TCONS_00000885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000885
Unique NameTCONS_00000885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000885 ID=TCONS_00000885|Name=TCONS_00000885|organism=Clytia hemisphaerica|type=transcript|length=3707bp
TTGAGAAATATTACTTCAATGCTGATAGAAAAGGCTGCAAGAATTATTCC
TTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATTTAT
AGAACAgataagaaatttttttaatagaaagTTAAAAGAGGAACtgaaaa
ggaaatcaaaagGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAGCAA
TTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAAGAC
TTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATTTTT
ACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTAGTA
ATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGGTAT
TGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTATGAT
AATAACCCATATCCTGGCTTCAATCTGGccTATGAAAGTTTGGACGAAGG
TGAACAGAGGCTTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGC
CAGTCAATATCTCATCAACAGCTGTATACGTTAATGTTACCATGGAAATT
GTTCGACTCGATGCCGTGAGTGAAAAGGGACAGTCTGTTCGGATGAAATT
ACATATTAATTATctttGGAGGAACCCATATTTAGTATGGAATCCGCTTA
ACTATAAAGGTGTTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATA
CCGCCCATACGCCTCTTCAATGAAGCGAGCAAAACACAAGGTGAATACAA
TGAGGACAATCACGCGCGGACCGTGCTTCTAACGAATGATGGCAACTGTT
CACTAACCTATGCCCAGTTCTTCAAATCCACATGCGAAATTGATGTCAGT
GATTTTCCATTTGACCAGCAATATTGCGATATGACGTTTGGTAGTTGGAG
TATGGATGAACGGTTGCTACAACTGAGAGCTGTCAAGGAAGAAGCTATAT
CTGAGCAATTGTACAAGGAAAATGGTGAATGGCATTTAACTGAAGCCACA
TTGAAGACCCATGATGTCAGATATCCGATTCACCGTCACAAACACAGCAC
CATCAAACTCTCCATACTCATAAAGCGAAAGTACATCTTTTTCATCATGA
ATTTGGTGGTACCATGTGCTCTCATTGCATGCATGATTTTCTTGGTGTTT
GTACTACCAGCCAAATCAGGAGAAAGAATCTCTCTTGGTATTACTGTCAT
GTTATCTATGGCTATCTTTCAAGAATTGTCGTCAGAGAAATTGCCAAGTA
GTTCTGATAACTATCCGTTACTTGgtgtTTATTACACGACTTCAATGTTT
GAAATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTA
TCGCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAAC
TCGCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTAC
ATTGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGA
AACCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAAT
CGGCACTTGGTAACGGGAACGGAGAAATGTcatattttccaaaatcgacG
CTCCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTC
TGTCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATT
TGTCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATC
GAAGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCT
AGATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCAC
TTACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGA
GAATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCAT
CTGTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGA
AAGAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGT
TACAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATC
TATAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAA
ATGGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAA
TAATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTT
TCAAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAG
AATGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAG
CGTCTCTTTGCNaataattaacataatatatgcatggatcgtgcatcgtg
catcgtgaatcgttggatcgcgcatcgtaaatagacgatatcgcgtttag
ataaatgcaatgcattctggtttctcggggactctcaaaggaattataat
gtcGATTATATAATAATCtggaatagattataattcccttgagggtcccc
gagaaaccagaatgcattgcatttatctaaacgcgatatcgtctattact
cTGGTAcatctttttgtatttttcgtGTTGAGGACGGCAGCCTTGAGAAA
TGAGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTC
AAATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATA
CAGTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGA
TAAAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTT
TGTAtgacttcaattttcaattcttttactGGACATAGATATGCATTGCA
AAAACAAgtcaggctcggatacagagggaggctataaccaatggaggaga
gtgcactttatcatcgtattaccttatatggaaactaattactctccacg
aataagatagcctacctcctgtatccgacacTGNAtgacttcaattttca
attcCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAG
TTGATTTTAAATTTATACGATTTGATACATAACATATTATTCTATATGAT
ACGGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTcacaaaaatttg
ataaattaaaGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGA
AAACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCC
GACAGCTTAAATTTATAatataaataaacaaatttttaattaactGGAAT
TTGGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAG
ATTGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATT
CGTGACTTAAAAAAGACATAATTTAAATTAGcactatttatttatttatt
tattgaacatttgtcaatattttgctttaatttattgtttttatagtAAT
AAGTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCC
TCGTGAGTCCTGGGACGATGACcaatttacatgtttttttataagcataa
aaaattc
Run BLAST on NCBI

transcript from alignment at sc0000005:1369793..1379694-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000885 ID=TCONS_00000885|Name=TCONS_00000885|organism=Clytia hemisphaerica|type=transcript|length=9902bp|location=Sequence derived from alignment at sc0000005:1369793..1379694- (Clytia hemisphaerica)
TTGAGAAATATTACTTCAATGCTGATAGAAAAGGCTGCAAGAATTATTCC
TTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATTTAT
AGAACAGATAAGAAATTTTTTTAATAGAAAGTTAAAAGAGGAACTGAAAA
GGAAATCAAAAGGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAGCAA
TTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAAGAC
TTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATTTTT
ACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTAGTA
ATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGGTAT
TGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTATGAT
AATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGGATA
TTATTTTAATCTAGGTCCGTTGTAGTCATTCATTGCTTCGTTCATTTTTT
AACCTCGTTGCCTCTCTCAAACTGTTTCATATATATACCAGCCAGTCTGT
TTACCATAAGTGTTAAATCATCTGGCTTTTTCATATGGAAACCATATCAG
TATGATTTAAACTGAGTTTGTTTGTGGGTGGTTTCCACCTGGTAGCAAGA
AAAGTGCACTCTAATGAGAGCTGGAATATCCGATTCTTTGCTTACTTTCG
GCTAGTACGATTTTTTGAATCTGTCGGTAAATATTACCTTCAATCAAACT
TAATTGAACAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACCTT
TTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTTGTCCGTTA
ATCACCCTAAAACCGTCCCAGTCTTTNTCCGATTCTTTGCTTACTTTCGG
CTAGTACGATTTTTTGAATCTGTCGGTAAATGTTACCTTCAATCAAACTT
AAGTGAATAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACCTTT
TCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTGTCCGCTTTA
CCACCCTAAAACCGTTCCAGTCTTTTTTTTGCACCTATAGGCAATAGAAA
AAAGTCTAAAAAAGCATTAGACTAGCAAACTAGTCTGTTAATTAATCATA
TCAGAGGGGGGGACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGCTGC
GTAGGAGAGCGAGCAAAAGTTAGTGAGAGGCTGCTGATTAATAGGCACGT
ACCTGACCGCGCGACTACGGTCGAAAAGGTGTATCAAACTTATGTGTCCT
TTCCCATCCGTCATCTTTATAGATTTGATATTTTATAAAGATGATCATTT
CTCCCTATATTGTTGTCACAAATCGAACAGTTTGGTGCATCCAGACTTTC
AAGCTCTTTCTCAGCCAAAACCATAAGATTTAACATTAAATTATATCGTT
GTCGATTTGATCATAGACTTCACAGCCGTGATTTATTCAAACCCCTGTTA
TTTTCATTTTTTAGCCTATGAAAGTTTGGACGAAGGTGAACAGAGGCTTT
TGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATCTCA
TCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGATGC
CGTGGTAGGTTTTACTCATATAGCCCGGTTTTTTTATTAGTTATCGGGTG
TGTAAAATCCTGCTTTGGGCGAGGTTTTATCGATTTGGAAAGGAGCGGAA
AATGACATTCGGTCTCCACATGACGTTTTTTCGGTCAATGAAATTGCAAG
TAACTTGACTGTCGGATAAGCTTCATATTTTCTGCAAGGCTGACGTATAA
CCGGATAAGATTTACATATTTTCTCTAAAGTCTACTTATAGTGTAAAAGC
TTTTACCCCCAACTAAGAGGTCTTAATAAACATTCGGTTGTCTGGTGATT
GTATATTGATGGTTGTCTATAGTTAGGGACTGTACACCCTGGTAGAGGAG
CAGATTATTTTCGTCTTTTTTAAATCACTTATTGGTTTCCTTACGACTTT
ATTAAAAGCAAAGACTATTCGATTCTTAGTTTCCATCTGCTTTGACTACC
CTTACTAGTAATATAGATATTGGGTGTAACAATATGGTCGAATATATTCG
TATACCGGCGCCGTCTCTAGTTTAAGAATCAGTTCTTTATCTCGTCTAGA
TTTTTATTTCTAAAGATCCTCATCTTATTGTCCCCCATATGAACCCTTCA
AATTATTTCATTTTCTTTTCAAATATTCGTAGATTATTTTATCTTAGGTT
TTCTTCCTTTATTTTCTTATAGAGTGAAAAGGGACAGTCTGTTCGGATGA
AATTACATATTAATTATGTAAGTAATGAAACATTTTGTGTCTAACTTTTT
TATCCCTAAACTAACCCTCCTTATCTGATCTCTAAGACTGAGAGTACACT
ATCCAGTTTTATCATCTCTACCATTGTTGCCGGCACCATGAAGTCATATA
GGGCCAGATAGGCAAACTTTAAGCTTTCCCAGTAGAGTAAAAACAAAAGA
TTGTGCCCTTTTTGTATCGGTTACCGGTAATCTTTTTCTTATTTTCAGCT
TTGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGTGTTT
CCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACGCCTC
TTCAATGAGTAAGCACATTTTTCATCACCCTAAAACGCCCTGAAATATTA
AAAATCGAAATTGAGAATGAACTTTATTTGGTAGTCCAATTCAGTTAAAT
TGCGCCCCTGTTGCCAACTGTCTTTTTTTCCCCTCTTTGTAATTATTTTC
