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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009728 ID=TCONS_00009728|Name=TCONS_00009728|organism=Clytia hemisphaerica|type=transcript|length=1925bp
aaagaaaaagttataATTACACTGAAAAGAAATTCTTACTAAATTCTAAC
TCACTTACTTGGTAACTCAAAAAACACGTGTCTGAAACAAAAGACGGGGG
TTATAAAACATTTAATTAGCttatatttcaatatatcaTAACCCCCGGAT
TAAAAGTAAATTGCcaacaagtccaaaaaatctTAAATGAAGAGTTTGCA
ACTGAGATAGTCTTCACATTCAAGAAAACTCATTTACAAAAAAACACATA
CTCCAGTGAGGTCACAGAGACCAACAGGACAACAGGAGGGCAATAATGTT
GTGTTTAGTTTTCCTTTTAGTGAGTTTGGTTGCTTTCTCAACTGGATTAG
AAAATGCAGGAATTGTACACATCCGAAAGTTAGGCTTCGATCAAGACCCA
AAGACTTTTTCACATGAGGTCATCATTCCTTGGGCTCGCCCATTCAAACC
AGGATATTGTGAATCATGGGAATGGCACACCGACGAAAGATACAGAGAAA
GACGAACTCAAATCTGCAAGAAACTCGGAGGACaACGAAAACACGAATGT
GACTCACCAAGCGGTTTCTGCCGAGACAAATGTCCTTTCACTAACGGAAG
TTACCCATACTGGCGTATCCGTAATGCGGAACCCGTCTCCTTTGTTTACT
TGATCAAGACacttcaattttttgataacGCTAATGCAAGAAAAGCACTT
TCCGCTGATCCAAGTAAAGGATATGCTAGCTCCAGATATGCGCCAGGATA
TTCACCAAGCAACGCTTTCGACAACAATCCAGAATCAGTTTGGGCGCCAA
ATGGTATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAATTCCAAAAC
CCCGTCAAAATTAACAGCATCCGAATCCAGGGCGATTCTGATCACCGTGA
CCGCATCCCATCGACGTTCTACGTTGAAGCATCGtgcgaaaaatatttca
aaacgtACGCTTCTCAATGGACCATTGAGAATTTCGACCGTGTTGTTGAT
AAGAGATATAACCGCCCACGACAAAATAGTGGTAGATGGTAAATGACGCC
CACCGCCCATTATCATAGACGGTTTTTATAAAGCTAGATTTACATTGTGA
ATTTATTTTAGTTATTTCATTGATTAGAATTTTTAAGTTGAGCAAAATCT
CCATCTCTCTCTTCAATCTCTCTTCTTTCGGCGCTTTTTTTCAGTCTCAG
TTCGCAAACCTTTTCCTCTCATATTTTCTGTATTCAAGCTTTCGATCACT
TTTGAACAActctcttttcttttccttctaGCTAGaccatttcaaattat
tttatgaCAATCACAACAccattttagatattttatattacttttcattt
tttccaattttcaaaaattgcgatgtaaaaatatttgttttggttttttg
aaaacaaaacaaacctcataaacaaaaaaattgttatcCCTGATAATTCA
AAATAACGTTCGTCCTTCCAAAATTCCccattttatttggaaaataaatg
tttttcattACCACTGCCAGCCCAATGTACAAGAAAAANatctttctttt
tcttctagTTAGaccatttcaaattattttatgaCAATCACAACAccatt
ttagatattttatattacttttcatttttccaattttcaaaaattgcgat
gtaaaaatatttatttgttttggtttttagaaaacaaaacaaacctcATA
AACAAAGAATTTGTTATCCCTGATAATTCAAAATAACGTTCGTCCTTCCG
AAATTCCCCATTTATTTGGAaaataaatgtttttcattACCACTGCCAGT
CCAATGTACCAGAAAAAATATCCATAAGTTTTGCGGTATGGCGAGTGAGC
GAGTGTCCGGCCAAATCCATTTCTATGTTCCGATTGAaagcaataaaata
ttttgtccacAAATGGAACCATTCG Run BLAST on NCBI protein sequence of TCONS_00009728-protein >TCONS_00009728-protein ID=TCONS_00009728-protein|Name=TCONS_00009728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MLCLVFLLVSLVAFSTGLENAGIVHIRKLGFDQDPKTFSHEVIIPWARPF
