XLOC_000741 (gene) - C. hemisphaerica

Overview
NameXLOC_000741
Unique NameXLOC_000741
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000010:1052094..1061179+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000741 ID=XLOC_000741|Name=XLOC_000741|organism=Clytia hemisphaerica|type=gene|length=9086bp|location=Sequence derived from alignment at sc0000010:1052094..1061179+ (Clytia hemisphaerica)
TGAGAAAATAGATTTATTTTGTGTGGCTAGCTGCTCAAGTTCCTCAAGTC
ACTGAAGTCAAGCAACGAGGATTTTTGATATCCTTTAATTATGAAGTGTA
CTTAGTTTAAAAAATGGAGTTTTTTAATTACCAATCTGTTTATATGGTTT
TCTTGGTTTCTTTTTGGCAAGCTCATTTAACATTACAACTTGATTTTGAA
TGTACTTACAATGGGACAACACTTGCTGACAACGTCAAAATCTTTCTCGA
CTTAGAGGAAAATGGAACATCAAATCTAGTGTGTATGAAAATGCAAAACC
AAGGCTTCGTTGAAGAGCTTAAAATGAGTGTTTCCAGCAGTGACACTGAT
TTGGTGACTCTAATCTTTAATTCCACATGGACTTCAGAAAAAGTCCTAAA
CATTTCTGACCATGATATATTTAAAACTAATAACCCACCGAGTTTCAACA
TGAAGATTTTGGTTTGTGAAATATATTACGTCGATGCTTTACATGAAAAT
GTTaccataataaaatttttggctGTTACAGCACATAGATCATTCAGTCA
ATATCAGAGGACTTTTGGTTTGGATGATTCAAAGCATGTTGTAGCTGAAA
GTCCATGTTCTAGCATTGTTTCTTACTGGATACCAAAGATGTTATCGGAA
ACGAAAAACTGTAAGAATTGTTTcgtgtcccggggggggggtactaggtt
ggTGAGTTTGTGAGGTGATGGGTATGTcagagccaaaaatcgaaaattga
agctttgagaGGAACCCGTTTTGGGACCcttaaaaaaatctcaaaaattt
tatcgattttcactcgatttttgtcaaaattttgaaaattcacgACCGTT
AGAGaggaaatttcagaatttttgaatttcgtgatttttggacCCTTGCA
GAGAAtcgattttctttttaatggtgCTTGTACCTCTTTGAGTTTGAGAG
ACTTTCAAGGgtgtagtagggggaaatttgttcgttttttttttaaggtc
gctcgatttttttagtcaaaacacttgttatacatttttggaaagctaag
gggtaggggaatcaaaataactttggtgccaatttttttttcggacaaat
atgacggtctaaGGCAAAAATTaaagggtgaaaaattaacgaaaatttta
gcttgTGAAAATGGAgatctgttgtatatttttggaaagctctcaaaaaa
ttaagattagagatatattgcaagtataggtgatttctgtacctaactcg
ataCATTAACcctgtttttcagccagaaacagctgttttgttcagttttt
gcgctttcggaagctcaatatctcaagttaggtactgaaatcaccaatat
atcactaatcttaatttttcagagctttccaaaaatatacaacagacgtc
tctattttctcaagctaaaattttcattatttactGACTGATAATCTTTG
CCTGAGACTGTCATATTTGTcgaaaaatcacaccaaagtgtccgaaaaac
aattggcacccaagttattttgattcccctattagctttccaaaaatgta
taacaagtgctttgactaaaagaATCGAGCGATTGCACAAATTTCCTCCT
ACTAGTGTGAAAAAGGGGCCCTTATGGCTCGTACATACCCGgaacccatt
ttgcctaagtgccccccccctcccccgagGGCTTTGTACCCGAGGGCTAA
AAGTCAtgtaaagaaaattatttcagTTTCATCCAAGATTTTAACCCAAt
cgtttttctcaaattttagagcattaaaatgttctttatctCTCCTCTCG
CACATTCTAGAATTCTTACATGCCCTTTCGATTCTGACCTTGTTAAAGAT