CCTGAAAATGTTCCTGGAAGCTCAACTTACATCATTTTAGGGGCCTCGAA
TTCATCCAAGTTTTTTTTCTGTAGGATTTCCTACAAAAAACTAAAAGTCC
CAAGACATTTTGACGTTCAACAAACAGCCGCTTTCAACTTTATCTACCGT
CTTTATTGTTCGAAATCTCTTGCACTGCGATCCTTTTGCCACCTTTCCTC
TTCTTTTCCTCTTTCTTCAAACTCGCCCTTTTTTACCCACAGTTTTAATT
TATTTTAAAGAAAGAAATGTTGTAAATGCCTAATGGGGCATTATTCTTTT
TCGCCGTAATGAAACCAACTGCACCTAAGATAGTGATTCCACTGAAGTAC
AGAAAACTAGTAAAGAATCTCAATTAGTATTATTGCATTAATTTTCAAAA
GATTAACTTTTGTGTTTTTGCGAATTTCGGCGAAATTGCCGACTCAGGGA
ATTAAATCCACGCATTCTGTAACTCTTTTTTTTCGAGGGAAAATAACACT
CGAAATCTTCTTTACGGAAAATTGGGATCTTTTTTAGCTGATTTTTAGTC
CAGAAATTTTAGGCATTACTAACGGGCAAAATAATCTTTCTCGTTAAAAT
CATCAAGACAATCCCTAAAAATGATGCTGAAAAATATTTCTCTTTGAATT
TCCTGACTGACTTAGAGAAGTCTCTAAATACGGGAATATTGCTTTCTTTT
AAAAAGAAAAACTGTTTTTATAATGACTCTCTTGGTTAGGGGTTAGTTCC
AAGAATCTTTCTTAGCTTTTATCCAACAAGACTAGAAAAGAAAAAATAAT
ATTTAAACAGCGGTTTTGATCTGAATATTCTTTCCCAAAAAATTTGTTCT
ATATTTAGGGTACTATTAGGCAGGTGCCTCAAAAGAAATATGTAGATGTT
AATTTTTTATTCTCGCCCCCTCTTTTTCATATCATTTCTTCCACATTTAC
TTTTCACTTAAAAATATATTTGGAAAAAGTCATATCAGTACGAAAAGATT
AATTTTATACATTTAGAATGCGTACACTTTACTTTCCGAAAAAAAAACCC
ATGGGGCCTAAAAATAGAACAAAAGATACAATGCTAGTAAAACACCCAAA
AGCCTGGAGCTATCCTATTATGTAGATTTTCACATCCTCGAATTAAAAAA
CACTTTCAAAATATTATAAACCTTTTTTACCCTGGTGATTTTTAGAAAAC
TAAAACTTTGTACCTTTCCTATCTTCCAAGCTTTTCAATTCTTTCATGCA
GAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATCACGCGCGGACC
GTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTATGCCCAGTTCTT
CAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATTTGACCAGCAAT
ATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAACGGTTGCTACAA
CTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTGTACAAGGAAAA
TGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCATGATGTACGTT
TTCCTTGATCATATTTTTAGTTTTAGTTGAATTTCGGTTTCTGGAAAGAG
TACCACTTCCAGACTAGAATCCAGTTGTATTCTTAGAATTAAGAGTAGAT
GTACAATCAAATTGTAAGACAAAGTAGAATACAAGCTTCACCCCCTCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTCCCCCCCGTTTATTGAAATTTCAAAAATTT
TCCAACCCCCCCGTTTATTCCAACCCCCCGTTTATTTGGCACCTAAGAGT
AAGTCCATGATTGTATAAACGTCATCGATCAAAGGTGTAACCTTTTGTTT
TGGTGCTTTATAAATTTTTACGATTAAATCTTAAACCTGCTAGCCTAGAA
GAGGACTAGTAAGTACTCTTAGAATGAAAATAAGAATTGTATTCTGAGGG
AATTCTTAGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAA
TAAATCATAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAAC
AAAAGAATTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTT
TGTTTAAAGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAA
TGGGATTGGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTT
GATTATTTTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGAC
GATATTTTGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAA
TCAAGGTAGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATAT
CCGATTCACCGTCACAAACACAGCACCATCAAACTCTCCATACTCATAAA
GCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCA
TTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAA
AGAATCTCTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGA
ATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTG
GTATGTATTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAG
ATTTTCAATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTA
ACAATTTTTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTA
AAAGCGTATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCT
TCACTCTTAATTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAA
TAACCTTTCTGTTATCAAAATTCATTACATNTTCTGAGGGAATTCTTAGT
TTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAATAAATCATAG
TAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAACAAAAGAATTT
CTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTTTGTTTAAAGA
TAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAATGGGATTGGG
GAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTTGATTATTTTC
AGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGACGATATTTTGG
CAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAATCAAGGTAGT
TTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATATCCGATTCACC
GTCACAAACACAGCACCATCAAACTCTCCATACTCATAAAGCGAAAGTAC
ATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCATTGCATGCAT
GATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAAAGAATCTCTC
TTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGAATTGTCGTCA
GAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTGGTATGTATTA
CTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAGATTTTCAATT
TTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTAACAATTTTTT
TAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTAAAAGCGTATG
AGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCTTCACTCTTAA
TTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAATAACCTTTCT
GTTATCAAAATTCATTACATTATGAAATTCCTGATCGAACTTGATCCACA
TATTTCTTTTTATTTTCAGGTGTTTATTACACGACTTCAATGTTTGAAAT
TGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATCGCA
ACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTCGCT
CGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTACATTGA
TCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAACCA
CCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCGGCA
CTTGGTAACGGGAACGGAGAAATGTCATATTTTCCAAAATCGACGCTCCA
TCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTGTCA
ACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTGTCG
GCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGAAGA
GCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAGATC
GCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTTACC
ATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGAATG
CTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCTGTT
GTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAAGAA
AGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTACAG
GAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTATAA
AAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAATGGT
TTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATAATG
CTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTCAAA
TCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAATGG
CTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCGTCT
CTTTGCNAATAATTAACATAATATATGCATGGATCGTGCATCGTGCATCG
TGAATCGTTGGATCGCGCATCGTAAATAGACGATATCGCGTTTAGATAAA
TGCAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGTCGA
TTATATAATAATCTGGAATAGATTATAATTCCCTTGAGGGTCCCCGAGAA
ACCAGAATGCATTGCATTTATCTAAACGCGATATCGTCTATTACTCTGGT
ACATCTTTTTGTATTTTTCGTGTTGAGGACGGCAGCCTTGAGAAATGAGT
ACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAAATT
CGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATACAGTT
TTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATAAAA
AACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTGTAT
GACTTCAATTTTCAATTCTTTTACTGGACATAGATATGCATTGCAAAAAC
AAGTCAGGCTCGGATACAGAGGGAGGCTATAACCAATGGAGGAGAGTGCA
CTTTATCATCGTATTACCTTATATGGAAACTAATTACTCTCCACGAATAA
GATAGCCTACCTCCTGTATCCGACACTGNATGACTTCAATTTTCAATTCC
TTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTTGAT
TTTAAATTTATACGATTTGATACATAACATATTATTCTATATGATACGGT
AGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTCACAAAAATTTGATAAA
TTAAAGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAAACT
GCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGACAG
CTTAAATTTATAATATAAATAAACAAATTTTTAATTAACTGGAATTTGGA
TTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGATTGC
AAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCGTGA
CTTAAAAAAGACATAATTTAAATTAGCACTATTTATTTATTTATTTATTG
AACATTTGTCAATATTTTGCTTTAATTTATTGTTTTTATAGTAATAAGTG
TCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTCGTG
AGTCCTGGGACGATGACCAATTTACATGTTTTTTTATAAGCATAAAAAAT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000521XLOC_000521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000885-exon-sc0000005-1575043694:1379217..1379694TCONS_00000885-exon-sc0000005-1575043694:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1377991..1378130TCONS_00000885-exon-sc0000005-1575043694:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1377278..1377322TCONS_00000885-exon-sc0000005-1575043694:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1376937..1377046TCONS_00000885-exon-sc0000005-1575043694:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1375252..1375