGTGGGTACGTGCAAAATGGGACCCCATACTGATGA
TCAAGCAGTTGTAGATTCAACATTGAAGGTTTATGGTATCAAAGGATTAC
GTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAAT
GCACCTACTATCATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGA
CTGGAAAGACAAAAAATCTTATTTGGAGTAAAAATAATCAATGGAATGAG
AAACGGAAATACGACTCCAACTTGCTTCAGTAAATATGCCAGCTTTAGGT
ATTCAAGgtgtttctttaaaaagaattcattAGTAccaaggcgaaaataa
aaaaatgttatgtTTCTNGAattgatgtcaacgcattgttcattttcctt
tgaaaaagtgacgtcacaataaattttcctaacgacgggcaactctggcc
AGTGTAGGCccgcgaaaagaaccaattgcattgcgcaaaaagccgtgtag
cccgctttgaaaaagtaaccggttaacaatgcgTTTTTCTTCATAGAAGA
TAATTTCTAATAATAATAAGATCGTTTTGGGTATNgatttttctgacccg
gccgcagactatggtttcatctatatggttcatcataaagaaaatcaagt
tgaccgttcaagctaaAAAACGTCGTTCGGCTAGATATTCCCTCTTGTAA
ATCAGTaattcgttagtagttgatacattagtattcagggtttacttcat
actgtttgtacataaaagttatcttcaaagttctatttcaatgatccgGC
TGNcttaacttttttcgtttttatcagtttgagttatttatatatcaata
cttttctttttctaaaatgacagatattacatatcttcacta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004529TCONS_00004529Clytia hemisphaericatranscript
TCONS_00004530TCONS_00004530Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004529-proteinTCONS_00004529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:757988..763379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.74	0.74	0.58	0.31	3.5	2.39	3.51	3.5	3.23	4.01	4.39	3.46	17.3	19.09	11.01	11.83	3.48	3.96	4.99	3.8	1.11	1.03	1.18	1.49	4.88	5.01	1.07	1.44	4.24	3.02