TCONS_00009447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009447
Unique NameTCONS_00009447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009447 ID=TCONS_00009447|Name=TCONS_00009447|organism=Clytia hemisphaerica|type=transcript|length=2126bp
GCCGAGGTAGGTCAATGGAAgtcTTCTAGATAAAAAACATAACCAACATG
GCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAACAATGAAAT
CAAACCGAGAtttgagaaattgaaaaatatagatCTATTCGTCATCGATA
ACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTGGAA
AATAAATACAGCATTTTGAATGAGACAAAGGAGCTTGGTTTCCAGCATAA
CATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCA
CGCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCC
GAATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTAT
CCCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTA
TGGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAG
AAGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCT
AAAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCA
TCATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTA
TCTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGG
TCAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATC
TGATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAG
CAATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGC
TACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATG
CTTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAA
GTTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATAT
CACCCAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATG
GTGCTAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAAT
GTGGGCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAA
AACAATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAGAT
TGACCCGTTTGTTTGGCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAG
CTGATGAAACAGCAAATGTTGGATGATTACAAGAACAACAAGAAAGAGGA
ATACCACAGTCCTATTGGATTAATCACATTGTTTGATAAAGCTGGAGGTA
AAAAGACTCCAGCAATGTTGAAAGCACTTCAAgagTATGAAGTCCAATCG
TTGCATATCCAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTG
GGATTCTTCAGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCT
ATAACGCCTTCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACT
CAACAAGCACTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTG
GGATGAGTTTTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAG
TTGAAGACGCAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTA
CCAGCAATGCAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCT
TTTCCACGATCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGAT
GCATAGACTCTTAgaattaaattattttgttcTAACAATTATTATTTATT
TCGAATTGTATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAA
ATCTTGCCACCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatatttta
ttaggaAACTCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTG
ACGCACTTAAGGTTTATTATGCCCCTGATACACatcttatttataaaaaa
tccGTACATATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAAT
ATAAACATCCTTAAAAACGAAAAACT
Run BLAST on NCBI

transcript from alignment at sc0000095:112719..119729+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009447 ID=TCONS_00009447|Name=TCONS_00009447|organism=Clytia hemisphaerica|type=transcript|length=7011bp|location=Sequence derived from alignment at sc0000095:112719..119729+ (Clytia hemisphaerica)
GCCGAGGTAGGTCAATGGAAGTAAGTAAGTCTTGAAAATATCTTTACAAC TATGTAATAAAGTGCATTGGTATGAATTTAATTTGACAGAtggtcaaaaa agttttatacaTGGAATTGAATTTAATAGCAAGTAGCACCGGGATTTTTC TTTCCATTTCTTAGTGAGTTTTACTTTGATgaattctgaaaaatagaagc cttttaGATGTTCTGACGTAAATTCACGCAAAGTGGAATGGGCGTTACTG CGTAGAAAAAAAGCCGTGACTTCTAGTATAATAATTTCGTTGGaaggctt gaaaatgaaatttggcaGGAATGCAGGTTCTTAGTATGTTCGTTTATTTC TTTATAGAAATGCTGACAAATTTTTACAGATCCGTCTCTTTCCACAAAGA TTTCTACCAAAATATTCTGTCCAGGAAATATCCAGTCGGAAAGATGTCCG TTAGTATAAAATCTGTTTGGGAAACATTCGTTAGGAAAAGTTTCCGGGta taatttgagaaaaattcgtAAAAGGTAATACTCTTCGGTaaaagtcccgg ggggggggttNTTTTTTGGTCAAATATTGCCATTAAATAAGCAAATATCT GTAAGGAAAGTGTACGAAATAATTTAGATTTTGTGGTAATTCATTTATGA CGGTTGgcggaaatttttcaattttggttagAAANTATAAAATCTGTTTG GGAAACATTCGTTAGGAAAAGTTTCCGGGtataatttgagaaaaattcgt AAAAGGTAATACTCTTCGGTaaaagtcccggggggggggttagtTAGgaa aaattgggtacggggacgtgcggCTCGTCAGAGTCTtcttttaggctctg aagatatctgacagggtccaaaatttactgattttcAAGCCCATCCCgca taaaatgattttgaagttTCGCTTAGGCTCATCAACAAAATATGTTGGAA AAAAACTCTCAAGCCCCCTACTAATCtgaatatttcttttaaaaactttc ctGTCTATTCTGGTCTTGACAGTTTGAACACTTATAACCAGGATATTGTT CCAGCAAATGATGATTGGTTTATTTTATAAACAAACGCAGGCGTTCagct ttattttcctttttaaaagaGAAGTTAAGGTTACAAGGTCGTTGATcact taactttttttggtgtcGCCGGAGAATTCACACGGCtcgatttgaaaaaa ttcaactttgtgtGCAGAGCCTCTCTTCTATTATTCTTTCTGAAGAAGCC