TCONS_00009438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009438
Unique NameTCONS_00009438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=510bp
AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA
AAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGT
GCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAG
TATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCA
CAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATC
AAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAA
AAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCG
GTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTA
CTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCC
TGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTT
TCAAGTATGG
Run BLAST on NCBI

protein sequence of TCONS_00009438-protein

>TCONS_00009438-protein ID=TCONS_00009438-protein|Name=TCONS_00009438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
GVTMLTFVANKCGRLTKVKKVEQFIMSYGGLRGAVAFCLAMLIKEDDTPS
IDGKPSSQEFKQTIVTTTISVVLFTCFIQGTTIKKLVDILGVKKSFKRDK
SMAETVNDRMLGYMVAGIEEIIGVHGHGFWRNLLELFNKKYLRRWLERDP
DNPLDDSLLAHQRRIAFKY
Run BLAST on NCBI

transcript from alignment at sc0000095:22535..25017+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=2483bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica)
AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA
AAGTTAAAAAAGTCGAGCAGTTCATCATGGTAAGACTCCTTCCTGTTAAC
AATTTTAAatctctagtttagacggtcaGCTTACTGCATAACTTACTATC
CACCCTCATCTTGGCGAAAGTCGCCAGAAAGGTAGCCAACACTACCCTAC
catgtgatttttttaatcgttttgTTGGTCTGTAATGTTTTACTATGATT
GATAACGTTAAATTTATACACTGTGGGAGTACGTCAATGTAATGGCTACA
GACTTTCGAGTTCATTCGAACTCGAAGACTTTTATTTGCAGCGCAGTGTA
CTGGAAGCTTTTTCTGTTTGATCATATGAAAAAGATCATTTCCTATTGTA
TTTTTCAACTTCGTTCAATcataaatcaaattttgattgtGATTCATTTA
GTAAAATTTAGTGCTCATGATGGTTATACTTGAAAAGCTTTTTGTTGAAT
TGATAAATTTTGTCAGCTTTTCTTCATTAAACCTATAGAATAGCTACTTT
TGACACAGTTTCTACTCCCTATATTTAGCGGGGGAAGGGGGAGGCTGTTG
AATTTTAATGAAACCCAGACGAAGGGTATGTGTGCTGTAACTATGTTGAA
TCATCTATCTATATTTATATTCATAGAGTTATGGTGGTCTGCGAGGTGCA
GTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGTAT
TGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCACAA
CAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGTTTGTGTTATTTGA
TTATATATTATGTGTATATTCACTATGTAATCACATTGCTATTGTTAATA
ATTCCCAATCCTTTCAAAGGGAACAAGTGAGTGGAGGATTCATCAAACAA
TGGCCTCTCAATTTTATTCGGGCCCTGAATGTCTTGAATTTTGCAGCATT
TTGAATAGAGTCAGAGATATTTCACTTTGACCTAAGCTATAATAACTTTG
CCAGAACctgagaaaatacaaaaatgatgAACACGTTTTTTAAAACATCA
TGGGCAGTCCCGTATTTCCTTTTCTCTTGATCTGGAGCCGCACCTAAAAT
CACGAAATTAGAATAAACTCTGCAGCGATTATTGAAGAAATACAGCACCT
CCTATTCGAACGAATTTCTTGATCTTTATAAAGGGGTCAAGAGTGGCATA
TTTGATTTTTAggatttgttgttttcttttataGGGTACAACAATCAAGA
AACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAAAGT
ATGGCTGAAACAGTCAACGATCGTGTAAGTTTAATTGAATGTTTCCTTCT
GTTTGGACAAAAATGGTTGCCAGCATTTCAATGGAAGATATATAACCtgt
aaagttttgattttgaaatcatttttccaCTTTGAGGCAAATGACCTGTT
ACCAAGGTTCGGTCTAAATTGAATCCAAACGAAGttttcttttagatttt
ttaatacCATTTTTAAGCACACTTTAAATTGAGCATTTTAGGCTTTTTGA
AAAAGTCTACAGAAGCCATTGTAAGGCTTTATGAGAGAGGAAGTGCAAAA
AGGATAGAGCGTTGATCAATTTATGAAATGTACTCTCGCGATAATTGATT
TCTGAGGTCACTGAGGTTGTAAGCCCCGGGTAGTacacaaaattaaattt
aactAAAGTCTTTAAATTTTACTTCCTTGTTACAGATGCTTGGGTACATG
GTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAG
GGTAAGGAAACTCGCCATTATTGTATACTTTTTAACGGTACATTCTGTTT
TATTGAGACGTTACATTCTCTTCTTGGTGgccttattcatgatatgcacc
attgcaccatgtcttccacggacccagcAGCTGATTGGTAGAAAGTGACG
TATTTGCTGATTTTACTtgacttgcaaccaatcagctgttggttccgtga
tgtaatgtcggaagacattgcaatggtgcatatgaTGAATTCATGTTTAT
TTTCATACAATTTAAAGAAGCCCTATACCTGTGCTTTATGTCTCAAATAC
TTTTACTCTTTTTTCTGACTTGCAAGACGTGAATTGAAAagcccggcgaa
tctttaataATATGAATTGAATCCTATCCGAGAAGTGACCGAATTGGTTT
CTTCGATAAATTTAATGTACCTTCTGAATTAATATGTAGAATATTCAGAA
TTCCTTGAATGACAGCTTGTGCGATGGGATATTCGATCTTTATGCGTGCT
TTTATTTCCTTTAATAGAATTTACTGGAGCTGTTCAATAAGAAGTATTTA
CGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTT
AGCGCACCAACGACGCATCGCTTTCAAGTATGG

