XLOC_000007 (gene) - C. hemisphaerica

Overview
NameXLOC_000007
Unique NameXLOC_000007
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:314485..318198+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000007 ID=XLOC_000007|Name=XLOC_000007|organism=Clytia hemisphaerica|type=gene|length=3714bp|location=Sequence derived from alignment at sc0000001:314485..318198+ (Clytia hemisphaerica)
TTGGCAACTAAATCTCTGTATATGGTGGCGAGTAGAAGTTTTTCTTGGCA
TGTAAGGAAAATCATTCTTTTAGTGTGTGTATGAAGTGTAATTGATTTGA
CTCTACTGATTtgatttgacaaatttttttaaagaagtagCAAATTTGAC
AACACAAAATgagtaagtatttatttttttcgttaAGGTTCATCCCTGTC
GTTTCCAAACTCAGGTTAACAGGGCCTCCTTAACACAAATGGACTGCTCT
CAGATATAATGGTCTGTACAAATTAATAAAACGTCATCCAAATGATTTCA
TTGATTCCCATATAGCCATTTCCAAACAGACAAAATGTTGCTTTTCATTG
ATCACTTTTTTTCTTCGGAAAAAACGGTCTGTAAAATAACAATAAGCCAT
CAAATGGTCACAAaaacattttggatgttcttattaccTCACATTTGACA
CTGTTCTTTAGAATGCAGTGTTTTTTCAAGCTGTTTAGAAAAGTTTTTGg
ccttatgaaaaaatatttcgactAGCTTTGCTGCAAGCTCATGCTAATTT
TTATCGaactaaattttgttttaacttTTCGCCATTATCGAATAAGACGT
TCAAATCTGGAGAANNaaccactattttgaagatttcgagacgaagaagc
atttacaaaaattttccgcaaaaatttttattgttcggtaaaagatacac
catctactgcgaaaaatatttcaaaatgcNNNatgtataacatgccatag
ttttgttggttacatcagtcagaaaacacattttaaacacggcaattatg
aaaaattcactatggtcagagcccttaagtacgCAATTCGAACGTTTAGC
TTTCATACGTAATAATGGAAGTTACATAACGGACGTTaacttaaaaacat
caaaaatccCTATAGCTATATCTCTATGGAATGCCACCACATCTCAAATT
TTCATTCACCCTTGTAAACTTTGTTTGAATTGAAACGGGCCTTCTAAACA
AACGTAGGTTGAAATGTACAATCGAGGTTATCCATGAAAAGGCTTTTGTA
GAAatcttaatgttttttttttacattacagactttttgaaattagttGT
AACACTTTTGGCAACCATTGCGTTGATCAATGAAAGTGAAGCAATGCCAC
CGCCACCACCGCCGCCATCTAATCAACAACAATCTCAGCAACAACAAGAA
CAAACCCAACAACAGCAAGAACAAACTCAAGAACAGCAGCAACAAACACA
ACAACAATCATCAGATCAACAGTTAGTTCAACCAGCGCAAATCTCACAAG
TTACAAGCGAAGAAGCACCGGTAATAACACCAGTTAAATTTCTAGTGGCA
GGGGAttctatcgtctacacaagatcactaaaaaagggaaaagtTTAGAA
AGCAGGATAAATTTAAAAACGGTGGTAAGCCcggcggagtaagcagtggc
ggggGTGTTTACAGTGTTTGTTCCAAAGTCTACTGCCactttttttcccg
taaaccgccctgacacCTTGACTCTGCGCGTATAGTTTTCCCGAgtttac
tgaccctctaacGGACAATAGCATCGTCTAGGGAGGAGGTTAAAAATCAG
ATAAAATGATGATGTTCATAAACATATAACTCATTTACAATGAACATTCT
CAAATATGTGACTTCCCAAGCGAAtaaaagtacctgaaaatcggACCGGC
TTTGTTACGGCATTATGAGTGGTCTAGTAGAGGTCAAATTGTTGCTTCAG
ATCGGCCTTCATACCCTCTAGAAAATAGCGGTCCTGGTCTCTCGTTGGGC
CGGTCGTGACCGCTCCTTAGACCTGATCTGGCCGTTAGTTAGTGTTTGTT
GTTAGCTTACATCAATAAGTTATTATAAAAAGAAGTCTACTGATCGATAA
TGAGACCGGTCTGGACTTGAACGCGCTTCGATGTGGCCGCTAAATTCACA