AATCAGCGAGAAGTTAAACATACTGGCTGTGTCTTTGTTTTCATtatgtt tgttttgaattttttacgcgcaacctttttcttattttcaatgGAAGAAT AACAGCGCTCAGCGACCAAATCGCTCGAGCCATGTACGTTGTTGGGCGAC CAAATAAGCTAAGTGGACAACGACCTTAAATATAGAGATAAAAATTGAGA TATAAATGAGATTGTCAAATGGTTCGGTTAAGAGAGCCCATGCaatgatt ttgttgaaaataaaataaaacttgttGTCTTTCCTTATTACTTAGATTgg ctaaaatagattttttcggAGGTAAATTAATTTGACGGATATGggtggaa aaaattaaattcggTTGAAGTTTTAATGGGTGGATAAAGTATTTTTGGTC AAATATTGCCATTAAATAAGCAAAATATCTGTAAGGAAAGTGTACGAAAT AATTTAGATTTTGTGGTAATTCATTTATGACGGTTGgcggaaatttttca attttggttagAAAGTGTTAGAACAAATCTGCAAATTTATTCTATCGAAA GTGTGCGCGTGTTTACATTTGCCGTaatttggaatttgatcataaGAGAC TcaattttaatagcttttccattgtatttttcGCTAAATAACTTTTAAAG GAATTATCTTTTTAGTGTGATTACGCAAAACGTGATTCCCTCATGTTCAA AACCTTAAATCTCAAATAAAAGGAATACTACAAGCAATTACTAATGACAA GCATGTGTAAACGCGTCCATTGTTTATCATAAGTGTAACAGTTTAGTATA TTGCCTAGAGGGCCCTAGAGAGTACTAAAAGATTATCTAGTTCTGTATAA AAAGTAGTGTCGGATTTACGATAGataaaaacttgtaaaaagCAGGTGAG ATGTCAAAATGTTGATTAAAAACTTCTTCGTTTGTGTACAATGAAATGTT ATAACTGTCATTTTTGTTTAACTATCAAGAAACAAGAGGCATCTCCTTTG TTTCTTGGGACTACAAAGAATCGAAATACAGAAAAATTCGGCTTATCTTG CATGCAGCTGTCAGATTTGCGATTTAACTTGGATCTACTATAAAATGATA TGACTATATCATCCATGtcagtgatacaggggtgtaccCGTTTTCGAGAA tttgatcttaattttttttctaggtcTTCTAGATAAAAAACATAACCAAC ATGGCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAACAATGA AATCAAACCGAGAtttgagaaattgaaaaatatagatCTATTCGTCATCG ATAACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTG GAAAATAAATACAGCATTTTGAATGAGGTGAGGGAAACTTCAGTAAGAGT TGAATAAAAGTCGTCGAAAAGCAAGAGTTTTCAGAATCATTGTGGTCCAT TTTTTGGGCTTGttttataatttctatcaaaaatATCGGAAAGAAAAGCG TGCCTGGTCTATATTTTTTGTGACTAAGTGTGTGTGGTTACCGTTTACTT TGATCATCCGCTTATGATGCTATTGAATTGTATGTAAATAAACTTTTTAG ATTTCCTAAAAGCCTCAAGAACTATATAAATTTGATCAAAACctattttc tttcctttcaatcATCCATTCGGATTAAAGCTATTTAAGAAACAAATTTG AATCTATATATTTTATACTACAGACAAAGGAGCTTGGTTTCCAGCATAAC ATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCAC GCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCCG AATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTATC CCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTAT GGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAGA AGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCTA AAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCAT CATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTAT CTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGGT CAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATCT GATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAGC AATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGCT ACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATGC TTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAAG TTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATATC ACCCAGGTATTTATAAAATCTTCCTTTTGACATCCCTGTATGAATACTTT TTTGTCAGAATTTTCTCTCATTGTTAAAACAATTACATGGTAATTATAAC TGAACGAAAAGTACTTCGGGTATTAGAAACGATTCACTTATTTTCATAAG CCAAAGCCATTTACTTCTCAAACGATGGGAAAAAATTGTCAACAACAGAG GCAAACAGCCATTCTATTTCCGattttaaaacttcaaattcaatcttttc aaGAAGACATATAGTACAGTCACTGACAATGAGAATCACCCCTCTTTTTT CAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATGGTGC TAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAATGTGG GCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAAAACA ATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAGGTTTGT AATCATTCTTTTCACTTTGTTAAAAGTCTCTCGCAAATGACTCTAAAGAT GATGAGcaaaatcatattttttaataattcttTTGTACATTTTCGTTTTC AAACCACCCACcctaaaaaatgcaaaaatttaaaGTTGAATTAAACGAAA ACGATTGATACCATCGGACAGAGGCATGAATATCTGGGCAAGAGAAGTAC TATTATAAGGTTTGCCCCCCATCAGTATGTACAACTATGTTTGAAAAGTA TATACTGAGGTATTCTCAAAACCAGCTTTTACTACCACGACCATACTTAG AGTTTCAGATGCCGGAGAAAATATAATCATTGTAAATattattctttcat tttacaCAATAGATTGACCCGTTTGTTTGGCGAGGATCCTAATTTCACTG AAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTGGATGATTACAAGAAC AACAAGAAAGAGGAATACCACAGTCCTATTGGATTAATCACATTGTTTGA TAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGAAAGCACTTCAAgagg tttgtttatttttactaTTCGTCAATTCTTTACACACTTTATAGAATTGA CTTCGttttaatacacccctgtgtcacaagaCTCGAGACTGGGACTCCAG CCGCACTGGAAAaaagactttgatttcatccccattcgaaattcaatgtt tataaATTGTACTCtgaaaccatccccactggatttttaaccttggaaca atagaatattATCCCCACTAGGGGTGTATTAATTGAGTCATTGAGGCACG ACAtaaaaaacttttcataaattacatcacgTGCAatgcttacctcgttt tcaaaatgttaCTATGGNCATTCTTTTCACTTTGTTAAAAGTCTCTCGCA AATGACTCTAAAGATGATGAGcaaaatcatattttttaataattcttTTG TACATTTTCGTTTTCAAACCACCCACcctaaaaaatgcaaaaatttaaaG TTGAATTAAACGAAAACGATTGATACCATCGGACAGAGGCATGAATATCT GGGCAAGAGAAGTACTATTATAAGGTTTGCCCCCCATCAGTATGTACAAC TATGTTTGAAAAGTATATACTGAGGTATTCTCAAAACCAGCTTTTACTAC