TAAAAATAGTTGGCACACACATTTGTCGATTCCTTTTTCAGCACTTCACT
TGAAGATCAGCAAAGAAACACTTCTAATGATACCCATTCTTATGAGTGAA
AGCCAAAAGATTTCAGAGAATTCAACGGTAACCCGTTTCGTTGTTATGAA
TAATCACATCATTCTGGTAGTTGATAACCAGTGGCTATGGAAAGGAACAT
TAGAACTATCTGGGGTGAggaactttttcaaaagttataacCTGATGAGA
ACTTAGACTTATACCTTTTACAAATGCTTTCAGAAATCACTTGTGGCATT
CTTCTTTAAGAAAAAACGTTGCGTTACTTCTTTGGTTTTCTGGTTAGAAC
TCATTCTGACTCATTTTCAAAGCCTTACCTCTCATCAGAGACTTGATCTG
ATGGCTTAATGTCTTATCAGAAAACACCCCTAACCGCTTCGCCCATATAG
TGACCCGACTCCATATAATGATCTACTTTCTAGCCAATGAGAGTGATGTC
TTAAGAGAACAAAATACTGTTGGGTCTTCAAAATGTCCGTTATTTTCAgc
atggtttcagccccccagaaatctgaagggcacctatGCCAGGTTAGTAG
TAGGGGGCTAATgttttgcaattctttggggttacctattcattaagggt
acctagctgtcttgatatgatggaggctctgggggctggttatattttcc
aaatcaaatatttcaaaatatttaaaattattgaatttttttaccccagc
acctagtttcccatccaatttttctttcgtttcccatCACACCATccttt
gctatatttttctaatgtgattgttttgatttacggccgccatctttata
gcataacaacaaagctTACCAGCAGGTATTCATGCGTGAGCGCTTCCCAT
GCTGAataggggtacctaactcaaagcaatttctcaaggggacctaacTC
TTAGGGGGCACCATGCTTCAATGGGGCatctgaaaagtgggctgaaacca
tgtttTAATGAGCCCTCTAGCGCTTTTCGTGTGATTGGGGTTTTTTCAAA
CTCGTGATTTTACGATTGAAGATTTTAAAGTGCGTGATTGTGTGATCGGA
GGAACCGACGTGATGATCAACATGATCgtgatagaaagaaaatttaactc
gtgataACGTGACTGGGGGTCTCTTCAATTGGTAGGAAGTAAAGTTCTAa
agtaaaattcaaaatccaGTGGTTACCCACAAAATTATAGTGTATTTCGT
ATCTGGAATAAATACTCTGTTTACGTTTCTAAGGGTTATTGAAATTCATG
GTTTCTTGCTAACCGGGACACATTTCTTCGGTAGGTATGGCTTCCGTCTA
GGTCAGGGATGTAAACCTAATTGCTGAAATCTCTATAATTCTAGGATGTG
AGAATTACCAAAGCATCATCAAATCGAGTCCAAGTTCATTTGCTAACAAC
AACGATTCACTGTCCAATCACTGATACCCCTGGAGTCGAAGGCTCTGAAA
CAGCGCTCTTGGTACATCAAATTGGAAATGGCACCTTCCTCAACATTTAC
GCGCCGCCCATTGAATCAACGCCCCTTTACATTGTGACTTTGACAAATAT
CACTGGTGAAGATATCATAGATGTGAAATATGATTATGGTAAAAGACAAG
TTGTCGTACTATTGGTGAGTACTgtaaattttgtcaaatttgacaatttt
aaAAATTCGTCAAATTAGCTTAATCGCCAAATTTAAAGGTGCGACCTCAC
CAAAATATATCGATGTTGCTCTCtgcaataaaaaagaaaactccagttta
ttgccaccgcaggaagcctaaagcttccgaggatggcattcatagcttca
cgcataaggaagttgggcaaacatctcataattttgcgcgcgttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNggtaacattcttagcttgactgtatttctattgttt
tatcatcattaaaaacacttttccggattttttttgatctgattacccat
tttcaaagctctatgtctttttttattacctcagggagtcgaattaaggg
aaattcctttttttgttggaaaattccctatttaaaccacaagtagttat
taaccgctTTGAGCAAtgcaaattagaaatttttatcctttcaaaaactt
gtcgtttgactattacagtaaaatggcagtttagtacagtagcgtttagt
atgCTATAAACAAACCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTATCTATGAGCTGGACACaaattgctaatatttgta
gactagattttgcttcagatgagatgccattctaacagaagtaacggcta
taagtaacatttctttccgaattcaacaatttatttgatcgtttttctgc
ggtggcactttaatgaaaattatggctagtaaaatcttctattttgaaat
ttcaaagaatCCTGTATTCGGTTCTGAGAAGAACTTCCAGTTTAAAAATC
GAATTCAAAAACCTCtcatataaaacttactaatcaaattcaaaaaccTC
TCATATACAACTTACTAATCGagctaatcaagtttctaaaacttaAGAAC
ACAAAGACGAGGGTAACTCTCAGACAGGAATTCTATACACTTTGTGCATT
TTCTATATTacaacatatcagaggggatgcgtgcagtcTACAGTCAAAGC
AACGAGCAGAAACGTGAAATTAAAATTTAGACTCCGTTCTCTTTTTAGAT
TTCATTACTTTCGGCAATCGAATTGATATTtctcgattgtgttcgattac
gttcatCAACAAAGTGTCAATCAACTTCTATTTAATTTGTTCATTATTAT
TCCTTTTAGGTTACAAATACAGTACACGCATTCTCGTTATCTGGAACACT
GCAATGTGCGCCGATAATTTTGAAGGATACACATATTAAAAACCAATCAA
GACTTCTCGTAAAGTGCAACCTTCTGTTGATCGTCACAAATGTTAGTACA
TTTCTGCCCAgttctgacaaaaggaagtaactgacatttttatgaatttt
cattttttagcaaaaatggATTCTTTGGgtcaaaacttaatttttttagc
ttggaaaaaagttttttgtgttGTCaatctggaaaaaaaatttgaatata
gtAAAGAAGCAACTGACAGGTTTCTGGAGAAtattttctgacaaaaagaa
gtTAATGACTGTTTTGCTTCTTTCTGTCAGAAAAAGTCATCACTTTTGTC
AGAAATGTTCTTTCAGGAAACTGGTCAGCTACCTCTTTACTGACAAAGCA
ACTGTCTTGTTTTTCTCTGCAACAATGAAAATTTGGAGAAAAGCAGTGAT
GCTCAAAACTTATCTTCGATGAGTAGAACAATAATCAGTCATTTGTTTTT
TGATATGTACAGTACTTTCTGCATCCGATGCCAGCATAAAGCGCGCTTGG
TCAATTTTCTCAACTTCAACTTCATGTcagttacttccttttgtcagaaa
tGGGCAGATTTCTAATCTTcatgatattttttaattatatatATGCAGCA
ATCAGAGTTTAATTAAGATGTGGTGGGGTCAGATAGAATCTAACTTGAAC
TTCAAAAGAGCCAAGTCAATACTCAAGAGattattactttttttaaacac
cCGACCCCCGTATCAGCCATAACTCGATAGAATCACACTCTCCATAGATA
TTCTATCATGCagaatttttaacaaagaaaaatctATAATAACTTTTTAC
ATACAAATACTCCACATTTAGGAAATAGTTGTTTGGACATCAACAAATGG
TGGATGCAATTGGAAACGACCTATACAATGGAACAACATCCTCCATGCAG
ACTTTGAGTTCCATTCTGCCGATACATTGAAATTTACATCTAACATAACA
TCAAGTTACGGAACTCCGCTAGAAAGCTATCGGGATTATGATATTTTATG
GACCAAAATTGGTTTCTTACGTCCACAAGCAGCATTGAATAACTCTAATT
ACATGTTGCTCCTCAATGACAAGATTCCGGAAAGCAATAACCCTTATCTT
GATTTAGACATTTTTGCCGTAACAGAAACCGCAGAAGGATTCCAGTTAGA
GTTTACGCCAAATGAGACGAAGTTTCCTGAAATTTGGATTGGTTCCTTGG
TAAAGCTTGGTGACTACTCATGTCGCGTCACGGCTGTTTTCAACGCTACT
GTCGAGATTTATTGCTACAATAGTAGTTTAACATTCACAAACATTATCGA
CTTTATCCAGCAACGACGCTGGTTTAGTGTCGATTTCTTTTATGCAAGAA
AAGTAGAATGTCACCTTAGTTTTAATGTGAATACCACAACCattgttttt
caaaagaaaccagACACGGAAATTGATCACGTGTTTTTTTCAACGCCCCC
TCTTCATGCTGGGACAAAGGAAACAAACAGTAGCGTTGCTTGGACTTTCA
AAGATCCGCTAACTTCAATACCAAGTTCGTCAAACCAAGTTTGTCTTTAC
