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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004530 ID=TCONS_00004530|Name=TCONS_00004530|organism=Clytia hemisphaerica|type=transcript|length=2729bp
TCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTGGCATTT
CCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTA
GCTATATATTATGGATGCAAACTCGTTAAAGactattttattgtttttgc
aTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGG
AATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGAT
GATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGC
AGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTC
TTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGC
TTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGA
AAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTT
ATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTG
ATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGG
TAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctg
AAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGT
GGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGA
TTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATG
GAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGT
CTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCT
TCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAA
CGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACA
GTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCC
CCAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAAC
ATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGAT
CATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCG
ATATGAAGATTACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAA
GAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTG
ACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACAT
CACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTG
CAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGA
ATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAA
GTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATCANGACTTTCGTTA
TTAGATGTTAACAATGTTAATTAACAATCGAAACATATTTCATATCTAGG
GGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATCAT
ACCAAATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGTTGAAGGGA
TGAAATTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAAATGCTTCA
ACTTATCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTAGATTCGGA
TGACTACCTCCGATGCATAGTTCGAAGAGGAGCGACCACCGTTTACCACC
CAGTGGGTACGTGCAAAATGGGACCCCATACTGATGATCAAGCAGTTGTA
GATTCAACATTGAAGGTTTATGGTATCAAAGGATTACGTGTTGTCGATGC
ATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACTATCA
TGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGACAAA
AAATCTTATTTGGAGTAAAAATAATCAATGGAATGAGAAACGGAAATACG
ACTCCAACTTGCTTCAGTAAATATGCCAGCTTTAGGTATTCAAGgtgttt
ctttaaaaagaattcattAGTAccaaggcgaaaataaaaaaatgttatgt
TTCTNGAattgatgtcaacgcattgttcattttcctttgaaaaagtgacg
tcacaataaattttcctaacgacgggcaactctggccAGTGTAGGCccgc
gaaaagaaccaattgcattgcgcaaaaagccgtgtagcccgctttgaaaa
agtaaccggttaacaatgcgTTTTTCTTCATAGAAGATAATTTCTAATAA
TAATAAGATCGTTTTGGGTATNgatttttctgacccggccgcagactatg
gtttcatctatatggttcatcataaagaaaatcaagttgaccgttcaagc
taaAAAACGTCGTTCGGCTAGATATTCCCTCTTGTAAATCAGTaattcgt
tagtagttgatacattagtattcagggtttacttcatactgtttgtacat
aaaagttatcttcaaagttctatttcaatgatccgGCTGNcttaactttt
ttcgtttttatcagtttgagttatttatatatcaatacttttctttttct
aaaatgacagatattacatatcttcacta Run BLAST on NCBI transcript from alignment at sc0000045:757994..763379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004530 ID=TCONS_00004530|Name=TCONS_00004530|organism=Clytia hemisphaerica|type=transcript|length=5386bp|location=Sequence derived from alignment at sc0000045:757994..763379+ (Clytia hemisphaerica)
TCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTGGCATTT
CCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTA
GCTATATATTATGGATGCAAACTCGTTAAAGactattttattgtttttgc
aTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGG
AATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGAT
GATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGC
AGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTC
TTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGC
TTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGA
AAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTT
ATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTG
ATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGG
TAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctg
AAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGT
GGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGA
TTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATG
GAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGT
CTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCT
TCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAA
CGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACA
GTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCC
CCAGGTAAATGATTTAGACATCAGACTTCCTTTTAAGTCAAACTTTGCTA
CActtatactctcgggtaccaattagccggggggtttggcataagcgggg
ggttggaaaaaatctcaaaNNNNNNNNNNNNNGGGGggagggttggaata
aaaatgtcaggggtgaaaaatttcgcaaaaGTTAATTAGCGGGGCCCCcg
actattaggtacccgagagtaagtaaAGATCTTGATATTCAAATCTGAAA
AGGTTCTTTAGAACGTGGTAGATTGTAATTCATAATCATCTAACTTCTTG
TTACAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAA
ACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAG
ATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTC
CGATATGAAGAGTAAGCACATATTTGATGAAGTTTTTGCTGTATTGGGAT
CTTGCAGGAAAATATACATCACCTCCTATATTGCAGTGGATAAGTGATTA
TTGACCTCCTTAAAAAACAGCAAGTTCAGGCATCAGTTGAACCAATAGAC
TATTCCATTGATAATGAGCTGttaacactgacctttatatatccctggaa
caagttactcaatgccggccaagcaaaatattatgatcggaTTGAGCGCT
AGATTTAATTTCGCTTGTACactaatgatgtagcgccgtttgtcgttagg
caaagtttcaaacactacaatggcttctttgcgggcaccaactttcaaaa
aacttagtACTGGGTTTGTATAAATCTCAGTGGGTTTTAAACATCTTGAA
TTCAAAGTTTTTGGTTACCTTACTTACTTCTTTACCAATGGAACGACAGA
AGCTTTTCTTAAAGTTCCCAAACTCTTAACACCTTTATCTGTAATTTGCC
ACTTTTTTTCAGTTACTTGAGTTATGATGCACTGCAGAAACTATTGAACG
AAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTCATACCG
TTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTA
CATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACA
TTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTG
GGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGTGAgtaat
gaaaatttcgaataATGATGGCTTTCAAAGAATTAtactacacccctgtc
tcgcaccCAGTGAGGGTCTTTCGCAAAGTGGGAacgaaaatttctatcaa
aatcatAATGGGGGAAGAAATTCTATTGTCCCCATATTGCTCATAATAAT
ATTCGAtgaggatggttttggagtgcaatttttcaaagtcaagTCAAATT
TAAATCTGCCAGCGGGGCTGAAGTTGTAGGGTAATTTTTCCACTAGGTAC
GAAATTTTGGCAAAGCTTTTCAATAGGGCGGGGTCCCAGGGGTAAAAGAA
ATTGCTTTGATAGCATCTGTTACtcgagaaagaaaaagaagctcCGAATC
GATTTTATTTTGTATAGCTATGAAATACCATATGAAAAAGATTATTATAT
TACCAATATTACCAGTCAGAAACAACTTCAAATTAGCTCATCTTCTCGGG
AAATGTGTACACCGGGTAACTATTTGGTGGTACGCTTAGGCGACTTTCGT
TCTTAGACGTTAACAATGTTAATTAACAATCGAAACATATTTCATATCTA
GGGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATC
ANGACTTTCGTTATTAGATGTTAACAATGTTAATTAACAATCGAAACATA
TTTCATATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACC
ATCCATTGATCATACCAAATTACTTCGACCACCCTGAAGATTTAAGAGAA
TTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTATGAAACA
TTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGCAACATG
AGCTAGGTGaatttctttaaatttctttcaaaatttgtttataCGGTTTA
CCCTCTCTTGTTCGATCTGCAAGGGATCAAGAATAAGATTGTAAAGGTTA
TANagggctgtactgagaaatattgcccgaggtcaagtaacgaccgagct
tgcgaggttgttgcgttgaccgagggcaatattttcagtacagcccgaga
AAAAaacggtcattattgtatttgttaaccgtttccttcaactttgattg
atttttagcgctttatccaggaaaaatagcgaaataaagcagaaaaaaca
agcgaaaagagataaaaaattgctataatttctgacgtcagaaataaaaa
atgagagaaatgatgtcaacgcattgttcattttcctttgaaaaagtgac
gtcacaatgaattttcctaacgacgggcaactNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtgtactgagaaatattgcccgaggt
taagtaacgaccgagcttgcgaggttgttgcgttgaccgagggcaatatt
ttcagtacagcccgaaaaaaaccggtcatcattgtttttgttaaccgttt
ccttcagcttcgattgatttttagctctttatccaggaaaaatagcgaaa
taaagcgaaaaaaacaagcgaaaagagataNTATAGATATTACGACATTC
TACCTAAGAATGGCTTGAATAATTTAATGGTATAAATTTCCAGATCTTGA
AATATACATTTCCATAGCCAGGGGaatcaaaaatcttttcctCACTGATC
TCcaactacttgactggatcgggctACCCGTTTATATGAAGCGTGTCAAG
ATTTAAAGGTGActagtccgccatcttgttttcaattcttgTCGCCAACA
AtacgattcgaatgttttgagattccaacgttcgaaaatctaaggTTGAA
TTGGAAAACAATATGGTAGACTAGTCTACTTTAAAACTTGGCACACTTCC
GCGGGAAATTTGTTGGCAGCTATCATATCTAGTGCGTAAAAGAATACGAT
ATCTGATGCCACCGCAAAACAATCAGAATTGAATGTATTTCTTTTCTTAG
ATTCGGATGACTACCTCCGATGCATAGTTCGAAGAGGAGCGACCACCGTT
TACCACCCAGTGGGTACGTGCAAAATGGGACCCCATACTGATGATCAAGC
AGTTGTAGATTCAACATTGAAGGTTTATGGTATCAAAGGATTACGTGTTG
TCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCT
ACTATCATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAA
AGACAAAAAATCTTATTTGGAGTAAAAATAATCAATGGAATGAGAAACGG
AAATACGACTCCAACTTGCTTCAGTAAATATGCCAGCTTTAGGTATTCAA
GgtgtttctttaaaaagaattcattAGTAccaaggcgaaaataaaaaaat
gttatgtTTCTNGAattgatgtcaacgcattgttcattttcctttgaaaa
