TCONS_00001805 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001805
Unique Name	TCONS_00001805
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1728

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:722588..729559+

transcript sequence

>TCONS_00001805 ID=TCONS_00001805|Name=TCONS_00001805|organism=Clytia hemisphaerica|type=transcript|length=1728bp
TTCAGCATTAAATTAAAAGTACTAACAACTATTTCAACACAATATTAACG
ACAATGAAACTGGTCGATATCAcaaaagcttttcaaaatgcAAGAAAGTA
TACCAAAGATATCAATGAAACAGATTGTCTGAATGCTATCCAGAAACTGA
AGCTATCAAACTACAAGGATATTCCCAGTATCCCACTCAACAAGGTGAAA
GAATTGTTTGTGCAGCTTCTTGGAGATGGTTTTCATTTGGATGATACGAA
ATTTAAAGAAGTTCAAGATTTTCTTTCCAATTGCACAttgAAGAAAATGG
TCGACGAGCGACTATTAGCTAAGGTGCTGAGATATCTTCTTCGAAAGGAT
AGTACCAAAAAGGTTGCACTTTTGATAGTGGAtgtacagaacgattttat
caGTGGTTCACTAGCCTTGAAACATTCACCAGCCTGTGAGGATGGTGTTG
ATGTTGTACCCGTCATCAATCAAATGGttcaaatgaaatttcatttcttt
gtaTATACAATGGATTGGCATCCACAAGATCATATCTCGTTTATCACCAA
TGTTTCAAGGAAATCAAAGCTGATAATTCAATGCGTCTACTCAAAGGAAC
CGATCCAAAAGTGGATAGCTATAGTGCGTTCTGGGATAACAATCATACAC
ACCAAACGAAGCTTTTCTCAGAACTGGTCGATCGTGATATTACAGATATC
GTTGTTTGTGGATTAGCAACCGATATCTGTGTCAAGTTCACTGCAATTGA
TGGTCAGAAACATGGCTTCAACACTACAGTTGTTCTGGATGCGTGTCGTG
GTGTTGCTCATGAAGGCATTGAAACTGCCAGGTGTGAGCAACAAGCTTGC
GGTATCAAAATTATTGTTAGCTCTGAGGTTTCATCCTTGTTGGCCTAAGC
TATTGACATCGCTAAGAGAAGACTGAATAAAGTTTACTGGCTAGAATCAC
ACTCAGTAGTGTATGAAGCATTTTTAATATTGGGAGGGGGTGACACCGTG
GGTGCCGACCATGCTTTGATCTGAGGGGGGATTGGGAAATTTGCAAAATA
GGCCTCTATATTTTCTCTAATGTTTTAGATAGTCGTCTTTAAGAAACCAT
ctctgaaaaaattattgggaaaagccccccccctgcACCCCCGGCGGTTA
CTACGGCATTGTACTCAATATGAAGGGAAGGGGCAGTTTTTTGGGAATAT
GTACGTCACTTGTAATTAATTTGTAATTCAATTAATTTATTgtcttttta
gactttttttttattattttctattATGTTTTTAGGGTTTAAATCGAACA
CCcaaatagaacaaaaaattatttgccCTTCGGGATAGCAGATATTCCGC
TCAATAGCCGGAAAATTAACAGCtcggatggttttggagtgtttCTTCTG
ATTGATTTTCAAATAGGAATTTCCCAGTTGgagctgaaattgtagggtat
ttctTCCACCGCGGATGACCTAAATTACTagcatagtgtgcaagggggct
CCAGGTCCCGCCTaaccctaaaattcccaccctcaatccagactcccaga
tcccagctaaaaatgttATCCCCACGAAAAATTATACTAGTTCGAGGAAA
TAAacgaaaatttttacagtataataataaaaaggagaaaactttAGCTT
AGTTtagtaaaagaattatttatagaacatagaatttagaaaaaattata
attatattgaaaataagaaaaaacaaac

Run BLAST on NCBI

transcript from alignment at sc0000012:722588..729559+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001805 ID=TCONS_00001805|Name=TCONS_00001805|organism=Clytia hemisphaerica|type=transcript|length=6972bp|location=Sequence derived from alignment at sc0000012:722588..729559+ (Clytia hemisphaerica)
TTCAGCATTAAATTAAAAGTACTAACAACTATTTCAACACAATATTAACG
