Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=510bp AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA AAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGT GCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAG TATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCA CAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATC AAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAA AAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCG GTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTA CTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCC TGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTT TCAAGTATGG Run BLAST on NCBI protein sequence of TCONS_00009438-protein >TCONS_00009438-protein ID=TCONS_00009438-protein|Name=TCONS_00009438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
GVTMLTFVANKCGRLTKVKKVEQFIMSYGGLRGAVAFCLAMLIKEDDTPS IDGKPSSQEFKQTIVTTTISVVLFTCFIQGTTIKKLVDILGVKKSFKRDK SMAETVNDRMLGYMVAGIEEIIGVHGHGFWRNLLELFNKKYLRRWLERDP DNPLDDSLLAHQRRIAFKY Run BLAST on NCBI transcript from alignment at sc0000095:22535..25017+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=2483bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica) AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA
AAGTTAAAAAAGTCGAGCAGTTCATCATGGTAAGACTCCTTCCTGTTAAC
AATTTTAAatctctagtttagacggtcaGCTTACTGCATAACTTACTATC
CACCCTCATCTTGGCGAAAGTCGCCAGAAAGGTAGCCAACACTACCCTAC
catgtgatttttttaatcgttttgTTGGTCTGTAATGTTTTACTATGATT
GATAACGTTAAATTTATACACTGTGGGAGTACGTCAATGTAATGGCTACA
GACTTTCGAGTTCATTCGAACTCGAAGACTTTTATTTGCAGCGCAGTGTA
CTGGAAGCTTTTTCTGTTTGATCATATGAAAAAGATCATTTCCTATTGTA
TTTTTCAACTTCGTTCAATcataaatcaaattttgattgtGATTCATTTA
GTAAAATTTAGTGCTCATGATGGTTATACTTGAAAAGCTTTTTGTTGAAT
TGATAAATTTTGTCAGCTTTTCTTCATTAAACCTATAGAATAGCTACTTT
TGACACAGTTTCTACTCCCTATATTTAGCGGGGGAAGGGGGAGGCTGTTG
AATTTTAATGAAACCCAGACGAAGGGTATGTGTGCTGTAACTATGTTGAA
TCATCTATCTATATTTATATTCATAGAGTTATGGTGGTCTGCGAGGTGCA
GTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGTAT
TGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCACAA
CAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGTTTGTGTTATTTGA
TTATATATTATGTGTATATTCACTATGTAATCACATTGCTATTGTTAATA
ATTCCCAATCCTTTCAAAGGGAACAAGTGAGTGGAGGATTCATCAAACAA
TGGCCTCTCAATTTTATTCGGGCCCTGAATGTCTTGAATTTTGCAGCATT
TTGAATAGAGTCAGAGATATTTCACTTTGACCTAAGCTATAATAACTTTG
CCAGAACctgagaaaatacaaaaatgatgAACACGTTTTTTAAAACATCA
TGGGCAGTCCCGTATTTCCTTTTCTCTTGATCTGGAGCCGCACCTAAAAT
CACGAAATTAGAATAAACTCTGCAGCGATTATTGAAGAAATACAGCACCT
CCTATTCGAACGAATTTCTTGATCTTTATAAAGGGGTCAAGAGTGGCATA
TTTGATTTTTAggatttgttgttttcttttataGGGTACAACAATCAAGA
AACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAAAGT
ATGGCTGAAACAGTCAACGATCGTGTAAGTTTAATTGAATGTTTCCTTCT
GTTTGGACAAAAATGGTTGCCAGCATTTCAATGGAAGATATATAACCtgt
aaagttttgattttgaaatcatttttccaCTTTGAGGCAAATGACCTGTT
ACCAAGGTTCGGTCTAAATTGAATCCAAACGAAGttttcttttagatttt
ttaatacCATTTTTAAGCACACTTTAAATTGAGCATTTTAGGCTTTTTGA
AAAAGTCTACAGAAGCCATTGTAAGGCTTTATGAGAGAGGAAGTGCAAAA
AGGATAGAGCGTTGATCAATTTATGAAATGTACTCTCGCGATAATTGATT
TCTGAGGTCACTGAGGTTGTAAGCCCCGGGTAGTacacaaaattaaattt
aactAAAGTCTTTAAATTTTACTTCCTTGTTACAGATGCTTGGGTACATG
GTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAG
GGTAAGGAAACTCGCCATTATTGTATACTTTTTAACGGTACATTCTGTTT
TATTGAGACGTTACATTCTCTTCTTGGTGgccttattcatgatatgcacc
attgcaccatgtcttccacggacccagcAGCTGATTGGTAGAAAGTGACG
TATTTGCTGATTTTACTtgacttgcaaccaatcagctgttggttccgtga
tgtaatgtcggaagacattgcaatggtgcatatgaTGAATTCATGTTTAT
TTTCATACAATTTAAAGAAGCCCTATACCTGTGCTTTATGTCTCAAATAC
TTTTACTCTTTTTTCTGACTTGCAAGACGTGAATTGAAAagcccggcgaa
tctttaataATATGAATTGAATCCTATCCGAGAAGTGACCGAATTGGTTT
CTTCGATAAATTTAATGTACCTTCTGAATTAATATGTAGAATATTCAGAA
TTCCTTGAATGACAGCTTGTGCGATGGGATATTCGATCTTTATGCGTGCT
TTTATTTCCTTTAATAGAATTTACTGGAGCTGTTCAATAAGAAGTATTTA
CGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTT
AGCGCACCAACGACGCATCGCTTTCAAGTATGG Coding sequence (CDS) from alignment at sc0000095:22535..25017+ >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=CDS|length=2535bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica) GGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCAA AGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGTG CAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGT ATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCAC AACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATCA AGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAA AGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCGG TATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTAC TGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCCT GATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTTT CAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGAC TGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTG CGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATAC GCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCG TTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACA ACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCG AGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGG TTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGG AATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAG AGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCA TCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGT GGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGG TGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAG ATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAG ACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACA GGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTT TCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGG TACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTT TTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGC TGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAA CGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAA TAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGA GTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATC AAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTT CAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTT TCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAG AAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTAT GCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGAC ATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGT CGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGC GCACCAACGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTG TGGCTAATAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTC ATCATGAGTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCAT GTTGATCAAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTC AGGAGTTCAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTC ACTTGTTTCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGG TGTAAAGAAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACG ATCGTATGCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTT CATGGACATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTA TTTACGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTT TGTTAGCGCACCAACGACGCATCGCTTTCAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009438-exon-sc0000095-1491911889:22535..22613 | TCONS_00009438-exon-sc0000095-1491911889:22535..22613 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1510915933:22535..22613 | TCONS_00009438-exon-sc0000095-1510915933:22535..22613 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1575043694:22535..22613 | TCONS_00009438-exon-sc0000095-1575043694:22535..22613 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1491911889:23211..23369 | TCONS_00009438-exon-sc0000095-1491911889:23211..23369 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1510915933:23211..23369 | TCONS_00009438-exon-sc0000095-1510915933:23211..23369 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1575043694:23211..23369 | TCONS_00009438-exon-sc0000095-1575043694:23211..23369 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1491911889:23819..23908 | TCONS_00009438-exon-sc0000095-1491911889:23819..23908 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1510915933:23819..23908 | TCONS_00009438-exon-sc0000095-1510915933:23819..23908 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1575043694:23819..23908 | TCONS_00009438-exon-sc0000095-1575043694:23819..23908 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1491911889:24320..24385 | TCONS_00009438-exon-sc0000095-1491911889:24320..24385 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1510915933:24320..24385 | TCONS_00009438-exon-sc0000095-1510915933:24320..24385 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1575043694:24320..24385 | TCONS_00009438-exon-sc0000095-1575043694:24320..24385 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1491911889:24902..25017 | TCONS_00009438-exon-sc0000095-1491911889:24902..25017 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1510915933:24902..25017 | TCONS_00009438-exon-sc0000095-1510915933:24902..25017 | Clytia hemisphaerica | exon |
TCONS_00009438-exon-sc0000095-1575043694:24902..25017 | TCONS_00009438-exon-sc0000095-1575043694:24902..25017 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000095 | supercontig | sc0000095:22535..25017 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006153 | Cation/H_exchanger |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0006812 | cation transport |
GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
Term | Definition |
GO:0015299 | solute:proton antiporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006812 |
cation transport |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0015299 |
solute:proton antiporter activity |
Blast
BLAST of TCONS_00009438 vs. Swiss-Prot (Human)
Match: SL9A1 (Sodium/hydrogen exchanger 1 OS=Homo sapiens GN=SLC9A1 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 2.086e-21 Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 2 Query: 2 GVTMLTFVANKCGRLTKVKKVEQFIMSYGGLRGAVAFCLAMLIKEDDTPSIDGKPSSQEFKQTIVTTTISVVLFTCFIQGTTIKKLVDILGVKKSFKRDKSMAETVNDRMLGYMVAXXXXXXXXXXXXFWRNLLELFNKKYLRRWL 439
GV LT+ NK R+ K+ +QFI++YGGLRGA+AF L L+ + P D +T I+V+ FT F+QG TI+ LVD+L VKK + +S+ E ++ + L +++ GIE+I G +GH W++ L FNKKY+++ L
Sbjct: 428 GVLGLTWFINKF-RIVKLTPKDQFIIAYGGLRGAIAFSLGYLLDKKHFPMCD----------LFLTAIITVIFFTVFVQGMTIRPLVDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYVKKCL 562
The following BLAST results are available for this feature:
|