GGAGTCGTAGCGGCCTTTTCGGAAAGTTTGTCAGTCATTTACTAACCCTA
TCAAAAGACCTGAAGAACGGCCCGATTTccaaaatacttaaaatcgcttg
aggAATCACATGTTATAAGTTAAAGTGAGCATAATAATTCAGTTCCTTTG
AAAACaaacacccttacagtgtactttgggAAACTTGGAAAAGGGACCTT
TgaagggccgcacgtatggtaggTCGCTTACCTTGAGTGGGATACCCCCG
GTGGTATCTCTAGTTTcttaacccagctggcacacaacgttgtttcaacg
ttcacctaacgttatatggacgacacaacgttgtgtgccagctaggaACA
TTAAACGCCAtgtctttatttttctatttgtaGGAATGCCCAATGGAGCA
ATTACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTGGTTGTA
AACCAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTATAGCTTC
TGCTCGAATAAAGTCGAAGGACGCCCGTTAGATTAGAAACAAGTTTGAAG
GAGGCTCAACGAAAGCTAACAACTGTCATATAACCCTAGATAAATTTGTT
GTTAAATGAGGATTTGAATGATTTTGTAGAGAATATAGCTTATATTTGAT
GTACTTGttactgtacacgttttttattagaacatccaccatctttgaag
acttcagatgttcttaacttttttagtactaagcccaaaaatgttcttaa
catgttcttaatttcaccactttatgagtatttttgtccattttcaaaag
aaaaaagtccccaaagccttaaaaggTTCTTAACTTGTGCTTAATATTTT
GAACATCGacgccttatgttcttatgaagTTTNAGTTAGTGTTTGTTGTT
AGCTTACATCAATAAGTTATTATAAAAAGAAGTCTACTGATCGATAATGA
GACCGGTCTGGACTTGAACGCGCTTGGATGTGGCCGCTAAATTCACAGGA
GTCGTAGCGGCCTTTTCGGAAAGTTTGTCAGTCATTTACTAACCCTATCA
AAAGACCTGAATAACGGCCCGATTTccaaaatacttaaaatcgcttgagg
AATCACATGTTATAAGTTAAAGTGAGCATAATAATTCAGTTCCTTTGAAA
ACaaacacccttacagtgtactttgggAAACTTGGAAAAGGGACCTTTga
agggccgcacgtatggtaggTCGCTTACCTTGAGTGGGATACCCCCGGTG
GTATCTCTAGTTTcttaacccagctggcacacaacgttgtttcaacgttc
acctaacgttatatggacgacacaacgttgtgtgccagctaggaACATTA
AACGCCAtgtctttatttttctatttgtaGGAATGCCCAATGGAGCAATT
ACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTGGTTGTAAAC
CAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTATAGCTTCTGC
TCGAATAAAGTCGAAGGACGCCCGTTAGATTAGAAACAAGTTTGAAGGAG
GCTCAACGAAAGCTAACAACTGTCATATAACCCTAGATAAATTTGTTGTT
AAATGAGGATTTGAATGATTTTGTAGAGAATATAGCTTATATTTGATGTA
CTTGttactgtacacgttttttattagaacatccaccatctttgaagact
tcagatgttcttaacttttttagtactaagcccaaaaatgttcttaacat
gttcttaatttcac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000010TCONS_00000010Clytia hemisphaericatranscript
TCONS_00000011TCONS_00000011Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000011-proteinTCONS_00000011-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:314485..318198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.71	0.25	0.22	0.58	0.44	0.35	2	1.41	1.81	3.26	1.38	1.3	30.98	32.72	47.63	40.47	4	13.3	1.24	2.06	0.48	0.37	0.28	1.15	0.21	0.81	0.25	0.18	0.21	0.44