ACAATGAAACTGGTCGATATCAcaaaagcttttcaaaatgcAAGAAAGTA
TACCAAAGATATCAATGAAACAGATTGTCTGAATGCTATCCAGAAACTGA
AGCTGTGAGTTTCTAATCTCTATCTATATCTTTATAACCATTGAGACTTA
CATTTTACAGTTCAGTAGAAGACCTAACAGACTTTGCCTGACTGACATAA
ATTTCacccaaaaaacaaaaacaaacaagaaaACATGTGCAGGTCCTTAT
GGGAAATATTTTACCTTAAAGCAAGGTTTAACTAAATCACACTGTGCATA
TTCTTACTGCTGTTTCTCATCTTTACGTTTGATATAAACCTCTATATTCT
TTCGTTCCAGAGGTCTTTGTTACAAGTTAGAAATTGGTTATCCTTTTGTT
TTTCTCAGATCAAACTACAAGGATATTCCCAGTATCCCACTCAACAAGGT
GAAAGAATTGTTTGTGCAGCTTCTTGGAGATGGTTTTCATTTGGATGATA
CGAAATTTAAAGAAGTTCAAGATTTTCTTTCCAATTGCACAGTAAGATTT
ATCATTTGTTATCTTAGTTGTCCCTTTTATAGCAGTTTGAACTACCTACC
TACAGTGCGTCTAAAAAAATGATTTACCGAGTGTCTCAGAAAAAAGTCTC
CCACTTTCGGTATAATATACCCtcgttttttgcattttttaactATTTTG
ATATCAAATCTCTAGAAATTACACGGTTTTAAGGTACAATCTTTGATCTT
TCTTTGTTATAAAAGTAGCATTTGATTGACTGCTTCTACCATACAAATGG
TAGATCCCAAACCtacgaaaaaaataaactatGTACTCAACTAATAAACT
CTTGTATGGTTTGCATTGAAAGacttgtctttgttttttagttgAAGAAA
ATGGTCGACGAGCGACTATTAGCTAAGGTGCTGAGATATCTTCTTCGAAA
GGTAATTGtctttttagaatattttagaaaatcgTTGTGCGCACTTTCTT
CGTGAAGTTTCTAAAGATTCAAATCGCTTCACACTTCTTCCCTATTCTGA
TGCAAGGCTAGATGCATTATATTATTAAAGTAACTTGAAAAATGACTCTT
TATTGAAACTCCTTGCTTCAACCCATTTTGTTATATATAAAACTAGACAG
GAACACGTCGGCGTTTTAAATCTGATGTATACTCATTTCACCATCATTAT
AtgaagaagaaatcatagcatagATCCAGGCTAATACAAGACATAAACAA
CATCCGCCTTAGTGTCCATAGCAtccattttgatgacgttttgTGTTTCT
AACTGAATATTGTGATGACGAAAGAGCCTGGTGCACAACggtccaaattt
ttcaaaagttctcTGCTATCTTATAAAGGAAGATATTTACGCGGGAAGNT
TTTTCAAAAGTTCTCTGCTATCTTATAAAGGAAGATATTTacgcgggaag
aaattttctcggaatttaatttcgccgTTCACAGCACAAAATTCGGAAGT
TTCGCGGttgagagacttttttgtttataataatatggcctattttgcct
taaaaagaccaattttagaggtGAATTGTCAATTCCTTAGAACATTCTTG
TTACTCTATATGTAAATATATTTTCAGCATGAGGCTACCGTGTCGAATAT
CGAATCATCCGCCACTACATTTAGCCCAAAACCGTTATTTCCTTTGACGA
GACGTGTATTTGTCAGTTTGAATCAAATCATTCTCCACTAAAACCACACT
AACTAGCAAACTTTGTTTCAGAACTTATTACTGTTATTCCAATGGCGGTT
TGTCGgctgcccacgctaaagctctaaaggagcgggccgaTTTCCCATCG
GAAAGATAAGTCGACCTTcgatgtgccgcatccccagtcgggtttAGCTA
CCCTTGGCCTAAACCTGAAAATATTTCGGCTGGACCCGCTAacccccgaa
aacgagggctgagTTACCGCTGCAGCatccttgacgcggtcttgcaaaat
tccatCATCTAAACCttaattttcccgaccttcagaacTTTAGCGTGTCA
GTTGAAATTTCTACATCTAATGAGTGCCAGATAATTTCAGAACTGTACCG
TTAACATATCTTTTTTTTAGGATAGTACCAAAAAGGTTGCACTTTTGATA
GTGGAtgtacagaacgattttatcaGTGGTTCACTAGCCTTGAAACATTC
ACCAGCCTGTGAGGATGGTGTTGATGTTGTACCCGTCATCAATCAAATGG
ttcaaatgaaatttcatttctttgtaTATACAATGGATTGGCATCCACAA
GATCATATCTCGTTTATCACCAATGTTTCAAGGTacttcgtttttttttg
tttatagttTAATACACAATAGGCTGTTTTAACCCTTTAACAGCCGTGGC
ATTTTTTTACAccctcgacctatttgccaatgtcggcatatgccgacatg