agtgacgtcacaataaattttcctaacgacgggcaactctggccAGTGTA
GGCccgcgaaaagaaccaattgcattgcgcaaaaagccgtgtagcccgct
ttgaaaaagtaaccggttaacaatgcgTTTTTCTTCATAGAAGATAATTT
CTAATAATAATAAGATCGTTTTGGGTATNgatttttctgacccggccgca
gactatggtttcatctatatggttcatcataaagaaaatcaagttgaccg
ttcaagctaaAAAACGTCGTTCGGCTAGATATTCCCTCTTGTAAATCAGT
aattcgttagtagttgatacattagtattcagggtttacttcatactgtt
tgtacataaaagttatcttcaaagttctatttcaatgatccgGCTGNctt
aacttttttcgtttttatcagtttgagttatttatatatcaatacttttc
tttttctaaaatgacagatattacatatcttcacta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004530-exon-sc0000045-1491911889:757994..759047 | TCONS_00004530-exon-sc0000045-1491911889:757994..759047 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1510915933:757994..759047 | TCONS_00004530-exon-sc0000045-1510915933:757994..759047 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1575043694:757994..759047 | TCONS_00004530-exon-sc0000045-1575043694:757994..759047 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1491911889:759350..759504 | TCONS_00004530-exon-sc0000045-1491911889:759350..759504 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1510915933:759350..759504 | TCONS_00004530-exon-sc0000045-1510915933:759350..759504 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1575043694:759350..759504 | TCONS_00004530-exon-sc0000045-1575043694:759350..759504 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1491911889:760006..760284 | TCONS_00004530-exon-sc0000045-1491911889:760006..760284 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1510915933:760006..760284 | TCONS_00004530-exon-sc0000045-1510915933:760006..760284 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1575043694:760006..760284 | TCONS_00004530-exon-sc0000045-1575043694:760006..760284 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1491911889:760845..761149 | TCONS_00004530-exon-sc0000045-1491911889:760845..761149 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1510915933:760845..761149 | TCONS_00004530-exon-sc0000045-1510915933:760845..761149 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1575043694:760845..761149 | TCONS_00004530-exon-sc0000045-1575043694:760845..761149 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1491911889:762444..763379 | TCONS_00004530-exon-sc0000045-1491911889:762444..763379 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1510915933:762444..763379 | TCONS_00004530-exon-sc0000045-1510915933:762444..763379 | Clytia hemisphaerica | exon |
| TCONS_00004530-exon-sc0000045-1575043694:762444..763379 | TCONS_00004530-exon-sc0000045-1575043694:762444..763379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:757994..763379 + |
Blast
BLAST of TCONS_00004530 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 273.478 bits (698), Expect = 5.949e-80 Identity = 221/625 (35.36%), Postives = 311/625 (49.76%), Query Frame = 2
Query: 236 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAGGGETIHTEVAGFQYTA--IRLGAS-----------WDYMTEKHEDGITSTNQKNGQV-YWPRGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQRTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKI-LSYNPDYNGEKQTGCFFHQLTRRDGLRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVN-YIDY-----LFFNDSVSFRYEDYLSYDALQKLLNERKGYLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADEYWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIXTFVIRC*QC*LTIETYFISRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLRCIVRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADIIK 2032
A+ + DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG + + AG + + I + A+ W Y TE + G+ +G+V YWPRG++ GGSSS+NA++Y RG+ DY+ W+ QG GW Y L YF+K++ L S++ GPL V + + P+ + A + D NG +Q G + +T +G R S A AYL P R+NL + V ++L E A GV Y KNG+S A KEVILS GA+ SPQ+LMLSG+G ++L+K GIP++ L VG NLQDH+ YI + + + + + + L K E T L G FI + P+IQ H+ L + D + Y ++ +R S G +KLRS N +DHP+I PNY D+ +F +K T+++ A + +RGKE PG + SD + VR A + YHP TCKMG +D AVVD +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct: 30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVL----AGSKRLSWKIHMPAALVANLCDDRYNWCYHTEV-QRGL------DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGA---TAHLETGGFI---RSQPGVPHPDIQFHF---LPSQVIDHGRVPTQQEAYQVHVGP--------------MRGTSVGWLKLRSANPQDHPVIQ-------------------------------------PNYLSTETDIEDFRLCVKLTREIFA---QEALAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
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