TCONS_00009671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009671
Unique NameTCONS_00009671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009671 ID=TCONS_00009671|Name=TCONS_00009671|organism=Clytia hemisphaerica|type=transcript|length=461bp
CGTCTTTCTCTAAAAGCTGCTCAAAAGTAGATGTATGATCAGAATACACT
ATCCTcaaacatctttcgtggaggtgatttattttttgatctaGCCTGCG
AACATAAAACATCCAGACAAGCGAACAATAATTGAATTGACTTCGAAAGA
AGGCATTCATGAgcctttgttttttcttttgatttatgtaCGGTGTTACC
CTCGCAAGTGCACTGATTTTCTGGCTAGCTTTCTTATAAATCATGTTAAT
GTGTGGCTCAAAAGTCAGACAGTTGTCAAAAGTTAATCCTAGGGTCTTGC
CTGAGTTGCTGTTAAAGATGCGTTCATTCTGTATAGTAATGAAGATTTCT
TTGCTGGTATTGTTAGCTATCAACTCAGACTTGTCTGCATTCCCTTTCAT
TCGATTTTGGGTTATCCATTCAAAGATGATAGCAGCTCCATTCGAGAGCT
CCTCACCAACC
Run BLAST on NCBI

protein sequence of TCONS_00009671-protein

>TCONS_00009671-protein ID=TCONS_00009671-protein|Name=TCONS_00009671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
VGEELSNGAAIIFEWITQNRMKGNADKSELIANNTSKEIFITIQNERIFN
SNSGKTLGLTFDNCLTFEPHINMIYKKASQKISALARVTPYINQKKKQRL
MNAFFRSQFNYCSLVWMFYVRRLDQKINHLHERCLRIVYSDHTSTFEQLL
EKD
Run BLAST on NCBI

transcript from alignment at sc0000097:527254..527714

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009671 ID=TCONS_00009671|Name=TCONS_00009671|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000097:527254..527714 (Clytia hemisphaerica)
GGTTGGTGAGGAGCTCTCGAATGGAGCTGCTATCATCTTTGAATGGATAA
CCCAAAATCGAATGAAAGGGAATGCAGACAAGTCTGAGTTGATAGCTAAC
AATACCAGCAAAGAAATCTTCATTACTATACAGAATGAACGCATCTTTAA
CAGCAACTCAGGCAAGACCCTAGGATTAACTTTTGACAACTGTCTGACTT
TTGAGCCACACATTAACATGATTTATAAGAAAGCTAGCCAGAAAATCAGT
GCACTTGCGAGGGTAACACCGtacataaatcaaaagaaaaaacaaaggcT
CATGAATGCCTTCTTTCGAAGTCAATTCAATTATTGTTCGCTTGTCTGGA
TGTTTTATGTTCGCAGGCtagatcaaaaaataaatcacctccacgaaaga
tgtttgAGGATAGTGTATTCTGATCATACATCTACTTTTGAGCAGCTTTT
AGAGAAAGACG

Coding sequence (CDS) from alignment at sc0000097:527254..527714

>TCONS_00009671 ID=TCONS_00009671|Name=TCONS_00009671|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000097:527254..527714 (Clytia hemisphaerica)
GTTGGTGAGGAGCTCTCGAATGGAGCTGCTATCATCTTTGAATGGATAAC
CCAAAATCGAATGAAAGGGAATGCAGACAAGTCTGAGTTGATAGCTAACA
ATACCAGCAAAGAAATCTTCATTACTATACAGAATGAACGCATCTTTAAC
AGCAACTCAGGCAAGACCCTAGGATTAACTTTTGACAACTGTCTGACTTT
TGAGCCACACATTAACATGATTTATAAGAAAGCTAGCCAGAAAATCAGTG
CACTTGCGAGGGTAACACCGtacataaatcaaaagaaaaaacaaaggcTC
ATGAATGCCTTCTTTCGAAGTCAATTCAATTATTGTTCGCTTGTCTGGAT
GTTTTATGTTCGCAGGCtagatcaaaaaataaatcacctccacgaaagat
gtttgAGGATAGTGTATTCTGATCATACATCTACTTTTGAGCAGCTTTTA
GAGAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005407XLOC_005407Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009671-proteinTCONS_00009671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009671-exon-sc0000097-1491911889:527254..527714TCONS_00009671-exon-sc0000097-1491911889:527254..527714Clytia hemisphaericaexon
TCONS_00009671-exon-sc0000097-1510915933:527254..527714TCONS_00009671-exon-sc0000097-1510915933:527254..527714Clytia hemisphaericaexon
TCONS_00009671-exon-sc0000097-1575043694:527254..527714TCONS_00009671-exon-sc0000097-1575043694:527254..527714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:527254..527714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.38223 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59881	0	1.16018	0.214635	0.954976	0.171287	0.231444	0.192698	0.623205	0	0.65665	0.797902	0.211954	0.137321	0	0.531062	0	0.516922	1.11584	0	0.747073	0.260858	0	0.33917	0.302309	0.860622	3.38223	0.946315	0.176538	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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