ggcaaaaggtagcgattttcacttcattttctgaataatgTATGAAGTAT
CAGTCAAGGACTAAAATTGTGAGTTGAACATTGTAGAATATAGTTATTTT
gcaacatagaaaagtttttaactattcatttttttcatttcaaaccatct
aatacaaaatctttgtagaagtgttaaattttgcagcaaagaaatggaaa
tttcacatgtcggcatatgccgacaatggcaaggaaatcaaaaatgctca
tgtcggcataggcacggaaagggttaagcaTGTTCATAtcttctacaatc
agtgccgaaatatattggtAATTTTGGGAGgggttactctcgggtaccta
atagccggggggattggaataagggggggggggggggNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaaggaggctaatacagcagaatttaCCCGAGAGTAAGTG
GTTTCAGGCTATGTTCTCAGCCACATTGGAATATTGGAATATTTTGAGCt
attagatcctgagatcctaagatCGCTAAGTCTAATGtgaaaactcagag
ttaaaattttactttctaACTTACTTCAAAGCACATAATAATCACTTGTG
GCTTTGAAGTTTTGGGGggattccccttttgtgccaaatatttcggcgcc
gattgtagaGGGATTTTTATTTGACTCATTCGAGTAAGAAATGTAAGAGA
GACCTTCCAATATTCAGAGCTCCTTTCATCTTCTagtgatttaaaaaaac
gttATAATTATAATAGAAAGCTAGAGAGAAACTCCCAAAAATTGCTTACA
GTAATTATACAATCCCTTAAAAGGTATGATCTACATCCAACATCGAAGGT
TCCGATTGCCAAAGATGCAAAGACTTTTGATTTGGTCACTTTTGCTGGTG
ATGGTGACCCTTTTGATCAAGTCTTATGGCCAGCACATTGCATACAAGGA
ACTGAAGGTGCTGAACTACATCCAGAATTAATAGTGAGTATTCTTCTTtt
gaaatcgccgtttttctggattttcattggactttttccatataattggt
tgttttttcattcaaaaacattattaatagcaatgcccaccatcaagcat
gtTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACAtctaaaaatc
gccggaacaaccgattttcgccggaaaaatggtatttcttgaatttcttg
agctgtactttatatattttcatgaaattttgcacactgatgcaaaatgt
caatacctaaattgtgagggagaccgattttcgaaaaacgttttttccgg
ccgaaaatgccggaaatatgccggaaaaaccggttttttgacattttgtc
gaattttcatcttttgttttttagattttttgcagagagatgcgtattcg
caatgctcaaaaaatggccgagttcgattttcgagaaaaaaattttccgg
ttgaaaatgccggaaatcgccgtttttgcagattttcattggattttttc
cttatatttctatgtttttcacacaaaaacattattgataacaatgctca
ccatcaagcatgattcaattgtcaataaaagtgatttttgcgaccagaac
ttcctatttatttttccctacaacccttccctctccccccatcaccAATC
AATGAGGAATTctttgtgttgtgtattttcgctaaacgctatattttctg
actgatttttttcatttttcttttcgcattgctatctaactttcatcatc
aggtaggtccattcagcatgttacTTGTTTACGTTCTGAGTTTTAAGAAT
ATTAAATTCATCTATCTAATTTTATCTGGAGGTTCCTACAGGAaagttgt
ctgtacacagaccgtgtatttacggctaatttcaaaattcattactATGA
AGTGATAAACGTGTGATGCATTCTGGTACAGAACAGGGAAGGGGTCCGTG
TAACAGTTTTTGGAGGAGATGAAATTAAGGTgtactgaaataaaaaaaat
ctgagGGATTCCAAAAAGTGAAGATAAAACCTAAGAGGTCCCCAGAAAAG
tcgaagaattttttttcgtaaAGGACCTCTCNTAAGTTACCCTCCCATGG
ATGTTATTGGGACCCCCGCccactttttaaaaatactttGCGTTGTTAAA
AGAAAGGTCCCTTATTTTTGCTCTGAGTAGGACGATAACTTAGACTGACT
CCTATTTTGCCCTTGTATTTTGTATCCTCTATTTTCTCCAATAATATGAT
CAGAATCGAGATGAAATTGATTACTTGCTGGCTCTTTACTTAATATTGAA
ATGAATCATTTGGTTTTCttcaatttcgaatgttttgattttgtcttTGT
ATGCCATTTTTGTCAATCAGaggtgacgtaatgttttcaacCATCGGATT
