XLOC_000967 (gene) - C. hemisphaerica

Overview
NameXLOC_000967
Unique NameXLOC_000967
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000012:722587..729559+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000967 ID=XLOC_000967|Name=XLOC_000967|organism=Clytia hemisphaerica|type=gene|length=6973bp|location=Sequence derived from alignment at sc0000012:722587..729559+ (Clytia hemisphaerica)
TTTCAGCATTAAATTAAAAGTACTAACAACTATTTCAACACAATATTAAC GACAATGAAACTGGTCGATATCAcaaaagcttttcaaaatgcAAGAAAGT ATACCAAAGATATCAATGAAACAGATTGTCTGAATGCTATCCAGAAACTG AAGCTGTGAGTTTCTAATCTCTATCTATATCTTTATAACCATTGAGACTT ACATTTTACAGTTCAGTAGAAGACCTAACAGACTTTGCCTGACTGACATA AATTTCacccaaaaaacaaaaacaaacaagaaaACATGTGCAGGTCCTTA TGGGAAATATTTTACCTTAAAGCAAGGTTTAACTAAATCACACTGTGCAT ATTCTTACTGCTGTTTCTCATCTTTACGTTTGATATAAACCTCTATATTC TTTCGTTCCAGAGGTCTTTGTTACAAGTTAGAAATTGGTTATCCTTTTGT TTTTCTCAGATCAAACTACAAGGATATTCCCAGTATCCCACTCAACAAGG TGAAAGAATTGTTTGTGCAGCTTCTTGGAGATGGTTTTCATTTGGATGAT ACGAAATTTAAAGAAGTTCAAGATTTTCTTTCCAATTGCACAGTAAGATT TATCATTTGTTATCTTAGTTGTCCCTTTTATAGCAGTTTGAACTACCTAC CTACAGTGCGTCTAAAAAAATGATTTACCGAGTGTCTCAGAAAAAAGTCT CCCACTTTCGGTATAATATACCCtcgttttttgcattttttaactATTTT GATATCAAATCTCTAGAAATTACACGGTTTTAAGGTACAATCTTTGATCT TTCTTTGTTATAAAAGTAGCATTTGATTGACTGCTTCTACCATACAAATG GTAGATCCCAAACCtacgaaaaaaataaactatGTACTCAACTAATAAAC TCTTGTATGGTTTGCATTGAAAGacttgtctttgttttttagttgAAGAA AATGGTCGACGAGCGACTATTAGCTAAGGTGCTGAGATATCTTCTTCGAA AGGTAATTGtctttttagaatattttagaaaatcgTTGTGCGCACTTTCT TCGTGAAGTTTCTAAAGATTCAAATCGCTTCACACTTCTTCCCTATTCTG ATGCAAGGCTAGATGCATTATATTATTAAAGTAACTTGAAAAATGACTCT TTATTGAAACTCCTTGCTTCAACCCATTTTGTTATATATAAAACTAGACA GGAACACGTCGGCGTTTTAAATCTGATGTATACTCATTTCACCATCATTA TAtgaagaagaaatcatagcatagATCCAGGCTAATACAAGACATAAACA ACATCCGCCTTAGTGTCCATAGCAtccattttgatgacgttttgTGTTTC TAACTGAATATTGTGATGACGAAAGAGCCTGGTGCACAACggtccaaatt tttcaaaagttctcTGCTATCTTATAAAGGAAGATATTTACGCGGGAAGN TTTTTCAAAAGTTCTCTGCTATCTTATAAAGGAAGATATTTacgcgggaa gaaattttctcggaatttaatttcgccgTTCACAGCACAAAATTCGGAAG TTTCGCGGttgagagacttttttgtttataataatatggcctattttgcc ttaaaaagaccaattttagaggtGAATTGTCAATTCCTTAGAACATTCTT GTTACTCTATATGTAAATATATTTTCAGCATGAGGCTACCGTGTCGAATA TCGAATCATCCGCCACTACATTTAGCCCAAAACCGTTATTTCCTTTGACG AGACGTGTATTTGTCAGTTTGAATCAAATCATTCTCCACTAAAACCACAC TAACTAGCAAACTTTGTTTCAGAACTTATTACTGTTATTCCAATGGCGGT TTGTCGgctgcccacgctaaagctctaaaggagcgggccgaTTTCCCATC GGAAAGATAAGTCGACCTTcgatgtgccgcatccccagtcgggtttAGCT ACCCTTGGCCTAAACCTGAAAATATTTCGGCTGGACCCGCTAacccccga aaacgagggctgagTTACCGCTGCAGCatccttgacgcggtcttgcaaaa ttccatCATCTAAACCttaattttcccgaccttcagaacTTTAGCGTGTC AGTTGAAATTTCTACATCTAATGAGTGCCAGATAATTTCAGAACTGTACC GTTAACATATCTTTTTTTTAGGATAGTACCAAAAAGGTTGCACTTTTGAT