KPGYCESWEWHTDERYRERRTQICKKLGGQRKHECDSPSGFCRDKCPFTN
GSYPYWRIRNAEPVSFVYLIKTLQFFDNANARKALSADPSKGYASSRYAP
GYSPSNAFDNNPESVWAPNGISSKGLNWIAYEFQNPVKINSIRIQGDSDH
RDRIPSTFYVEASCEKYFKTYASQWTIENFDRVVDKRYNRPRQNSGRW Run BLAST on NCBI transcript from alignment at sc0000098:78366..82149- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009728 ID=TCONS_00009728|Name=TCONS_00009728|organism=Clytia hemisphaerica|type=transcript|length=3784bp|location=Sequence derived from alignment at sc0000098:78366..82149- (Clytia hemisphaerica)
AAAGAAAAAGTTATAATTACACTGAAAAGAAATTCTTACTAAATTCTAAC
TCACTTACTTGGTAACTCAAAAAACACGTGTCTGAAACAAAAGACGGGGG
TTATAAAACATTTAATTAGCTTATATTTCAATATATCATAACCCCCGGAT
TAAAAGTAAATTGCCAACAAGTCCAAAAAATCTTAAATGAAGAGTTTGCA
ACTGAGATAGTCTTCACATTCAAGAAAACTCATTTACAAAAAAACACATA
CTCCAGTGAGGTCACAGAGACCAACAGGACAACAGGAGGGCAATAATGTT
GTGTTTAGTTTTCCTTTTAGTGAGTTTGGTTGCTTTCTCAACTGGATTAG
AAAATGCAGGAATTGTACACATCCGAAAGTTAGGCTTCGATCAAGACCCA
AAGACTTTTTCACATGAGGTAAGTTTTTTCATAAGAACATTCAAATTTTT
TTAAGTCTTCTGATGTTCTTAACTCTTGAGTTTAAAGCCTAAAAATGTTC
TTAAAATGTTCTTATCATCACCATTTTCTAAGTGTCTGTTTTTTCTAAGA
AAACGGGTGTTTTGGAATCCACAAAGCCCTAAAATGTTCTTAACTTGTTC
ATAATAATTTAGCTAAAGAATCTATATGTTCTTATATAGTTTTTTTCTTA
TTAAAAGTTTAATTTTGAAAGAATTTTGAATTTACAAATAGGGAAAAATA
AAGAGAACGCATTGAAAAGTTCCGCCCAGCGTATGACAACTCAAAATAGT
CTCTCGAAGGATCGCGATTTCTCCTTGTTTGGAACTCTTCAAGCATACGA
AAACTATGAAAAGTCTTAAATCTTTCTAAGATCCCATTTTTCGCAAAAAC
TTTCAACAATCTCCAGTCCTAGCACTGCGGGGGTCATAATTTCTTAATAA
CTTTAATTTGCATAAGCCTCTGGTCTCGTTCCTTGAAACAAACTTTCGCT
TCATTGGTTTATTGGTTTATCCAATTCAAAAGTTCCTTTTTTACCCAGCT
TATCGCCCCTGGCCCTCTCATATCATCTTTACATGGTCTCGCTAATTCAA
AATTCGCCTTTACCTCCAATGCATAATCTCTTGGTCTCGTTCATTCAAAC
AAATTTTCCCCTTTTACCCTCACAGGTCATCATTCCTTGGGCTCGCCCAT
TCAAACCAGGATATTGTGAATCATGGGAATGGCACACCGACGAAAGATAC
AGAGAAAGACGAACTCAAATCTGCAAGAAACTCGGAGGACGTAAGTCGAT
TTTCGGACAATTTTACTATATTTCGGATAGGGTTTTTTCTCGGACACTTT
GGAATCGTTTATCAAAGACAATTTTCGTTCCTGATATAGCTTTATTAACA
TATTTGAGAAATTTTAAAAAGAGGATTTAGAAACATGGCAAAAGTTTAAA
ATTAACAAATACCCCATGAAAACCATGGAACGAATTTGTCTCGAAAACAA
GGGAAAAGCCCTTAAAAGAATCGTAATTGTTTCAAAATCAAAAATCAAAA
CAAGTATTATTTCTGGATGAGTCCAATAAAAAGCGGTAATCGAAAAAGTA
GAAAATGTAGGAAAAATCAATATTCCGTGATGTTCACGACGTAAAGTTTT
ATACGGAAGCACCAAAGAAAGCCCGGGTGTTTGCCACCATTTTGAAATAA
AAAAATAATGAAACTGGTGGGCTATAAAAAGGCCCGGGTACTTTGGGTGC
TTCCGTCTAAAACATTACGTCATGAATATCAATATTTTTCTTCTTCTTTC
AGAACGAAAACACGAATGTGACTCACCAAGCGGTTTCTGCCGAGACAAAT