GTTCTATTGGTTCTTTTCGATTTCAATTAGgtttctgattggtcaaaaaa
CACTAGAAATCACTGAAGCGTAAAATCTGAGCAAATAATTCGAATCATGA
CATTTGCGTCACGAGTTCCGGAAAAGCGATCGTTTTGTTTGGATATGTGT
AGACAAGAGTGGGggtatttttttgagttttaaaagattttttttctttt
ctggtGTGGTGTACATTCAATCAAGCTCTCGAGGTAACAGGTTTGGACTT
TCGATTTTGCTGTTGTTGAGCTATGATAGCGGATCTGAAATCTTCGAGTA
TTATAATTGTCTGACAATTCAGGACTTTTTTCACTGTTCTTaagtttttt
caagttttgaatgAGTTTCTTTCGTAGTATGAAATCTCTGTCTGTCTGTC
CGTACAGTTTAGATACTAAtaaatgatttttgttttgctagTAGGTGTAA
GAGGGTTTTTGTTAAACAGCCCTTTAACCCAAGATTTCCGGCCATACTCT
CACGACCTAGTCCTACCGAGTAATATTTTCATCAGTATTATTTAGGCACC
AAAttggggaaagtgacgaaattttcctccCAATCAATTTCATTGAACTA
TGACAAAATTGTCTGATGATGTATACTGTGATGTATGTGCTTATTATAAG
CTTTTTATGAAACATCTTATTTCACCTTTTGCTCTGAATATTTACGactc
aaatgaaatttttcacactacTGTAACCTTTTTGTTGTATTGTGACATAT
TAAAAGAGTGTCCAGATTTTCTATCCTGgcaacatttttattccaattcT
CAGGAAATCAAAGCTGATAATTCAATGCGTCTACTCAAAGGAACCGATCC
AAAAGTGGATAGCTATAGTGCGTTCTGGGATAACAATCATACACACCAAA
CGAAGCTTTTCTCAGAACTGGTCGATCGTGATATTACAGATATCGTTGTT
TGTGGATTAGCAACCGATATCTGTGTCAAGTTCACTGCAATTGATGGTCA
GAAACATGGCTTCAACACTACAGTTGTTCTGGATGCGTGTCGTGGTGTTG
CTCATGAAGGCATTGAAACTGCCAGGTGTGAGCAACAAGCTTGCGGTATC
AAAATTATTGTTAGCTCTGAGGTTTCATCCTTGTTGGCCTAAGCTATTGA
CATCGCTAAGAGAAGACTGAATAAAGTTTACTGGCTAGAATCACACTCAG
TAGTGTATGAAGCATTTTTAATATTGGGAGGGGGTGACACCGTGGGTGCC
GACCATGCTTTGATCTGAGGGGGGATTGGGAAATTTGCAAAATAGGCCTC
TATATTTTCTCTAATGTTTTAGATAGTCGTCTTTAAGAAACCATctctga
aaaaattattgggaaaagccccccccctgcACCCCCGGCGGTTACTACGG
CATTGTACTCAATATGAAGGGAAGGGGCAGTTTTTTGGGAATATGTACGT
CACTTGTAATTAATTTGTAATTCAATTAATTTATTgtctttttagacttt
ttttttattattttctattATGTTTTTAGGGTTTAAATCGAACACCcaaa
tagaacaaaaaattatttgccCTTCGGGATAGCAGATATTCCGCTCAATA
GCCGGAAAATTAACAGCtcggatggttttggagtgtttCTTCTGATTGAT
TTTCAAATAGGAATTTCCCAGTTGgagctgaaattgtagggtatttctTC
CACCGCGGATGACCTAAATTACTagcatagtgtgcaagggggctCCAGGT
CCCGCCTaaccctaaaattcccaccctcaatccagactcccagatcccag
ctaaaaatgttATCCCCACGAAAAATTATACTAGTTCGAGGAAATAAacg
aaaatttttacagtataataataaaaaggagaaaactttAGCTTAGTTta
gtaaaagaattatttatagaacatagaatttagaaaaaattataattata
ttgaaaataagaaaaaacaaac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000967	XLOC_000967	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:722588..729559 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.17217	0.605519	1.46167	0.3268	0.324128	1.28519	0.555605	0.949023	0	0	0	0	0	0	0	0	0	0	4.29848	1.66476	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001805 vs. Swiss-Prot (Human)

BLAST of TCONS_00001805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00001805 (transcript) - C. hemisphaerica