CACGACCATACTTAGAGTTTCAGATGCCGGAGAAAATATAATCATTGTAA ATattattctttcattttacaCAATAGATTGACCCGTTTGTTTGGCGAGG ATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTG GATGATTACAAGAACAACAAGAAAGAGGAATACCACAGTCCTATTGGATT AATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGA AAGCACTTCAAgaggtttgtttatttttactaTTCGTCAATTCTTTACAC ACTTTATAGAATTGACTTCGttttaatacacccctgtgtcacaagaCTCG AGACTGGGACTCCAGCCGCACTGGAAAaaagactttgatttcatccccat tcgaaattcaatgtttataaATTGTACTCtgaaaccatccccactggatt tttaaccttggaacaatagaatattATCCCCACTAGGGGTGTATTAATTG AGTCATTGAGGCACGACAtaaaaaacttttcataaattacatcacgTGCA atgcttacctcgttttcaaaatgttaCTATGGTAATTGTTTCTCAGATGA GTCCGAAGAAGTTTATTTAATATACAAAAATAACACCTTAACTCTCGAAA GttttaatcaccttggtaatggtgACAAATAAAGGTAGTCGTTGAACTCA Aaatgatttatgaaaaggcctattctttaaagggacataaaagtactttc gaaatttgtaaacaaaccgtatgcaacAACAACCATATATGACAAGACAA AACACGTCGTCGTTGTAACATAATCAGACACCAAGTGCAATTCCtactaa aaaatctttttaatttctAGTATGAAGTCCAATCGTTGCATATCCAAGAG CTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTTCAGACGG CAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCCTTCATGA ACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGCACTTCAA GCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGTTTTCCAT CTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGACGCAGAAG CTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAATGCAAGAT GAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACGATCCACA TAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGACTCTTAga attaaattattttgttcTAACAATTATTATTTATTTCGAATTGTATTAAA GTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCCACCAAAA GGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAACTCGACT CCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTTAAGGTTT ATTATGCCCCTGATACACatcttatttataaaaaatccGTACATATAATT TATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACATCCTTAAA AACGAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005296XLOC_005296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009447-exon-sc0000095-1491911889:112719..112738TCONS_00009447-exon-sc0000095-1491911889:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:112719..112738TCONS_00009447-exon-sc0000095-1510915933:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:112719..112738TCONS_00009447-exon-sc0000095-1575043694:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:115142..115345TCONS_00009447-exon-sc0000095-1491911889:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:115142..115345TCONS_00009447-exon-sc0000095-1510915933:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:115142..115345TCONS_00009447-exon-sc0000095-1575043694:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:115692..116474TCONS_00009447-exon-sc0000095-1491911889:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:115692..116474TCONS_00009447-exon-sc0000095-1510915933:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:115692..116474TCONS_00009447-exon-sc0000095-1575043694:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:116772..116962TCONS_00009447-exon-sc0000095-1491911889:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:116772..116962TCONS_00009447-exon-sc0000095-1510915933:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:116772..116962TCONS_00009447-exon-sc0000095-1575043694:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:118196..118382TCONS_00009447-exon-sc0000095-1491911889:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:118196..118382TCONS_00009447-exon-sc0000095-1510915933:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:118196..118382TCONS_00009447-exon-sc0000095-1575043694:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:118989..119729TCONS_00009447-exon-sc0000095-1491911889:118989..119729Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:118989..119729TCONS_00009447-exon-sc0000095-1510915933:118989..119729Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:118989..119729TCONS_00009447-exon-sc0000095-1575043694:118989..119729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:112719..119729 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.0740964 tpm) - - (496.198 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
496.198 460.571 343.131 262.549 1.85102 1.64349 2.31591 2.6062 4.31733 3.56085 2.08125 2.39936 11.6704 8.19349 3.54105 7.01099 0.0740964 0.166133 41.5561 55.0169 0.909588 0.336022 197.049 163.115 0.175519 0.511317 15.1752 18.4027 94.3424 102.657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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