543TCONS_00000885-exon-sc0000005-1575043694:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1372505..1372763TCONS_00000885-exon-sc0000005-1575043694:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1369793..1372175TCONS_00000885-exon-sc0000005-1575043694:1369793..1372175Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1379217..1379694TCONS_00000885-exon-sc0000005-1510915933:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1377991..1378130TCONS_00000885-exon-sc0000005-1510915933:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1377278..1377322TCONS_00000885-exon-sc0000005-1510915933:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1376937..1377046TCONS_00000885-exon-sc0000005-1510915933:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1375252..1375543TCONS_00000885-exon-sc0000005-1510915933:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1372505..1372763TCONS_00000885-exon-sc0000005-1510915933:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1369793..1372175TCONS_00000885-exon-sc0000005-1510915933:1369793..1372175Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1379217..1379694TCONS_00000885-exon-sc0000005-1491911889:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1377991..1378130TCONS_00000885-exon-sc0000005-1491911889:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1377278..1377322TCONS_00000885-exon-sc0000005-1491911889:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1376937..1377046TCONS_00000885-exon-sc0000005-1491911889:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1375252..1375543TCONS_00000885-exon-sc0000005-1491911889:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1372505..1372763TCONS_00000885-exon-sc0000005-1491911889:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1369793..1372175TCONS_00000885-exon-sc0000005-1491911889:1369793..1372175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1369793..1379694 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.128987	0	0	3.64829e-06	2.17084	0.635988	0.860085	0.860786	1.40699	0.569592	2.96783e-10	0	1.5837e-10	0.206467	1.31699e-09	0.802117	2.82272	1.28076	2.59719e-05	0	0	0.918277	0.719097	0	0.122028	0	0
Blast
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BLAST of TCONS_00000885 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 207.608 bits (527), Expect = 7.155e-57
Identity = 144/498 (28.92%), Postives = 245/498 (49.20%), Query Frame = 1 
Query:  496 EGEQRLLKYL-KNFSVNSRPVNISSTAVYVNVTMEIVRLDAVSEKGQSVRMKLHINYLWRNPYLVWNPLNYKGVSEVILPEGEIWIPPIRLFNEASKTQGEYNEDNHARTVLLTNDGNCSLTYAQFFKSTCEIDVSDFPFDQQYCDMTFGSWSMDERLLQLRAVKEEAISEQLYKENGEWHLTEATLKTHDVRYPIHRHKHSTIKLSILIKRKYIFFIMNLVVPCALIACMIFLVFVLPAKSGERISLGITVMLSMAIFQELSSEKLPSSSDNYPLLGVYYTTSMFEIGIALVMNCFILNVYYRNYE---MQPWMRRLLFDKLARLVRIDIP-----HTRTQHYIDRMSTG--QFRELNPXXXXXXXXXXXXXXXIDGESAL-----GNGNGEMSYFPKSTLH-REDTQTIQRKTKKFSVNQNGSSSDLTYTKSNLSAKISLSLSSDPSTRIEERKLLGEDWKTAARILDR-CMLAIAISVGVISALTIFMQAARFRE 1935
            E +++L K L KN++   RPV   S  + V  ++ ++++  V EK Q +   + +   W + YL WN   Y GV  V  P+G+IW P I L+N A +    ++   H   VL+ + G+C       FKS+C IDV  FPFD Q+C + FGSWS     L L+ ++E  IS   Y  NGEW L     K  +  Y   +  +  +  ++ ++R+ +++ +NL++PC LI+ +  LVF+LPA SGE+ISLGITV+LS+ +F  L +E +P++SD+ PL+  Y+ ++M  +G+++V+   +L  ++ + +   M  W R +L +  A  +R+  P         QH   R S    +   + P   +  N        +DG   +     G   G M+  P    H     Q  +       + +     ++ Y  +    +             +E + +  +WK AA ++DR C++A ++   +I  + I M A  F E
Sbjct:   24 EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADE---RFDATFHT-NVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ-MQEADISG--YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILE-----EVRYIANRFRCQ-------------DESEAVCSEWKFAACVVDRLCLMAFSV-FTIICTIGILMSAPNFVE 495
The following BLAST results are available for this feature:
BLAST of TCONS_00000885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA77.155e-5728.92Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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