CAGAAATATAAAACCTTCCAAGAATATATTTATCAGAATCCAACTGATTG
TCCAATAACGTTCACAGTAACTGGAATCAACGAATCTTACATACATCTAG
ATATTGATGAACATTTGGAAATCTCCGTCAATCTGACCATTGATATGATT
GTACCGTTACATGAAGATATAAGCGATCTTGATTGGCTCAAAACACAAGT
TTCAAATCATGAAATTGTATGCTTAAGAACACATCGTGAAAAATCGAGGA
GAGCTGAGAAAATCCGTCTTCAATTCCATCAATCTTTGGCAATATCAGGC
ATCAATGTTGTCACTATCAAATCAACTATTTATAATTCGAAATGTGGTGG
ACAAAGTCTAAAATTTCAGATTCTCAATGTTTGTCCTCCAGACAAGAAAG
TGATCTTCGAATATCCAAAATCCGTTCAACCAAACGATTTTGCTGACGAT
GATCAAAAACAAGACTCAGAAGGGATTATTCGGGTCTTTCATTTACCAAC
CAACTATCAACCACCTTCTTCTAAAGGTATTGGTATACCACAAACGCCGC
ATGTATATAATGCAGACCCGGCCAAACCAATGTTTCATAAGAAATATCTG
GCAAATCAAATCGATCCAGTcttcaaaaaatgtaaagatAAACGAAACAG
GTGATTCATATTCTCTATTTTgtattgtacacgttttttttttataagaa
cgtcaaaaaatttcgaagccttcggatgttcttagttttttggatttgaa
gcctaaaaatgttcttaaaatgttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCAAAGCCTtggtat
gttcttagaatgttcttaaatttttgggcctcgaagccttatgttcttat
atagtttgttcttataaaaaaaacgtgtactgtatTCAGTTGTGAAGGTG
GGTGTTGCTTGTGATCTTGTCTATAACacgttttctataagaacaaacta
tgttagaacataaggctttgcaGACAAAACATCtcatttcttaggaaaat
aaacaaaaatgctCAGAAagtggtaaaaataagaacatgttaagaacatt
tttatgcttaaaactaaagaaattaagaacatccgaaggattcaaaaatt
ttggatgttcttataaaaaatatgtacttgaagttatatatcaaatttaa
aatttggttAAAATGCATTTGTTTGTAATCAAATGGATAACTGCGCTCGT
AGTAGTAGAGCCGTCCCTCGATCGAAGACTGACTGTGAAGATTGTAATCT
TCCCTGGATCAAAAGATGTTTGCGTGAAAGTTCAGCCTACACTACTCACT
TTtgatgatttatttatttttcaggaCGATGTGTGGGTGTACAAAAGCTA
TGGAAATTTCTACGAagattagccaatcagattgcatcAAGAAAGTATAT
CGTCTTCTGTATCCAGAAAAGTTCATCCCTCGattacttttgcaaaaaaa
agctaaaaacaaTACTGCTTTCGATAAGCTGATGCGTTTATCTGAACTCA
ATGCCAGAACTGATTATACCCTAACCAATTCAGTTCGAGTCTCAAACGGA
GCCGAAGCGGTTAGTATGAAATCAAATACCACCATTGAACTTAAAGGATC
GGGATTATATCATTTTCAAGTGGACGTATTTGATAAAAACGTGTCGTATT
GTAATTTTGAAACGGAATTTCTAGTCTATGTTGACGGGACACCGCTTCCA
AAAGCCGTTGAATCGCTTGTCGAGGCTTTTACCGCTTTtgtttttggttt
tattttgttgGGCTTGTTCTTGTACCAATattacaaaaagtaaaaaaata
ggaaaaatcaCGCAAAAATGTTTTACTTCAGAAAGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001399TCONS_00001399Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001399-proteinTCONS_00001399-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1052094..1061179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.01	0.01	0.01	0.04	0.02	0.01	0.02	0.04	0.02	0.05	0	0.01	0	0	0	0.04	0.16	0.2	0	0	0.14	0.24	0.01	0.04	13.21	12.96	0.03	0	0	0