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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001087 ID=TCONS_00001087|Name=TCONS_00001087|organism=Clytia hemisphaerica|type=transcript|length=2888bpRun BLAST on NCBI protein sequence of TCONS_00001087-protein >TCONS_00001087-protein ID=TCONS_00001087-protein|Name=TCONS_00001087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=796bp MVMLLLAIWFYGITATTIQNEFSSTFTSIELASISPSASSMKTNTLNEPSRun BLAST on NCBI transcript from alignment at sc0000007:60040..73166- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001087 ID=TCONS_00001087|Name=TCONS_00001087|organism=Clytia hemisphaerica|type=transcript|length=13127bp|location=Sequence derived from alignment at sc0000007:60040..73166- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:60040..73166- >TCONS_00001087 ID=TCONS_00001087|Name=TCONS_00001087|organism=Clytia hemisphaerica|type=CDS|length=35865bp|location=Sequence derived from alignment at sc0000007:60040..73166- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001087 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3) HSP 1 Score: 315.079 bits (806), Expect = 3.628e-89 Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query: 900 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2204
S +K NIKLG + C Q+ C+GPL P T Y I + F FT T S P +T + + EGV + + +I + V +V + CR+K S +++ S +S+ R + S L +K + + P+ I F + +DS + ++E+E ++DVG+ + ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G R YI TQGPLP T D FW+MVWEQ IVMVTQC EK RVKC YWPA S YG++ + + E++ PEWT REF + E + RL+RHF YT WPDHGVP +++ ++QFV TVR ++ P GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V +R R MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967 The following BLAST results are available for this feature:
BLAST of TCONS_00001087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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