GTCCTTTCACTAACGGAAGTTACCCATACTGGCGTATCCGTAATGCGGAA
CCCGTCTCCTTTGTTTACTTGATCAAGACACTTCAATTTTTTGATAACGC
TAATGCAAGAAAAGCACTTTCCGCTGATCCAAGTAAAGGATATGCTAGCT
CCAGATATGCGCCAGGTAAGGTTCATCGAATTCTAAAATGTAGACATTGT
ATTTATGAGAATGTCAATGCAATGACTTCAGAAACTGTGACGTCATTCTT
CCTGGTAAAATTAAATCCAATCTCCTTTAAAGTCCGGTCTCCACTTTCAC
ACGAAATGAGCGAAAACTTTTTGACGTTTTTGTAAGGTTTTTTTCATTGG
TCGGCTGAAAAATGAAGCAATTCCAATGGTCAAAATTGACACAACGGTTG
AAAAAAGTTGAACTTCCTTCAACTTTTTTTTTATTTGCGCGAAACTTTTT
TATGACGTTAGGCAAAAAAGGTTGAGAAAAAAACTGTCCGCCCATTTCGC
GCGAAAGTGGATGCCGGTTCATTCAAGACGGTTCATTCAAAAGCGAGTTT
NCGCCCATTTCGCGCGAAAGTGGATGCCGGTTCATTCAAGACGGTTCATT
CAAAAGTGAGTTTAAATTTATAACAGATCAATTCCTTCCATCATTGTATT
TAGGCAAGATTCATCAGAAATTTTGCTGAGTTTTGTTGAATTTTCAGACA
GAAAAGCCTCTTTATATAACTCGCTGAGATGAAAATCCATCGAAGACGAA
AGAACTTTGTAAATCTAAAAAAGCATACCTTCCCTAATTGTATTTCTCCG
TGCAGGATATTCACCAAGCAACGCTTTCGACAACAATCCAGAATCAGTTT
GGGCGCCAAATGGTATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAA
TTCCAAAACCCCGTCAAAATTAACAGCATCCGAATCCAGGGCGATTCTGA
TCACCGTGACCGCATCCCATCGACGTTCTACGTTGAAGCATCGTGCGAAA
AATATTTCAAAACGTACGCTTCTCAATGGACCATTGAGAATTTCGACCGT
GTTGTTGATAAGAGATATAACCGCCCACGACAAAATAGTGGTAGATGGTA
AATGACGCCCACCGCCCATTATCATAGACGGTTTTTATAAAGCTAGATTT
ACATTGTGAATTTATTTTAGTTATTTCATTGATTAGAATTTTTAAGTTGA
GCAAAATCTCCATCTCTCTCTTCAATCTCTCTTCTTTCGGCGCTTTTTTT
CAGTCTCAGTTCGCAAACCTTTTCCTCTCATATTTTCTGTATTCAAGCTT
TCGATCACTTTTGAACAACTCTCTTTTCTTTTCCTTCTAGCTAGACCATT
TCAAATTATTTTATGACAATCACAACACCATTTTAGATATTTTATATTAC
TTTTCATTTTTTCCAATTTTCAAAAATTGCGATGTAAAAATATTTGTTTT
GGTTTTTTGAAAACAAAACAAACCTCATAAACAAAAAAATTGTTATCCCT
GATAATTCAAAATAACGTTCGTCCTTCCAAAATTCCCCATTTTATTTGGA
AAATAAATGTTTTTCATTACCACTGCCAGCCCAATGTACAAGAAAAANAT
CTTTCTTTTTCTTCTAGTTAGACCATTTCAAATTATTTTATGACAATCAC
AACACCATTTTAGATATTTTATATTACTTTTCATTTTTCCAATTTTCAAA
AATTGCGATGTAAAAATATTTATTTGTTTTGGTTTTTAGAAAACAAAACA
AACCTCATAAACAAAGAATTTGTTATCCCTGATAATTCAAAATAACGTTC
GTCCTTCCGAAATTCCCCATTTATTTGGAAAATAAATGTTTTTCATTACC
ACTGCCAGTCCAATGTACCAGAAAAAATATCCATAAGTTTTGCGGTATGG
CGAGTGAGCGAGTGTCCGGCCAAATCCATTTCTATGTTCCGATTGAAAGC
AATAAAATATTTTGTCCACAAATGGAACCATTCG Coding sequence (CDS) from alignment at sc0000098:78366..82149- >TCONS_00009728 ID=TCONS_00009728|Name=TCONS_00009728|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at sc0000098:78366..82149- (Clytia hemisphaerica)
GATATTCACCAAGCAACGCTTTCGACAACAATCCAGAATCAGTTTGGGCG
CCAAATGGTATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAATTCCA
AAACCCCGTCAAAATTAACAGCATCCGAATCCAGGGCGATTCTGATCACC
GTGACCGCATCCCATCGACGTTCTACGTTGAAGCATCGTGCGAAAAATAT
TTCAAAACGTACGCTTCTCAATGGACCATTGAGAATTTCGACCGTGTTGT
TGATAAGAGATATAACCGCCCACGACAAAATAGTGGTAGATGGTAAAACG
AAAACACGAATGTGACTCACCAAGCGGTTTCTGCCGAGACAAATGTCCTT
TCACTAACGGAAGTTACCCATACTGGCGTATCCGTAATGCGGAACCCGTC
TCCTTTGTTTACTTGATCAAGACACTTCAATTTTTTGATAACGCTAATGC
AAGAAAAGCACTTTCCGCTGATCCAAGTAAAGGATATGCTAGCTCCAGAT
ATGCGCCAGGTCATCATTCCTTGGGCTCGCCCATTCAAACCAGGATATTG
TGAATCATGGGAATGGCACACCGACGAAAGATACAGAGAAAGACGAACTC
AAATCTGCAAGAAACTCGGAGGACATGTTGTGTTTAGTTTTCCTTTTAGT
GAGTTTGGTTGCTTTCTCAACTGGATTAGAAAATGCAGGAATTGTACACA
TCCGAAAGTTAGGCTTCGATCAAGACCCAAAGACTTTTTCACATGAGGAT
ATTCACCAAGCAACGCTTTCGACAACAATCCAGAATCAGTTTGGGCGCCA
AATGGTATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAATTCCAAAA
CCCCGTCAAAATTAACAGCATCCGAATCCAGGGCGATTCTGATCACCGTG
ACCGCATCCCATCGACGTTCTACGTTGAAGCATCGTGCGAAAAATATTTC
AAAACGTACGCTTCTCAATGGACCATTGAGAATTTCGACCGTGTTGTTGA
TAAGAGATATAACCGCCCACGACAAAATAGTGGTAGATGGTAAAACGAAA
ACACGAATGTGACTCACCAAGCGGTTTCTGCCGAGACAAATGTCCTTTCA
CTAACGGAAGTTACCCATACTGGCGTATCCGTAATGCGGAACCCGTCTCC
TTTGTTTACTTGATCAAGACACTTCAATTTTTTGATAACGCTAATGCAAG
AAAAGCACTTTCCGCTGATCCAAGTAAAGGATATGCTAGCTCCAGATATG
CGCCAGGTCATCATTCCTTGGGCTCGCCCATTCAAACCAGGATATTGTGA
ATCATGGGAATGGCACACCGACGAAAGATACAGAGAAAGACGAACTCAAA
TCTGCAAGAAACTCGGAGGACATGTTGTGTTTAGTTTTCCTTTTAGTGAG
TTTGGTTGCTTTCTCAACTGGATTAGAAAATGCAGGAATTGTACACATCC
GAAAGTTAGGCTTCGATCAAGACCCAAAGACTTTTTCACATGAGGATATT
CACCAAGCAACGCTTTCGACAACAATCCAGAATCAGTTTGGGCGCCAAAT
GGTATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAATTCCAAAACCC
CGTCAAAATTAACAGCATCCGAATCCAGGGCGATTCTGATCACCGTGACC
GCATCCCATCGACGTTCTACGTTGAAGCATCGTGCGAAAAATATTTCAAA
ACGTACGCTTCTCAATGGACCATTGAGAATTTCGACCGTGTTGTTGATAA
GAGATATAACCGCCCACGACAAAATAGTGGTAGATGGTAAAACGAAAACA
CGAATGTGACTCACCAAGCGGTTTCTGCCGAGACAAATGTCCTTTCACTA
ACGGAAGTTACCCATACTGGCGTATCCGTAATGCGGAACCCGTCTCCTTT
GTTTACTTGATCAAGACACTTCAATTTTTTGATAACGCTAATGCAAGAAA
AGCACTTTCCGCTGATCCAAGTAAAGGATATGCTAGCTCCAGATATGCGC
CAGGTCATCATTCCTTGGGCTCGCCCATTCAAACCAGGATATTGTGAATC
ATGGGAATGGCACACCGACGAAAGATACAGAGAAAGACGAACTCAAATCT
GCAAGAAACTCGGAGGACATGTTGTGTTTAGTTTTCCTTTTAGTGAGTTT
GGTTGCTTTCTCAACTGGATTAGAAAATGCAGGAATTGTACACATCCGAA
AGTTAGGCTTCGATCAAGACCCAAAGACTTTTTCACATGAGGATATTCAC
CAAGCAACGCTTTCGACAACAATCCAGAATCAGTTTGGGCGCCAAATGGT
ATCTCCAGTAAAGGGTTGAACTGGATCGCTTACGAATTCCAAAACCCCGT
CAAAATTAACAGCATCCGAATCCAGGGCGATTCTGATCACCGTGACCGCA
