Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009665 ID=TCONS_00009665|Name=TCONS_00009665|organism=Clytia hemisphaerica|type=transcript|length=1420bp
GTATATGTTGATTTTTGATGTttatttttgatgttgttaTTCTTGTCGTT
CGtatgaaaagaaattatgaGATGTGAATTTGTAGAACGACTGATGTTTT
TGAAGTGCTCGTCACAGTATTAAGAGACATTGTTGGTGTTACTACTGATT
CATTTCTATAAACGAAATATGGATTCTGCCCATGGCGATGATCGGAATCT
AGCTCATAGCGCTGCTGGTAGGAATCCAAACAAATATGAAGAAGGCCAAC
AAAATCAGATTGTAAAACtaaaagaggaaaataaaaaagaaattcaaaaa
ctgACTTATGAGTCAAAGATCGCGTTGATGGAATCGCAAATGAAAATCGT
CAACTTGGAGAAAGATAATCAAACGTTAGGTCACCAGTTGGAGATGTTAA
AACTGAAAACCGTCCACGAAAAGGATGCACAGAAAGGCCTGGCTGATCGT
GAATTGGAGAGGAAAAATGCTGAGCTTGCAAAAAAATTGAGTGAAATGGA
GAAACAACTGATTGTGAAAGGGAATGAGTTTAAAGTGAAATTAGCTGAAA
AAGATCATGAGCTCGTGTTAAAATTGGCTGAAAAAGATAACGAGCTCGTG
tcaaaaatggctaaaaaagacaaagaattGGTAGCCAAAGAAAACGAATT
CAAATTGAAgttcaaagatttggaaaacgAAAACAAGGTAGACATTGAAA
AACTTCGAGGCGAAATCGAAAAGCTGAGAACAACCAAAGCAGATAATGAG
CAACCGAAAGTTAATAAAGTTACCAATGTTCCCCAAATTGAAATCAAGAA
ACCTCAACCAAATCCTTTCACAGAAGATGAACAATTTTCATGGGGATTAG
ATATGTTCTTTGGAAGAGGTGGGACCTGGACCAAAATGGTTTACGATTCC
TATGAATCTTGGTATCAAGGAATAACTTtgcttttgaaaaacaaaacacc
TTCAAAAACGTACCAAAGAATTGATAAAGAATATTTCTTTATCAAGAAAG
AGTTTCATCAATGTCACCAAAAACTATGCTTCAAATCTTATGACCCTACG
CGTGTACTTGGCAGACCCCAGGAGCGTGATAATGAAATTTCCACCCCTAT
TTGGTTGAATAAAGAGATAATCAGGCATTTTAAAGTTACCCTCCTTCATC
CGAGACAACAAGAGTCGTGCGTAAAATTCGGCAATCCGGTAAGAAGAGAA
CCTCTTTTTTGGTGGGATGTTGAAAATGTAACTGTTGATTTTTACTTTGG
AGAGAAAAGATCTGCTGTTCTTTTGGTGCAGTATCGAAGAACTCAACTTA
cagaaaatgatcaaaactaaAAGTCCTTTATTTTTGGAGCATTTTAATCT
GACactagaccttttcataaattacgttacgaacatcacttgcatTACAT
CATTAATATAGATTATAAAC Run BLAST on NCBI protein sequence of TCONS_00009665-protein >TCONS_00009665-protein ID=TCONS_00009665-protein|Name=TCONS_00009665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MDSAHGDDRNLAHSAAGRNPNKYEEGQQNQIVKLKEENKKEIQKLTYESK
IALMESQMKIVNLEKDNQTLGHQLEMLKLKTVHEKDAQKGLADRELERKN
AELAKKLSEMEKQLIVKGNEFKVKLAEKDHELVLKLAEKDNELVSKMAKK
DKELVAKENEFKLKFKDLENENKVDIEKLRGEIEKLRTTKADNEQPKVNK
VTNVPQIEIKKPQPNPFTEDEQFSWGLDMFFGRGGTWTKMVYDSYESWYQ
GITLLLKNKTPSKTYQRIDKEYFFIKKEFHQCHQKLCFKSYDPTRVLGRP
QERDNEISTPIWLNKEIIRHFKVTLLHPRQQESCVKFGNPVRREPLFWWD
VENVTVDFYFGEKRSAVLLVQYRRTQLTENDQN Run BLAST on NCBI transcript from alignment at sc0000097:360743..362162 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009665 ID=TCONS_00009665|Name=TCONS_00009665|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at sc0000097:360743..362162 (Clytia hemisphaerica)
GTTTATAATCTATATTAATGATGTAatgcaagtgatgttcgtaacgtaat
ttatgaaaaggtctagtGTCAGATTAAAATGCTCCAAAAATAAAGGACTT
ttagttttgatcattttctgTAAGTTGAGTTCTTCGATACTGCACCAAAA
GAACAGCAGATCTTTTCTCTCCAAAGTAAAAATCAACAGTTACATTTTCA
ACATCCCACCAAAAAAGAGGTTCTCTTCTTACCGGATTGCCGAATTTTAC
GCACGACTCTTGTTGTCTCGGATGAAGGAGGGTAACTTTAAAATGCCTGA
TTATCTCTTTATTCAACCAAATAGGGGTGGAAATTTCATTATCACGCTCC
TGGGGTCTGCCAAGTACACGCGTAGGGTCATAAGATTTGAAGCATAGTTT
TTGGTGACATTGATGAAACTCTTTCTTGATAAAGAAATATTCTTTATCAA
TTCTTTGGTACGTTTTTGAAggtgttttgtttttcaaaagcaAAGTTATT
