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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009824 ID=TCONS_00009824|Name=TCONS_00009824|organism=Clytia hemisphaerica|type=transcript|length=263bp
CATTGATTCAGGAGCTCAACAAAACACGACGGCGTAGCCAGAAGCCCGCC
CTCGACCTGGACGATACACAAGCACTAAACAAGAATATAGCAAGTGTTGC
TAACCTTACCAGTGCTGTTAACGCGAGCATAATGGATATAAATATAGATG
ATGGTGAAGTTTCTTCCCACTCATTAAACAGTACTATCACACACGAACCA
GGCGTAGAAGATATCAACCCAGTGAATCTGGAAACtgaACCTATCTCGGT
ATCATTGGCTCAG Run BLAST on NCBI transcript from alignment at sc0000099:553466..555603+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009824 ID=TCONS_00009824|Name=TCONS_00009824|organism=Clytia hemisphaerica|type=transcript|length=2138bp|location=Sequence derived from alignment at sc0000099:553466..555603+ (Clytia hemisphaerica)
CATTGATTCAGGAGGTAAATATTAAGCAAAcattcaataggtaaaagttg
gttattgattCGACGAGGCAAAAGCCGAGTTGacatcaccgagggttaat
aaatacaataaccaacgaaaacctattgaatatatgttttattatatacc
tagaggcaaaaacaaaacattatttaCGTCAATAGTCAAACGTTTCACTT
TATAAAGcactcccataatcgaacgttcgaatgtttttcttttttattaa
ttttcttaattacttcgagtcataaaatttgttcatgaaattgacaatag
atttattttaatgaatttctttgatacaACAAGAGCGACAAAAAAAATCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggg
gttctcaTATGGTCTgacccacggcatgtgccgcctTTAATGGTAGATTT
TTCGAGGCtacttacttttgatagagcgcgctacaagggtcttcttttaa
cTGAATACACTGTAAGCATGTGTTTGGGGACAACTGAATTGCAAGCCTGA
CATTAAAACTCTGGTCTATCTTTAAAGGTTTAACTGGCACCCATTTCGAT
TTGTTTTacacattgtgtcgacatctctGGCTCACtttcgaaatgcactg
taagggtgtacttttgatagagcgCACTACAAGAGTCTTCTTTTAGCTGG
GTGCACTATAAGGATTTGTTTGGATACTACTGAGTTGCAATCTGATAGTA
AAAATCTAGTGTAGTGTACCTTTAAAGTTTTGACTCGCACCCATTTCGAT
TTGTTTTACACATTGTATCGACATCTCTGGCACACTTTCAGGTGGTTTCG
ctaaaataagatatgaaattaAACTACACCCGAAGGGTCAGAAACGTTAG
GTAaaatgcactataagggttcTTTTTCACTACTCAAGAGCTGCATTATA
TGGGTCTaattttgaaagccattttttcgCGGCACATGCcatcgtttaga
aatcgagtgctcCCCTCAATCCTGGATGTCAATGGGGTTTACCAGGGGTA
ACATATCTTGGGCATGTTCATTAAATTGCAAACTGTGGTCGTAAAGGCAA
TGACTTACCGTCAGCAATAAAAAACAGGTTATGGGGTATTtatgaaaaat
atcttgtaaagAATCTGAGATGTATAGATGATATGTTTAATCACTTCTTT
CTTATTCTCTCTTTCAGCTCAACAAAACACGACGGCGTAGCCAGAAGCCC
GCCCTCGACCTGGACGATACACAAGCACTAAACAAGAATATAGCAAGTGT
TGCTAACCTTACCAGTGCTGTTAACGCGAGCATAATGGATATAAATATAG
ATGATGGTGAAGTTTCTTCCCACTCATTAAACAGTACTATCACACACGAA
CCAGGCGTAGAAGATATCAACCCAGTGAATCTGGAAACGTAAAAATTTAT
ACCTGTTTCATTACTGACttacaatttttcatactgCTTGCTTAGTGAAG
ACTCTTAACCATTAATCTGTCCTCTAAGTTTAGCGCCCCGTACTTAGGCA
AAttgagggtacggtatgtgccgttcttaagggtaccttttttggacttc
caaagtcccgctaagggtcggaaaaatcaggaaatctaatttcagtccca
ctaagggtcggaaagaTTTACTATTTATTCAGACTTCCCTGTAGCTGGAA
AGAATCTCAAACAAAGCGCTTGATTATTAAGCATTCAAACGCTATAAATT
GACTTCTAAGAATAGATATTGCCTAGagtttaaatttgttttttatcttt
tcttttttagtgaACCTATCTCGGTATCATTGGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009824-exon-sc0000099-1491911889:553466..553479 | TCONS_00009824-exon-sc0000099-1491911889:553466..553479 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1510915933:553466..553479 | TCONS_00009824-exon-sc0000099-1510915933:553466..553479 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1575043694:553466..553479 | TCONS_00009824-exon-sc0000099-1575043694:553466..553479 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1491911889:554983..555203 | TCONS_00009824-exon-sc0000099-1491911889:554983..555203 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1510915933:554983..555203 | TCONS_00009824-exon-sc0000099-1510915933:554983..555203 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1575043694:554983..555203 | TCONS_00009824-exon-sc0000099-1575043694:554983..555203 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1491911889:555576..555603 | TCONS_00009824-exon-sc0000099-1491911889:555576..555603 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1510915933:555576..555603 | TCONS_00009824-exon-sc0000099-1510915933:555576..555603 | Clytia hemisphaerica | exon |
| TCONS_00009824-exon-sc0000099-1575043694:555576..555603 | TCONS_00009824-exon-sc0000099-1575043694:555576..555603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:553466..555603 + |
Blast
The following BLAST results are available for this feature:
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