AGTGGAtgtacagaacgattttatcaGTGGTTCACTAGCCTTGAAACATT CACCAGCCTGTGAGGATGGTGTTGATGTTGTACCCGTCATCAATCAAATG GttcaaatgaaatttcatttctttgtaTATACAATGGATTGGCATCCACA AGATCATATCTCGTTTATCACCAATGTTTCAAGGTacttcgttttttttt gtttatagttTAATACACAATAGGCTGTTTTAACCCTTTAACAGCCGTGG CATTTTTTTACAccctcgacctatttgccaatgtcggcatatgccgacat gggcaaaaggtagcgattttcacttcattttctgaataatgTATGAAGTA TCAGTCAAGGACTAAAATTGTGAGTTGAACATTGTAGAATATAGTTATTT Tgcaacatagaaaagtttttaactattcatttttttcatttcaaaccatc taatacaaaatctttgtagaagtgttaaattttgcagcaaagaaatggaa atttcacatgtcggcatatgccgacaatggcaaggaaatcaaaaatgctc atgtcggcataggcacggaaagggttaagcaTGTTCATAtcttctacaat cagtgccgaaatatattggtAATTTTGGGAGgggttactctcgggtacct aatagccggggggattggaataagggggggggggggggNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNaaggaggctaatacagcagaatttaCCCGAGAGTAAGT GGTTTCAGGCTATGTTCTCAGCCACATTGGAATATTGGAATATTTTGAGC tattagatcctgagatcctaagatCGCTAAGTCTAATGtgaaaactcaga gttaaaattttactttctaACTTACTTCAAAGCACATAATAATCACTTGT GGCTTTGAAGTTTTGGGGggattccccttttgtgccaaatatttcggcgc cgattgtagaGGGATTTTTATTTGACTCATTCGAGTAAGAAATGTAAGAG AGACCTTCCAATATTCAGAGCTCCTTTCATCTTCTagtgatttaaaaaaa cgttATAATTATAATAGAAAGCTAGAGAGAAACTCCCAAAAATTGCTTAC AGTAATTATACAATCCCTTAAAAGGTATGATCTACATCCAACATCGAAGG TTCCGATTGCCAAAGATGCAAAGACTTTTGATTTGGTCACTTTTGCTGGT GATGGTGACCCTTTTGATCAAGTCTTATGGCCAGCACATTGCATACAAGG AACTGAAGGTGCTGAACTACATCCAGAATTAATAGTGAGTATTCTTCTTt tgaaatcgccgtttttctggattttcattggactttttccatataattgg ttgttttttcattcaaaaacattattaatagcaatgcccaccatcaagca tgtTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACAtctaaaaat cgccggaacaaccgattttcgccggaaaaatggtatttcttgaatttctt gagctgtactttatatattttcatgaaattttgcacactgatgcaaaatg tcaatacctaaattgtgagggagaccgattttcgaaaaacgttttttccg gccgaaaatgccggaaatatgccggaaaaaccggttttttgacattttgt cgaattttcatcttttgttttttagattttttgcagagagatgcgtattc gcaatgctcaaaaaatggccgagttcgattttcgagaaaaaaattttccg gttgaaaatgccggaaatcgccgtttttgcagattttcattggatttttt ccttatatttctatgtttttcacacaaaaacattattgataacaatgctc accatcaagcatgattcaattgtcaataaaagtgatttttgcgaccagaa cttcctatttatttttccctacaacccttccctctccccccatcaccAAT CAATGAGGAATTctttgtgttgtgtattttcgctaaacgctatattttct gactgatttttttcatttttcttttcgcattgctatctaactttcatcat caggtaggtccattcagcatgttacTTGTTTACGTTCTGAGTTTTAAGAA TATTAAATTCATCTATCTAATTTTATCTGGAGGTTCCTACAGGAaagttg tctgtacacagaccgtgtatttacggctaatttcaaaattcattactATG AAGTGATAAACGTGTGATGCATTCTGGTACAGAACAGGGAAGGGGTCCGT GTAACAGTTTTTGGAGGAGATGAAATTAAGGTgtactgaaataaaaaaaa tctgagGGATTCCAAAAAGTGAAGATAAAACCTAAGAGGTCCCCAGAAAA GtcgaagaattttttttcgtaaAGGACCTCTCNTAAGTTACCCTCCCATG GATGTTATTGGGACCCCCGCccactttttaaaaatactttGCGTTGTTAA AAGAAAGGTCCCTTATTTTTGCTCTGAGTAGGACGATAACTTAGACTGAC TCCTATTTTGCCCTTGTATTTTGTATCCTCTATTTTCTCCAATAATATGA