Coding sequence (CDS) from alignment at sc0000095:22535..25017+

>TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=CDS|length=2535bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica)
GGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCAA
AGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGTG
CAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGT
ATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCAC
AACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATCA
AGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAA
AGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCGG
TATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTAC
TGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCCT
GATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTTT
CAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGAC
TGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTG
CGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATAC
GCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCG
TTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACA
ACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCG
AGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGG
TTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGG
AATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAG
AGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCA
TCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGT
GGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGG
TGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAG
ATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAG
ACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACA
GGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTT
TCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGG
TACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTT
TTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGC
TGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAA
CGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAA
TAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGA
GTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATC
AAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTT
CAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTT
TCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAG
AAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTAT
GCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGAC
ATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGT
CGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGC
GCACCAACGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTG
TGGCTAATAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTC
ATCATGAGTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCAT
GTTGATCAAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTC
AGGAGTTCAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTC
ACTTGTTTCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGG
TGTAAAGAAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACG
ATCGTATGCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTT
CATGGACATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTA
TTTACGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTT
TGTTAGCGCACCAACGACGCATCGCTTTCAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005293XLOC_005293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009438-exon-sc0000095-1491911889:22535..22613TCONS_00009438-exon-sc0000095-1491911889:22535..22613Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1510915933:22535..22613TCONS_00009438-exon-sc0000095-1510915933:22535..22613Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1575043694:22535..22613TCONS_00009438-exon-sc0000095-1575043694:22535..22613Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1491911889:23211..23369TCONS_00009438-exon-sc0000095-1491911889:23211..23369Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1510915933:23211..23369TCONS_00009438-exon-sc0000095-1510915933:23211..23369Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1575043694:23211..23369TCONS_00009438-exon-sc0000095-1575043694:23211..23369Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1491911889:23819..23908TCONS_00009438-exon-sc0000095-1491911889:23819..23908Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1510915933:23819..23908TCONS_00009438-exon-sc0000095-1510915933:23819..23908Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1575043694:23819..23908TCONS_00009438-exon-sc0000095-1575043694:23819..23908Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1491911889:24320..24385TCONS_00009438-exon-sc0000095-1491911889:24320..24385Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1510915933:24320..24385TCONS_00009438-exon-sc0000095-1510915933:24320..24385Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1575043694:24320..24385TCONS_00009438-exon-sc0000095-1575043694:24320..24385Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1491911889:24902..25017TCONS_00009438-exon-sc0000095-1491911889:24902..25017Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1510915933:24902..25017TCONS_00009438-exon-sc0000095-1510915933:24902..25017Clytia hemisphaericaexon
TCONS_00009438-exon-sc0000095-1575043694:24902..25017TCONS_00009438-exon-sc0000095-1575043694:24902..25017Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009438-proteinTCONS_00009438-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:22535..25017 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (3.1047 tpm) - - (42.2805 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48264	4.71246	13.212	16.7122	42.2805	27.5072	33.1863	32.2035	27.2147	31.8643	19.2257	17.8191	19.2053	18.6424	10.4408	12.2101	20.2623	20.7682	13.7824	19.2734	18.1196	16.3422	10.1357	13.2694	22.2724	21.007	5.33339	3.1047	9.28839	8.26381
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006153Cation/H_exchanger
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0015299solute:proton antiporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006812 cation transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015299 solute:proton antiporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50100150200250300350400450500Expect = 2.09e-21 / Id = 40.41SequenceSL9A1
Match NameE-valueIdentityDescription
SL9A12.086e-2140.41Sodium/hydrogen exchanger 1 OS=Homo sapiens GN=SLC... [more]
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