Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=510bp
AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA
AAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGT
GCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAG
TATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCA
CAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATC
AAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAA
AAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCG
GTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTA
CTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCC
TGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTT
TCAAGTATGG Run BLAST on NCBI protein sequence of TCONS_00009438-protein >TCONS_00009438-protein ID=TCONS_00009438-protein|Name=TCONS_00009438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
GVTMLTFVANKCGRLTKVKKVEQFIMSYGGLRGAVAFCLAMLIKEDDTPS
IDGKPSSQEFKQTIVTTTISVVLFTCFIQGTTIKKLVDILGVKKSFKRDK
SMAETVNDRMLGYMVAGIEEIIGVHGHGFWRNLLELFNKKYLRRWLERDP
DNPLDDSLLAHQRRIAFKY Run BLAST on NCBI transcript from alignment at sc0000095:22535..25017+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=transcript|length=2483bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica)
AGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCA
AAGTTAAAAAAGTCGAGCAGTTCATCATGGTAAGACTCCTTCCTGTTAAC
AATTTTAAatctctagtttagacggtcaGCTTACTGCATAACTTACTATC
CACCCTCATCTTGGCGAAAGTCGCCAGAAAGGTAGCCAACACTACCCTAC
catgtgatttttttaatcgttttgTTGGTCTGTAATGTTTTACTATGATT
GATAACGTTAAATTTATACACTGTGGGAGTACGTCAATGTAATGGCTACA
GACTTTCGAGTTCATTCGAACTCGAAGACTTTTATTTGCAGCGCAGTGTA
CTGGAAGCTTTTTCTGTTTGATCATATGAAAAAGATCATTTCCTATTGTA
TTTTTCAACTTCGTTCAATcataaatcaaattttgattgtGATTCATTTA
GTAAAATTTAGTGCTCATGATGGTTATACTTGAAAAGCTTTTTGTTGAAT
TGATAAATTTTGTCAGCTTTTCTTCATTAAACCTATAGAATAGCTACTTT
TGACACAGTTTCTACTCCCTATATTTAGCGGGGGAAGGGGGAGGCTGTTG
AATTTTAATGAAACCCAGACGAAGGGTATGTGTGCTGTAACTATGTTGAA
TCATCTATCTATATTTATATTCATAGAGTTATGGTGGTCTGCGAGGTGCA
GTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGTAT
TGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCACAA
CAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGTTTGTGTTATTTGA
TTATATATTATGTGTATATTCACTATGTAATCACATTGCTATTGTTAATA
ATTCCCAATCCTTTCAAAGGGAACAAGTGAGTGGAGGATTCATCAAACAA
TGGCCTCTCAATTTTATTCGGGCCCTGAATGTCTTGAATTTTGCAGCATT
TTGAATAGAGTCAGAGATATTTCACTTTGACCTAAGCTATAATAACTTTG
CCAGAACctgagaaaatacaaaaatgatgAACACGTTTTTTAAAACATCA
TGGGCAGTCCCGTATTTCCTTTTCTCTTGATCTGGAGCCGCACCTAAAAT
CACGAAATTAGAATAAACTCTGCAGCGATTATTGAAGAAATACAGCACCT
CCTATTCGAACGAATTTCTTGATCTTTATAAAGGGGTCAAGAGTGGCATA
TTTGATTTTTAggatttgttgttttcttttataGGGTACAACAATCAAGA
AACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAAAGT
ATGGCTGAAACAGTCAACGATCGTGTAAGTTTAATTGAATGTTTCCTTCT
GTTTGGACAAAAATGGTTGCCAGCATTTCAATGGAAGATATATAACCtgt
aaagttttgattttgaaatcatttttccaCTTTGAGGCAAATGACCTGTT
ACCAAGGTTCGGTCTAAATTGAATCCAAACGAAGttttcttttagatttt
ttaatacCATTTTTAAGCACACTTTAAATTGAGCATTTTAGGCTTTTTGA
AAAAGTCTACAGAAGCCATTGTAAGGCTTTATGAGAGAGGAAGTGCAAAA
AGGATAGAGCGTTGATCAATTTATGAAATGTACTCTCGCGATAATTGATT
TCTGAGGTCACTGAGGTTGTAAGCCCCGGGTAGTacacaaaattaaattt
aactAAAGTCTTTAAATTTTACTTCCTTGTTACAGATGCTTGGGTACATG
GTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAG
GGTAAGGAAACTCGCCATTATTGTATACTTTTTAACGGTACATTCTGTTT
TATTGAGACGTTACATTCTCTTCTTGGTGgccttattcatgatatgcacc
attgcaccatgtcttccacggacccagcAGCTGATTGGTAGAAAGTGACG
TATTTGCTGATTTTACTtgacttgcaaccaatcagctgttggttccgtga
tgtaatgtcggaagacattgcaatggtgcatatgaTGAATTCATGTTTAT
TTTCATACAATTTAAAGAAGCCCTATACCTGTGCTTTATGTCTCAAATAC
TTTTACTCTTTTTTCTGACTTGCAAGACGTGAATTGAAAagcccggcgaa
tctttaataATATGAATTGAATCCTATCCGAGAAGTGACCGAATTGGTTT
CTTCGATAAATTTAATGTACCTTCTGAATTAATATGTAGAATATTCAGAA
TTCCTTGAATGACAGCTTGTGCGATGGGATATTCGATCTTTATGCGTGCT
TTTATTTCCTTTAATAGAATTTACTGGAGCTGTTCAATAAGAAGTATTTA
CGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTT
AGCGCACCAACGACGCATCGCTTTCAAGTATGG Coding sequence (CDS) from alignment at sc0000095:22535..25017+ >TCONS_00009438 ID=TCONS_00009438|Name=TCONS_00009438|organism=Clytia hemisphaerica|type=CDS|length=2535bp|location=Sequence derived from alignment at sc0000095:22535..25017+ (Clytia hemisphaerica)
GGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGACTGACCAA
AGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTGCGAGGTG
CAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATACGCCCAGT
ATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCGTTACCAC
AACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACAACAATCA
AGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCGAGATAAA
AGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGGTTGCCGG
TATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGGAATTTAC
TGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAGAGATCCT
GATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCATCGCTTT
CAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGTGGACGAC
TGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGGTGGTCTG
CGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAGATGATAC
GCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAGACCATCG
TTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACAGGGTACA
ACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTTTCAAGCG
AGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGGTACATGG
TTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTTTTGGAGG
AATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGCTGGAGAG
AGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAACGACGCA
TCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAATAAATGT
GGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGAGTTATGG
TGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATCAAAGAAG
ATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTTCAAACAG
ACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTTTCATACA
GGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAGAAATCTT
TCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTATGCTTGGG
TACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGACATGGGTT
TTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGTCGATGGC
TGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGCGCACCAA
CGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTGTGGCTAA
TAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTCATCATGA
GTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCATGTTGATC
AAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTCAGGAGTT
CAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTCACTTGTT
TCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGGTGTAAAG
AAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACGATCGTAT
GCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTTCATGGAC
ATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTATTTACGT
CGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTTTGTTAGC
GCACCAACGACGCATCGCTTTCAAGTATGGTGTTACAATGTTGACGTTTG
TGGCTAATAAATGTGGACGACTGACCAAAGTTAAAAAAGTCGAGCAGTTC
ATCATGAGTTATGGTGGTCTGCGAGGTGCAGTCGCTTTTTGTTTAGCCAT
GTTGATCAAAGAAGATGATACGCCCAGTATTGATGGCAAACCAAGTAGTC
AGGAGTTCAAACAGACCATCGTTACCACAACAATCAGTGTTGTTCTTTTC
ACTTGTTTCATACAGGGTACAACAATCAAGAAACTTGTCGACATTCTGGG
TGTAAAGAAATCTTTCAAGCGAGATAAAAGTATGGCTGAAACAGTCAACG
ATCGTATGCTTGGGTACATGGTTGCCGGTATCGAAGAAATCATTGGTGTT
CATGGACATGGGTTTTGGAGGAATTTACTGGAGCTGTTCAATAAGAAGTA
TTTACGTCGATGGCTGGAGAGAGATCCTGATAATCCACTCGATGACAGTT
TGTTAGCGCACCAACGACGCATCGCTTTCAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009438-exon-sc0000095-1491911889:22535..22613 | TCONS_00009438-exon-sc0000095-1491911889:22535..22613 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1510915933:22535..22613 | TCONS_00009438-exon-sc0000095-1510915933:22535..22613 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1575043694:22535..22613 | TCONS_00009438-exon-sc0000095-1575043694:22535..22613 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1491911889:23211..23369 | TCONS_00009438-exon-sc0000095-1491911889:23211..23369 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1510915933:23211..23369 | TCONS_00009438-exon-sc0000095-1510915933:23211..23369 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1575043694:23211..23369 | TCONS_00009438-exon-sc0000095-1575043694:23211..23369 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1491911889:23819..23908 | TCONS_00009438-exon-sc0000095-1491911889:23819..23908 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1510915933:23819..23908 | TCONS_00009438-exon-sc0000095-1510915933:23819..23908 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1575043694:23819..23908 | TCONS_00009438-exon-sc0000095-1575043694:23819..23908 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1491911889:24320..24385 | TCONS_00009438-exon-sc0000095-1491911889:24320..24385 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1510915933:24320..24385 | TCONS_00009438-exon-sc0000095-1510915933:24320..24385 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1575043694:24320..24385 | TCONS_00009438-exon-sc0000095-1575043694:24320..24385 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1491911889:24902..25017 | TCONS_00009438-exon-sc0000095-1491911889:24902..25017 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1510915933:24902..25017 | TCONS_00009438-exon-sc0000095-1510915933:24902..25017 | Clytia hemisphaerica | exon |
| TCONS_00009438-exon-sc0000095-1575043694:24902..25017 | TCONS_00009438-exon-sc0000095-1575043694:24902..25017 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:22535..25017 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006153 | Cation/H_exchanger |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006812 | cation transport |
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015299 | solute:proton antiporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006812 |
cation transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0015299 |
solute:proton antiporter activity |
Blast
BLAST of TCONS_00009438 vs. Swiss-Prot (Human)
Match: SL9A1 (Sodium/hydrogen exchanger 1 OS=Homo sapiens GN=SLC9A1 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 2.086e-21 Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 2 Query: 2 GVTMLTFVANKCGRLTKVKKVEQFIMSYGGLRGAVAFCLAMLIKEDDTPSIDGKPSSQEFKQTIVTTTISVVLFTCFIQGTTIKKLVDILGVKKSFKRDKSMAETVNDRMLGYMVAXXXXXXXXXXXXFWRNLLELFNKKYLRRWL 439
GV LT+ NK R+ K+ +QFI++YGGLRGA+AF L L+ + P D +T I+V+ FT F+QG TI+ LVD+L VKK + +S+ E ++ + L +++ GIE+I G +GH W++ L FNKKY+++ L
Sbjct: 428 GVLGLTWFINKF-RIVKLTPKDQFIIAYGGLRGAIAFSLGYLLDKKHFPMCD----------LFLTAIITVIFFTVFVQGMTIRPLVDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYVKKCL 562
The following BLAST results are available for this feature:
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