TCAGAATCGAGATGAAATTGATTACTTGCTGGCTCTTTACTTAATATTGA AATGAATCATTTGGTTTTCttcaatttcgaatgttttgattttgtcttTG TATGCCATTTTTGTCAATCAGaggtgacgtaatgttttcaacCATCGGAT TGTTCTATTGGTTCTTTTCGATTTCAATTAGgtttctgattggtcaaaaa aCACTAGAAATCACTGAAGCGTAAAATCTGAGCAAATAATTCGAATCATG ACATTTGCGTCACGAGTTCCGGAAAAGCGATCGTTTTGTTTGGATATGTG TAGACAAGAGTGGGggtatttttttgagttttaaaagattttttttcttt tctggtGTGGTGTACATTCAATCAAGCTCTCGAGGTAACAGGTTTGGACT TTCGATTTTGCTGTTGTTGAGCTATGATAGCGGATCTGAAATCTTCGAGT ATTATAATTGTCTGACAATTCAGGACTTTTTTCACTGTTCTTaagttttt tcaagttttgaatgAGTTTCTTTCGTAGTATGAAATCTCTGTCTGTCTGT CCGTACAGTTTAGATACTAAtaaatgatttttgttttgctagTAGGTGTA AGAGGGTTTTTGTTAAACAGCCCTTTAACCCAAGATTTCCGGCCATACTC TCACGACCTAGTCCTACCGAGTAATATTTTCATCAGTATTATTTAGGCAC CAAAttggggaaagtgacgaaattttcctccCAATCAATTTCATTGAACT ATGACAAAATTGTCTGATGATGTATACTGTGATGTATGTGCTTATTATAA GCTTTTTATGAAACATCTTATTTCACCTTTTGCTCTGAATATTTACGact caaatgaaatttttcacactacTGTAACCTTTTTGTTGTATTGTGACATA TTAAAAGAGTGTCCAGATTTTCTATCCTGgcaacatttttattccaattc TCAGGAAATCAAAGCTGATAATTCAATGCGTCTACTCAAAGGAACCGATC CAAAAGTGGATAGCTATAGTGCGTTCTGGGATAACAATCATACACACCAA ACGAAGCTTTTCTCAGAACTGGTCGATCGTGATATTACAGATATCGTTGT TTGTGGATTAGCAACCGATATCTGTGTCAAGTTCACTGCAATTGATGGTC AGAAACATGGCTTCAACACTACAGTTGTTCTGGATGCGTGTCGTGGTGTT GCTCATGAAGGCATTGAAACTGCCAGGTGTGAGCAACAAGCTTGCGGTAT CAAAATTATTGTTAGCTCTGAGGTTTCATCCTTGTTGGCCTAAGCTATTG ACATCGCTAAGAGAAGACTGAATAAAGTTTACTGGCTAGAATCACACTCA GTAGTGTATGAAGCATTTTTAATATTGGGAGGGGGTGACACCGTGGGTGC CGACCATGCTTTGATCTGAGGGGGGATTGGGAAATTTGCAAAATAGGCCT CTATATTTTCTCTAATGTTTTAGATAGTCGTCTTTAAGAAACCATctctg aaaaaattattgggaaaagccccccccctgcACCCCCGGCGGTTACTACG GCATTGTACTCAATATGAAGGGAAGGGGCAGTTTTTTGGGAATATGTACG TCACTTGTAATTAATTTGTAATTCAATTAATTTATTgtctttttagactt tttttttattattttctattATGTTTTTAGGGTTTAAATCGAACACCcaa atagaacaaaaaattatttgccCTTCGGGATAGCAGATATTCCGCTCAAT AGCCGGAAAATTAACAGCtcggatggttttggagtgtttCTTCTGATTGA TTTTCAAATAGGAATTTCCCAGTTGgagctgaaattgtagggtatttctT CCACCGCGGATGACCTAAATTACTagcatagtgtgcaagggggctCCAGG TCCCGCCTaaccctaaaattcccaccctcaatccagactcccagatccca gctaaaaatgttATCCCCACGAAAAATTATACTAGTTCGAGGAAATAAac gaaaatttttacagtataataataaaaaggagaaaactttAGCTTAGTTt agtaaaagaattatttatagaacatagaatttagaaaaaattataattat attgaaaataagaaaaaacaaac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001804TCONS_00001804Clytia hemisphaericatranscript
TCONS_00001805TCONS_00001805Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001804-proteinTCONS_00001804-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:722587..729559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.26 23.85 25.49 23.91 6.86 5.78 6.52 6.69 7.63 6.4 7.2 6.42 3.26 3.43 4.32 7.23 6.07 7.15 2.72 3.71 6.15 5.77 13.95 12.79 7.3 5.5 8.11 7.63 9.07 8.14