CCTTGATACCAAGATTCATAGGAATCGTAAACCATTTTGGTCCAGGTCCC
ACCTCTTCCAAAGAACATATCTAATCCCCATGAAAATTGTTCATCTTCTG
TGAAAGGATTTGGTTGAGGTTTCTTGATTTCAATTTGGGGAACATTGGTA
ACTTTATTAACTTTCGGTTGCTCATTATCTGCTTTGGTTGTTCTCAGCTT
TTCGATTTCGCCTCGAAGTTTTTCAATGTCTACCTTGTTTTcgttttcca
aatctttgaacTTCAATTTGAATTCGTTTTCTTTGGCTACCaattctttg
tcttttttagccatttttgaCACGAGCTCGTTATCTTTTTCAGCCAATTT
TAACACGAGCTCATGATCTTTTTCAGCTAATTTCACTTTAAACTCATTCC
CTTTCACAATCAGTTGTTTCTCCATTTCACTCAATTTTTTTGCAAGCTCA
GCATTTTTCCTCTCCAATTCACGATCAGCCAGGCCTTTCTGTGCATCCTT
TTCGTGGACGGTTTTCAGTTTTAACATCTCCAACTGGTGACCTAACGTTT
GATTATCTTTCTCCAAGTTGACGATTTTCATTTGCGATTCCATCAACGCG
ATCTTTGACTCATAAGTcagtttttgaatttcttttttattttcctcttt
taGTTTTACAATCTGATTTTGTTGGCCTTCTTCATATTTGTTTGGATTCC
TACCAGCAGCGCTATGAGCTAGATTCCGATCATCGCCATGGGCAGAATCC
ATATTTCGTTTATAGAAATGAATCAGTAGTAACACCAACAATGTCTCTTA
ATACTGTGACGAGCACTTCAAAAACATCAGTCGTTCTACAAATTCACATC
tcataatttcttttcataCGAACGACAAGAAtaacaacatcaaaaataaA
CATCAAAAATCAACATATAC Coding sequence (CDS) from alignment at sc0000097:360743..362162 >TCONS_00009665 ID=TCONS_00009665|Name=TCONS_00009665|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000097:360743..362162 (Clytia hemisphaerica)
ttagttttgatcattttctgTAAGTTGAGTTCTTCGATACTGCACCAAAA
GAACAGCAGATCTTTTCTCTCCAAAGTAAAAATCAACAGTTACATTTTCA
ACATCCCACCAAAAAAGAGGTTCTCTTCTTACCGGATTGCCGAATTTTAC
GCACGACTCTTGTTGTCTCGGATGAAGGAGGGTAACTTTAAAATGCCTGA
TTATCTCTTTATTCAACCAAATAGGGGTGGAAATTTCATTATCACGCTCC
TGGGGTCTGCCAAGTACACGCGTAGGGTCATAAGATTTGAAGCATAGTTT
TTGGTGACATTGATGAAACTCTTTCTTGATAAAGAAATATTCTTTATCAA
TTCTTTGGTACGTTTTTGAAggtgttttgtttttcaaaagcaAAGTTATT
CCTTGATACCAAGATTCATAGGAATCGTAAACCATTTTGGTCCAGGTCCC
ACCTCTTCCAAAGAACATATCTAATCCCCATGAAAATTGTTCATCTTCTG
TGAAAGGATTTGGTTGAGGTTTCTTGATTTCAATTTGGGGAACATTGGTA
ACTTTATTAACTTTCGGTTGCTCATTATCTGCTTTGGTTGTTCTCAGCTT
TTCGATTTCGCCTCGAAGTTTTTCAATGTCTACCTTGTTTTcgttttcca
aatctttgaacTTCAATTTGAATTCGTTTTCTTTGGCTACCaattctttg
tcttttttagccatttttgaCACGAGCTCGTTATCTTTTTCAGCCAATTT
TAACACGAGCTCATGATCTTTTTCAGCTAATTTCACTTTAAACTCATTCC
CTTTCACAATCAGTTGTTTCTCCATTTCACTCAATTTTTTTGCAAGCTCA
GCATTTTTCCTCTCCAATTCACGATCAGCCAGGCCTTTCTGTGCATCCTT
TTCGTGGACGGTTTTCAGTTTTAACATCTCCAACTGGTGACCTAACGTTT
GATTATCTTTCTCCAAGTTGACGATTTTCATTTGCGATTCCATCAACGCG
ATCTTTGACTCATAAGTcagtttttgaatttcttttttattttcctcttt
taGTTTTACAATCTGATTTTGTTGGCCTTCTTCATATTTGTTTGGATTCC
TACCAGCAGCGCTATGAGCTAGATTCCGATCATCGCCATGGGCAGAATCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009665-exon-sc0000097-1491911889:360743..362162 | TCONS_00009665-exon-sc0000097-1491911889:360743..362162 | Clytia hemisphaerica | exon |
| TCONS_00009665-exon-sc0000097-1510915933:360743..362162 | TCONS_00009665-exon-sc0000097-1510915933:360743..362162 | Clytia hemisphaerica | exon |
| TCONS_00009665-exon-sc0000097-1575043694:360743..362162 | TCONS_00009665-exon-sc0000097-1575043694:360743..362162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:360743..362162 . |
Blast
The following BLAST results are available for this feature:
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