TCCCATCGACGTTCTACGTTGAAGCATCGTGCGAAAAATATTTCAAAACG
TACGCTTCTCAATGGACCATTGAGAATTTCGACCGTGTTGTTGATAAGAG
ATATAACCGCCCACGACAAAATAGTGGTAGATGGTAAAACGAAAACACGA
ATGTGACTCACCAAGCGGTTTCTGCCGAGACAAATGTCCTTTCACTAACG
GAAGTTACCCATACTGGCGTATCCGTAATGCGGAACCCGTCTCCTTTGTT
TACTTGATCAAGACACTTCAATTTTTTGATAACGCTAATGCAAGAAAAGC
ACTTTCCGCTGATCCAAGTAAAGGATATGCTAGCTCCAGATATGCGCCAG
GTCATCATTCCTTGGGCTCGCCCATTCAAACCAGGATATTGTGAATCATG
GGAATGGCACACCGACGAAAGATACAGAGAAAGACGAACTCAAATCTGCA
AGAAACTCGGAGGACATGTTGTGTTTAGTTTTCCTTTTAGTGAGTTTGGT
TGCTTTCTCAACTGGATTAGAAAATGCAGGAATTGTACACATCCGAAAGT
TAGGCTTCGATCAAGACCCAAAGACTTTTTCACATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009728-exon-sc0000098-1575043694:81732..82149 | TCONS_00009728-exon-sc0000098-1575043694:81732..82149 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1575043694:80910..81024 | TCONS_00009728-exon-sc0000098-1575043694:80910..81024 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1575043694:80185..80397 | TCONS_00009728-exon-sc0000098-1575043694:80185..80397 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1575043694:78366..79544 | TCONS_00009728-exon-sc0000098-1575043694:78366..79544 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1510915933:81732..82149 | TCONS_00009728-exon-sc0000098-1510915933:81732..82149 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1510915933:80910..81024 | TCONS_00009728-exon-sc0000098-1510915933:80910..81024 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1510915933:80185..80397 | TCONS_00009728-exon-sc0000098-1510915933:80185..80397 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1510915933:78366..79544 | TCONS_00009728-exon-sc0000098-1510915933:78366..79544 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1491911889:81732..82149 | TCONS_00009728-exon-sc0000098-1491911889:81732..82149 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1491911889:80910..81024 | TCONS_00009728-exon-sc0000098-1491911889:80910..81024 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1491911889:80185..80397 | TCONS_00009728-exon-sc0000098-1491911889:80185..80397 | Clytia hemisphaerica | exon |
| TCONS_00009728-exon-sc0000098-1491911889:78366..79544 | TCONS_00009728-exon-sc0000098-1491911889:78366..79544 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:78366..82149 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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